Cla020002 (gene) Watermelon (97103) v1

Overview
NameCla020002
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionGermin-like protein 2 (AHRD V1 ***- Q0MYQ7_VITVI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold
LocationChr2 : 25004685 .. 25005864 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCTGCCTCCTTCCCCTGCTCTGTTTATTGCTTCTCTTGCCTTCTTCTTCTTCGCCATCGCCACGGCCGATCCCGATTTGCTTCAAGACGTTTGCGTCGCCGATCTCGCTTCTGGTACCTACTTTCTACTCCCCCAATTTCCTAATTCAAGCTAACCTCTCCCTCTATTTCTATATTCCCCCAATTCTCTAACAAGGTTGCATAATCATTGGTTTCTAAGTTTAGGGTTATGGCCTTGTGGGTTTTCATTTGTTCATAGTTGAGTAAAGGGTATAGGGTTTTTGTTCCAACAAGACCCTTCACCATCTCTATTTTGGACAGAAGCCTGAGAGGAAGATTTGATTTTGTTTTCATCCAAAACGTCTCCATCTTGTTGAGTTAGAATTGAGTTTTGAATTCGAAATGTCTCGTATCAATAGAGATGTTGTCTAAACAGGCTCACAATGCCTAGAAGGAAGAACTAACAAGAAAAAGATCAAGACATTGACCTCTTTAGAGATGGAATTCAGATTGATTCAAAGAATTTCCTCTGTTCTAATCCATGTTTAAGCTCAAACTAGACAACATCATAGGCTCTAATCATAACCAGCATTCCCAAACAGTTTATATTTTGCAGATACTAACATTTGAATCAAAACAGGAATCAAAGTAAACGGATTCACCTGCAAATCGAATTTCTCAGCAAACGATTTCTTCTTCGATGGATTGGCCAAACCAGGGCTCACCAACAATACCCTAGGCTCGCGAGTAACTGGAGCCAATGTCCAATCAATCCCCGGCCTGAACACACTCGGCGTCTCCCTCTCGCGAATCGACTATGCTCCCGGCGGGCTGAATCCGCCGCACACGCATCCACGCGCAACCGAGATCGTGTTCGTCCTCGAAGGCCAACTAGACGTCGGCTTCATTACAACCGCCAATGTTCTTGTCTCGAAATCGATCAAGAAGGGTGAGATCTTCGTTTTCCCGAAGGGATTGGTTCACTTCCAGAAAAACAACGGAAAGGTTCCGGCGGCGGTGATTGCGGCGTTTAATAGCCAGTTGCCTGGTACGCAATCGATTGCGGCGGCGCTTTTCGCCGCATCTCCGCCGGTTCCTGATAATGTCTTGACGAAGGCGTTTCAGATTGGGACTAAGGAGGTTGAGAAGATCAAATCGAGGCTTGCACCGAAATAA

mRNA sequence

ATGAAGCTGCCTCCTTCCCCTGCTCTGTTTATTGCTTCTCTTGCCTTCTTCTTCTTCGCCATCGCCACGGCCGATCCCGATTTGCTTCAAGACGTTTGCGTCGCCGATCTCGCTTCTGGAATCAAAGTAAACGGATTCACCTGCAAATCGAATTTCTCAGCAAACGATTTCTTCTTCGATGGATTGGCCAAACCAGGGCTCACCAACAATACCCTAGGCTCGCGAGTAACTGGAGCCAATGTCCAATCAATCCCCGGCCTGAACACACTCGGCGTCTCCCTCTCGCGAATCGACTATGCTCCCGGCGGGCTGAATCCGCCGCACACGCATCCACGCGCAACCGAGATCGTGTTCGTCCTCGAAGGCCAACTAGACGTCGGCTTCATTACAACCGCCAATGTTCTTGTCTCGAAATCGATCAAGAAGGGTGAGATCTTCGTTTTCCCGAAGGGATTGGTTCACTTCCAGAAAAACAACGGAAAGGTTCCGGCGGCGGTGATTGCGGCGTTTAATAGCCAGTTGCCTGGTACGCAATCGATTGCGGCGGCGCTTTTCGCCGCATCTCCGCCGGTTCCTGATAATGTCTTGACGAAGGCGTTTCAGATTGGGACTAAGGAGGTTGAGAAGATCAAATCGAGGCTTGCACCGAAATAA

Coding sequence (CDS)

ATGAAGCTGCCTCCTTCCCCTGCTCTGTTTATTGCTTCTCTTGCCTTCTTCTTCTTCGCCATCGCCACGGCCGATCCCGATTTGCTTCAAGACGTTTGCGTCGCCGATCTCGCTTCTGGAATCAAAGTAAACGGATTCACCTGCAAATCGAATTTCTCAGCAAACGATTTCTTCTTCGATGGATTGGCCAAACCAGGGCTCACCAACAATACCCTAGGCTCGCGAGTAACTGGAGCCAATGTCCAATCAATCCCCGGCCTGAACACACTCGGCGTCTCCCTCTCGCGAATCGACTATGCTCCCGGCGGGCTGAATCCGCCGCACACGCATCCACGCGCAACCGAGATCGTGTTCGTCCTCGAAGGCCAACTAGACGTCGGCTTCATTACAACCGCCAATGTTCTTGTCTCGAAATCGATCAAGAAGGGTGAGATCTTCGTTTTCCCGAAGGGATTGGTTCACTTCCAGAAAAACAACGGAAAGGTTCCGGCGGCGGTGATTGCGGCGTTTAATAGCCAGTTGCCTGGTACGCAATCGATTGCGGCGGCGCTTTTCGCCGCATCTCCGCCGGTTCCTGATAATGTCTTGACGAAGGCGTTTCAGATTGGGACTAAGGAGGTTGAGAAGATCAAATCGAGGCTTGCACCGAAATAA

Protein sequence

MKLPPSPALFIASLAFFFFAIATADPDLLQDVCVADLASGIKVNGFTCKSNFSANDFFFDGLAKPGLTNNTLGSRVTGANVQSIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEIVFVLEGQLDVGFITTANVLVSKSIKKGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSIAAALFAASPPVPDNVLTKAFQIGTKEVEKIKSRLAPK
Homology
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BLAST of Cla020002 vs. Swiss-Prot
Match: GL52_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0277500 PE=2 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 8.8e-84
Identity = 152/213 (71.36%), Postives = 172/213 (80.75%), Query Frame = 1 

Query: 5   PSPALFIASLAFFFFAIATADPDLLQDVCVADLASGIKVNGFTCKSNFSANDFFFDGLAK 64
           P   + +  LA         DPDLLQD+CVADL S +KVNGF CK+  + +DF+F GLA 
Sbjct: 7   PCAVVAVLLLALLPTPSTAGDPDLLQDICVADLTSAVKVNGFACKAAVTEDDFYFKGLAA 66

Query: 65  PGLTNNTLGSRVTGANVQSIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEIVFVLEGQL 124
            G TNNT GS VTGANV+ +PGLNTLGVS+SRIDYAPGGLNPPHTHPRATE+VFVL+G L
Sbjct: 67  AGNTNNTYGSVVTGANVEKLPGLNTLGVSMSRIDYAPGGLNPPHTHPRATEMVFVLQGTL 126

Query: 125 DVGFITTANVLVSKSIKKGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSIAAAL 184
           DVGFITTAN L +K+I  G++FVFP+GL+HFQKNNG  PAAVI+AFNSQLPGTQS+A  L
Sbjct: 127 DVGFITTANKLYTKTISAGDVFVFPRGLLHFQKNNGDTPAAVISAFNSQLPGTQSLAMTL 186

Query: 185 FAASPPVPDNVLTKAFQIGTKEVEKIKSRLAPK 218
           FAASP VPD VLTKAFQ+GTKEVEKIKSRLAPK
Sbjct: 187 FAASPEVPDGVLTKAFQVGTKEVEKIKSRLAPK 219

[Close]
BLAST of Cla020002 vs. Swiss-Prot
Match: GL21_ARATH (Germin-like protein subfamily 2 member 1 OS=Arabidopsis thaliana GN=GLP4 PE=2 SV=2)

HSP 1 Score: 307.8 bits (787), Expect = 9.7e-83
Identity = 149/215 (69.30%), Postives = 175/215 (81.40%), Query Frame = 1 

Query: 5   PSPALFIASLAFFFFAIATADPDLLQDVCVADLASGIKVNGFTCK--SNFSANDFFFDGL 64
           P+  L +      FF  ++ADPD+LQD+CVADL SGIK+NGF CK  +  ++ DFF  GL
Sbjct: 4   PTLTLLLLLTTVSFFISSSADPDMLQDLCVADLPSGIKINGFPCKDAATVTSADFFSQGL 63

Query: 65  AKPGLTNNTLGSRVTGANVQSIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEIVFVLEG 124
           AKPGLTNNT G+ VTGANV +IPGLNTLGVSLSRIDYAPGGLNPPHTHPRATE+VFVLEG
Sbjct: 64  AKPGLTNNTFGALVTGANVMTIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEVVFVLEG 123

Query: 125 QLDVGFITTANVLVSKSIKKGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSIAA 184
            LDVGF+TTAN L+S+S+KKG++F FPKGLVHFQKNNG VPA+VIAAFNSQLPGTQS+ A
Sbjct: 124 TLDVGFLTTANKLISQSLKKGDVFAFPKGLVHFQKNNGDVPASVIAAFNSQLPGTQSLGA 183

Query: 185 ALFAASPPVPDNVLTKAFQIGTKEVEKIKSRLAPK 218
            LF ++PPVPDN+L +AFQ     V+ IKS+  PK
Sbjct: 184 TLFGSTPPVPDNILAQAFQTSPGTVKHIKSKFQPK 218

[Close]
BLAST of Cla020002 vs. Swiss-Prot
Match: GL24_ARATH (Germin-like protein subfamily 2 member 4 OS=Arabidopsis thaliana GN=GLP10 PE=2 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 2.8e-82
Identity = 150/211 (71.09%), Postives = 175/211 (82.94%), Query Frame = 1 

Query: 17  FFFAIATA-------DPDLLQDVCVADLASGIKVNGFTCK--SNFSANDFFFDGLAKPGL 76
           FFF + +        DPD LQD+CVAD  SGIKVNGFTCK  SN +A+DFFF G+ KP +
Sbjct: 8   FFFTLLSLNVIVLAYDPDTLQDLCVADRTSGIKVNGFTCKPESNITASDFFFAGIGKPAV 67

Query: 77  TNNTLGSRVTGANVQSIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEIVFVLEGQLDVG 136
            NNT+GS VTGANV+ I GLNTLGVSL+RIDYAPGGLNPPHTHPRATE++FVLEG+LDVG
Sbjct: 68  VNNTVGSAVTGANVEKIAGLNTLGVSLARIDYAPGGLNPPHTHPRATEVIFVLEGELDVG 127

Query: 137 FITTANVLVSKSIKKGEIFVFPKGLVHFQKNNGKV-PAAVIAAFNSQLPGTQSIAAALFA 196
           FITTAN L +K++KKGE+FVFP+GL+H+QKNN K  PA+VI+AFNSQLPGTQSIAA LF 
Sbjct: 128 FITTANKLFAKTVKKGEVFVFPRGLIHYQKNNDKAKPASVISAFNSQLPGTQSIAATLFT 187

Query: 197 ASPPVPDNVLTKAFQIGTKEVEKIKSRLAPK 218
           A+P +PD+VLT  FQIGTKE+EKIKS+ APK
Sbjct: 188 ATPAIPDHVLTTTFQIGTKEIEKIKSKFAPK 218

[Close]
BLAST of Cla020002 vs. Swiss-Prot
Match: RHRE_PEA (Rhicadhesin receptor OS=Pisum sativum GN=GER1 PE=1 SV=2)

HSP 1 Score: 299.3 bits (765), Expect = 3.4e-80
Identity = 157/213 (73.71%), Postives = 168/213 (78.87%), Query Frame = 1 

Query: 11  IASLAFFFFAIAT----ADPDLLQDVCVADLASGIKVNGFTCK--SNFSANDFFFDGLAK 70
           IA L     A AT    AD D LQD+CVAD AS I VNGF CK  SN +A DFF + L K
Sbjct: 4   IAVLLLVVLATATTATAADADALQDLCVADYASVILVNGFACKPASNVTAEDFFSNLLVK 63

Query: 71  PGLTNNTLGSRVTGANVQSIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEIVFVLEGQL 130
            G TNNT GS VTGANVQ IPGLNTLGVS++RIDYAPGGLNPPHTHPRATE+VFVLEGQL
Sbjct: 64  QGATNNTFGSLVTGANVQRIPGLNTLGVSMARIDYAPGGLNPPHTHPRATEMVFVLEGQL 123

Query: 131 DVGFITTANVLVSKSIKKGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSIAAAL 190
           DVGFITT N L++K+I KGE FVFPKGLVHFQKNNG  PA VIA FNSQLPGT +I   L
Sbjct: 124 DVGFITTTNQLIAKTIAKGETFVFPKGLVHFQKNNGWEPATVIAGFNSQLPGTVNIPLTL 183

Query: 191 FAASPPVPDNVLTKAFQIGTKEVEKIKSRLAPK 218
           F A+PPVPDNVLTKAFQIGTKEV+KIKS+ APK
Sbjct: 184 FNATPPVPDNVLTKAFQIGTKEVQKIKSKFAPK 216

[Close]
BLAST of Cla020002 vs. Swiss-Prot
Match: NEC1_NICLS (Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana sanderae GN=NECI PE=1 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 4.5e-80
Identity = 146/208 (70.19%), Postives = 174/208 (83.65%), Query Frame = 1 

Query: 9   LFIASLAFFFFAIATADPDLLQDVCVADLASGIKVNGFTCKSNFSANDFFFDGLAKPGLT 68
           LF+ +++   +  A AD D+LQDVCVADL S +KVNGF CK+NF+A DF    ++KPG T
Sbjct: 19  LFLLAISIDRYCFA-ADEDMLQDVCVADLHSKVKVNGFPCKTNFTAADFSSLAISKPGAT 78

Query: 69  NNTLGSRVTGANVQSIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEIVFVLEGQLDVGF 128
           NN  GS VT ANV+ +PGLNTLGVSL+RIDYAPGG+NPPHTHPRA+E+VFV+EG+LDVGF
Sbjct: 79  NNKFGSVVTTANVEQVPGLNTLGVSLARIDYAPGGINPPHTHPRASEMVFVMEGELDVGF 138

Query: 129 ITTANVLVSKSIKKGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSIAAALFAAS 188
           ITTANVLVSK I KGE+FVFP+GLVHFQKNNG+VPAAVI+AFNSQLPGTQSI   LF AS
Sbjct: 139 ITTANVLVSKKIIKGEVFVFPRGLVHFQKNNGEVPAAVISAFNSQLPGTQSIPITLFGAS 198

Query: 189 PPVPDNVLTKAFQIGTKEVEKIKSRLAP 217
           PPVPD+VL + FQI T++V++IKS+ AP
Sbjct: 199 PPVPDDVLAQTFQINTEDVQQIKSKFAP 225

[Close]
BLAST of Cla020002 vs. TrEMBL
Match: A0A0A0LK24_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G035370 PE=3 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 1.9e-109
Identity = 203/217 (93.55%), Postives = 207/217 (95.39%), Query Frame = 1 

Query: 1   MKLPPSPALFIASLAFFFFAIATADPDLLQDVCVADLASGIKVNGFTCKSNFSANDFFFD 60
           MKL P  ALF ASLAFFFF I  ADPDLLQDVCVADLASGIKVNGFTCKSNFSA+DFFF+
Sbjct: 1   MKLHPFSALFTASLAFFFFVITAADPDLLQDVCVADLASGIKVNGFTCKSNFSADDFFFN 60

Query: 61  GLAKPGLTNNTLGSRVTGANVQSIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEIVFVL 120
           GLAKPG TNNTLGSRVTGANVQSIPGLNTLGVSL+RIDYAPGGLNPPHTHPRATEIVFVL
Sbjct: 61  GLAKPGATNNTLGSRVTGANVQSIPGLNTLGVSLARIDYAPGGLNPPHTHPRATEIVFVL 120

Query: 121 EGQLDVGFITTANVLVSKSIKKGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSI 180
           EGQLDVGFITT NVLVSKSIKKGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQ PGTQSI
Sbjct: 121 EGQLDVGFITTGNVLVSKSIKKGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQFPGTQSI 180

Query: 181 AAALFAASPPVPDNVLTKAFQIGTKEVEKIKSRLAPK 218
           AAALFAASPPVPDNVLTKAFQ+GTKEVEKIKSRLAPK
Sbjct: 181 AAALFAASPPVPDNVLTKAFQVGTKEVEKIKSRLAPK 217

[Close]
BLAST of Cla020002 vs. TrEMBL
Match: Q0MYQ7_VITVI (Germin-like protein 2 OS=Vitis vinifera GN=VIT_14s0060g00120 PE=2 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 1.2e-95
Identity = 178/212 (83.96%), Postives = 197/212 (92.92%), Query Frame = 1 

Query: 8   ALFIASLAFFFFAIATADPDLLQDVCVADLASGIKVNGFTCK--SNFSANDFFFDGLAKP 67
           ALF+ +LA F   +A ADPD+LQDVCVADL SG+KVNGF+CK  +N +A DFFFDGLAKP
Sbjct: 6   ALFVITLAVFSGTVA-ADPDMLQDVCVADLTSGVKVNGFSCKDATNITATDFFFDGLAKP 65

Query: 68  GLTNNTLGSRVTGANVQSIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEIVFVLEGQLD 127
           GLTNN++GS VTGANVQ IPGLNTLGVSLSRIDYAPGGLNPPHTHPRATE+VFVLEG+LD
Sbjct: 66  GLTNNSMGSLVTGANVQKIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEMVFVLEGELD 125

Query: 128 VGFITTANVLVSKSIKKGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSIAAALF 187
           VGFITT+N L+SKSIKKGEIFVFPKGLVHFQKNNG+VPAAVI+AFNSQLPGTQSIA +LF
Sbjct: 126 VGFITTSNTLISKSIKKGEIFVFPKGLVHFQKNNGEVPAAVISAFNSQLPGTQSIAVSLF 185

Query: 188 AASPPVPDNVLTKAFQIGTKEVEKIKSRLAPK 218
           AASPPVP+NVLTKAFQ+GTKEVEKIKSRLAPK
Sbjct: 186 AASPPVPNNVLTKAFQVGTKEVEKIKSRLAPK 216

[Close]
BLAST of Cla020002 vs. TrEMBL
Match: A9PF73_POPTR (Rhicadhesin receptor family protein OS=Populus trichocarpa GN=POPTR_0005s00310g PE=2 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 4.2e-93
Identity = 173/210 (82.38%), Postives = 185/210 (88.10%), Query Frame = 1 

Query: 8   ALFIASLAFFFFAIATADPDLLQDVCVADLASGIKVNGFTCKSNFSANDFFFDGLAKPGL 67
           +L   +L     A  +ADPDLLQDVCVADL+SG+KVNGFTCK N SA DFFF GLAKPGL
Sbjct: 10  SLLYMTLGLVLVATVSADPDLLQDVCVADLSSGVKVNGFTCKENISAEDFFFAGLAKPGL 69

Query: 68  TNNTLGSRVTGANVQSIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEIVFVLEGQLDVG 127
           TNNT GS VT ANVQ IPGLNTLGVS+SRIDYAPGGLNPPHTHPRATE+VFVLEGQLDVG
Sbjct: 70  TNNTFGSLVTAANVQKIPGLNTLGVSMSRIDYAPGGLNPPHTHPRATEMVFVLEGQLDVG 129

Query: 128 FITTANVLVSKSIKKGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSIAAALFAA 187
           FITTANVL+SK+IK GE FVFPKGLVHFQKNNG+V AAVIAAFNSQLPGTQSIAA LFAA
Sbjct: 130 FITTANVLISKTIKVGETFVFPKGLVHFQKNNGQVSAAVIAAFNSQLPGTQSIAATLFAA 189

Query: 188 SPPVPDNVLTKAFQIGTKEVEKIKSRLAPK 218
            PPVPD+VLTKAFQ+GTKEV KIKSR APK
Sbjct: 190 QPPVPDHVLTKAFQVGTKEVRKIKSRFAPK 219

[Close]
BLAST of Cla020002 vs. TrEMBL
Match: B9I6B2_POPTR (Rhicadhesin receptor family protein OS=Populus trichocarpa GN=POPTR_0013s00240g PE=3 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 2.7e-92
Identity = 170/210 (80.95%), Postives = 183/210 (87.14%), Query Frame = 1 

Query: 8   ALFIASLAFFFFAIATADPDLLQDVCVADLASGIKVNGFTCKSNFSANDFFFDGLAKPGL 67
           AL   +    F A  +ADPDLLQDVCVAD ASG+KVNGFTCK N +A+DFFF GLAKPGL
Sbjct: 6   ALLFLTFCVAFLATGSADPDLLQDVCVADFASGVKVNGFTCKENITADDFFFAGLAKPGL 65

Query: 68  TNNTLGSRVTGANVQSIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEIVFVLEGQLDVG 127
           TNNT GS VT ANVQ IPGLNTLGVS++RIDYAPGGLNPPHTHPRATE+VFVLEGQLDVG
Sbjct: 66  TNNTFGSLVTAANVQKIPGLNTLGVSMARIDYAPGGLNPPHTHPRATEMVFVLEGQLDVG 125

Query: 128 FITTANVLVSKSIKKGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSIAAALFAA 187
           FITTANVL+SK+IK GEIF FPKGLVHFQKNNG+VPAAVIAAF SQL GTQSI A LFAA
Sbjct: 126 FITTANVLISKTIKAGEIFTFPKGLVHFQKNNGQVPAAVIAAFGSQLAGTQSIGATLFAA 185

Query: 188 SPPVPDNVLTKAFQIGTKEVEKIKSRLAPK 218
            PPVPDNVL KAFQ+GTKEV+KIKSR APK
Sbjct: 186 QPPVPDNVLAKAFQVGTKEVQKIKSRFAPK 215

[Close]
BLAST of Cla020002 vs. TrEMBL
Match: B9RFS5_RICCO (Rhicadhesin receptor, putative OS=Ricinus communis GN=RCOM_1437110 PE=3 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 4.7e-92
Identity = 170/210 (80.95%), Postives = 189/210 (90.00%), Query Frame = 1 

Query: 8   ALFIASLAFFFFAIATADPDLLQDVCVADLASGIKVNGFTCKSNFSANDFFFDGLAKPGL 67
           ALF+ +      ++A ADPDLLQDVCVADL SGIK+NGF CK N +A DF+ + LAKPGL
Sbjct: 6   ALFVMAFGIVLSSVA-ADPDLLQDVCVADLTSGIKINGFVCKENITAEDFYSNVLAKPGL 65

Query: 68  TNNTLGSRVTGANVQSIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEIVFVLEGQLDVG 127
           TNNTLGS VTGANVQ IPGLNTLGVS+SRIDYAPGGLNPPHTHPRATE+VFVLEGQLDVG
Sbjct: 66  TNNTLGSLVTGANVQKIPGLNTLGVSMSRIDYAPGGLNPPHTHPRATEMVFVLEGQLDVG 125

Query: 128 FITTANVLVSKSIKKGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSIAAALFAA 187
           FITT NVL+SK+I KGEIFVFP+GLVHFQ+NNGK PAAVIAAFNSQLPGTQ+IAA LFAA
Sbjct: 126 FITTGNVLISKTISKGEIFVFPRGLVHFQQNNGKYPAAVIAAFNSQLPGTQAIAATLFAA 185

Query: 188 SPPVPDNVLTKAFQIGTKEVEKIKSRLAPK 218
           +PPVPD+VLTKAFQ+GTKEV+KIKSRLAPK
Sbjct: 186 TPPVPDHVLTKAFQVGTKEVQKIKSRLAPK 214

[Close]
BLAST of Cla020002 vs. NCBI nr
Match: gi|449453984|ref|XP_004144736.1| (PREDICTED: germin-like protein 5-1 [Cucumis sativus])

HSP 1 Score: 403.3 bits (1035), Expect = 2.7e-109
Identity = 203/217 (93.55%), Postives = 207/217 (95.39%), Query Frame = 1 

Query: 1   MKLPPSPALFIASLAFFFFAIATADPDLLQDVCVADLASGIKVNGFTCKSNFSANDFFFD 60
           MKL P  ALF ASLAFFFF I  ADPDLLQDVCVADLASGIKVNGFTCKSNFSA+DFFF+
Sbjct: 1   MKLHPFSALFTASLAFFFFVITAADPDLLQDVCVADLASGIKVNGFTCKSNFSADDFFFN 60

Query: 61  GLAKPGLTNNTLGSRVTGANVQSIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEIVFVL 120
           GLAKPG TNNTLGSRVTGANVQSIPGLNTLGVSL+RIDYAPGGLNPPHTHPRATEIVFVL
Sbjct: 61  GLAKPGATNNTLGSRVTGANVQSIPGLNTLGVSLARIDYAPGGLNPPHTHPRATEIVFVL 120

Query: 121 EGQLDVGFITTANVLVSKSIKKGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSI 180
           EGQLDVGFITT NVLVSKSIKKGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQ PGTQSI
Sbjct: 121 EGQLDVGFITTGNVLVSKSIKKGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQFPGTQSI 180

Query: 181 AAALFAASPPVPDNVLTKAFQIGTKEVEKIKSRLAPK 218
           AAALFAASPPVPDNVLTKAFQ+GTKEVEKIKSRLAPK
Sbjct: 181 AAALFAASPPVPDNVLTKAFQVGTKEVEKIKSRLAPK 217

[Close]
BLAST of Cla020002 vs. NCBI nr
Match: gi|659070031|ref|XP_008453001.1| (PREDICTED: germin-like protein 5-1 [Cucumis melo])

HSP 1 Score: 397.1 bits (1019), Expect = 1.9e-107
Identity = 202/218 (92.66%), Postives = 207/218 (94.95%), Query Frame = 1 

Query: 1   MKLPP-SPALFIASLAFFFFAIATADPDLLQDVCVADLASGIKVNGFTCKSNFSANDFFF 60
           MKLP  S ALF ASLA FFF +  ADPDLLQDVCVADLASGIKVNGFTCKSNFSA+DFFF
Sbjct: 1   MKLPHHSSALFTASLALFFFVVTAADPDLLQDVCVADLASGIKVNGFTCKSNFSADDFFF 60

Query: 61  DGLAKPGLTNNTLGSRVTGANVQSIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEIVFV 120
           +GLAK GLTNNTLGSRVTGANVQSIPGLNTLGVSL+RIDYAPGGLNPPHTHPRATEIVFV
Sbjct: 61  NGLAKSGLTNNTLGSRVTGANVQSIPGLNTLGVSLARIDYAPGGLNPPHTHPRATEIVFV 120

Query: 121 LEGQLDVGFITTANVLVSKSIKKGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQS 180
           LEGQLDVGFITT NVLVSKSIKKGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQ PGTQS
Sbjct: 121 LEGQLDVGFITTGNVLVSKSIKKGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQFPGTQS 180

Query: 181 IAAALFAASPPVPDNVLTKAFQIGTKEVEKIKSRLAPK 218
           IAAALFAASPPVPDNVLTKAFQ+GTKEVEKIKSRLAPK
Sbjct: 181 IAAALFAASPPVPDNVLTKAFQVGTKEVEKIKSRLAPK 218

[Close]
BLAST of Cla020002 vs. NCBI nr
Match: gi|526118000|ref|NP_001267914.1| (germin-like protein 2 precursor [Vitis vinifera])

HSP 1 Score: 357.5 bits (916), Expect = 1.7e-95
Identity = 178/212 (83.96%), Postives = 197/212 (92.92%), Query Frame = 1 

Query: 8   ALFIASLAFFFFAIATADPDLLQDVCVADLASGIKVNGFTCK--SNFSANDFFFDGLAKP 67
           ALF+ +LA F   +A ADPD+LQDVCVADL SG+KVNGF+CK  +N +A DFFFDGLAKP
Sbjct: 6   ALFVITLAVFSGTVA-ADPDMLQDVCVADLTSGVKVNGFSCKDATNITATDFFFDGLAKP 65

Query: 68  GLTNNTLGSRVTGANVQSIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEIVFVLEGQLD 127
           GLTNN++GS VTGANVQ IPGLNTLGVSLSRIDYAPGGLNPPHTHPRATE+VFVLEG+LD
Sbjct: 66  GLTNNSMGSLVTGANVQKIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEMVFVLEGELD 125

Query: 128 VGFITTANVLVSKSIKKGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSIAAALF 187
           VGFITT+N L+SKSIKKGEIFVFPKGLVHFQKNNG+VPAAVI+AFNSQLPGTQSIA +LF
Sbjct: 126 VGFITTSNTLISKSIKKGEIFVFPKGLVHFQKNNGEVPAAVISAFNSQLPGTQSIAVSLF 185

Query: 188 AASPPVPDNVLTKAFQIGTKEVEKIKSRLAPK 218
           AASPPVP+NVLTKAFQ+GTKEVEKIKSRLAPK
Sbjct: 186 AASPPVPNNVLTKAFQVGTKEVEKIKSRLAPK 216

[Close]
BLAST of Cla020002 vs. NCBI nr
Match: gi|566168527|ref|XP_006382248.1| (rhicadhesin receptor family protein [Populus trichocarpa])

HSP 1 Score: 349.0 bits (894), Expect = 6.1e-93
Identity = 173/210 (82.38%), Postives = 185/210 (88.10%), Query Frame = 1 

Query: 8   ALFIASLAFFFFAIATADPDLLQDVCVADLASGIKVNGFTCKSNFSANDFFFDGLAKPGL 67
           +L   +L     A  +ADPDLLQDVCVADL+SG+KVNGFTCK N SA DFFF GLAKPGL
Sbjct: 10  SLLYMTLGLVLVATVSADPDLLQDVCVADLSSGVKVNGFTCKENISAEDFFFAGLAKPGL 69

Query: 68  TNNTLGSRVTGANVQSIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEIVFVLEGQLDVG 127
           TNNT GS VT ANVQ IPGLNTLGVS+SRIDYAPGGLNPPHTHPRATE+VFVLEGQLDVG
Sbjct: 70  TNNTFGSLVTAANVQKIPGLNTLGVSMSRIDYAPGGLNPPHTHPRATEMVFVLEGQLDVG 129

Query: 128 FITTANVLVSKSIKKGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSIAAALFAA 187
           FITTANVL+SK+IK GE FVFPKGLVHFQKNNG+V AAVIAAFNSQLPGTQSIAA LFAA
Sbjct: 130 FITTANVLISKTIKVGETFVFPKGLVHFQKNNGQVSAAVIAAFNSQLPGTQSIAATLFAA 189

Query: 188 SPPVPDNVLTKAFQIGTKEVEKIKSRLAPK 218
            PPVPD+VLTKAFQ+GTKEV KIKSR APK
Sbjct: 190 QPPVPDHVLTKAFQVGTKEVRKIKSRFAPK 219

[Close]
BLAST of Cla020002 vs. NCBI nr
Match: gi|743890486|ref|XP_011039061.1| (PREDICTED: germin-like protein 5-1 [Populus euphratica])

HSP 1 Score: 347.4 bits (890), Expect = 1.8e-92
Identity = 172/210 (81.90%), Postives = 185/210 (88.10%), Query Frame = 1 

Query: 8   ALFIASLAFFFFAIATADPDLLQDVCVADLASGIKVNGFTCKSNFSANDFFFDGLAKPGL 67
           +L   +L     A  +ADPDLLQDVCVADL+SG+KVNGFTCK N SA DFFF GLAKPGL
Sbjct: 10  SLLYMTLGLVLVATVSADPDLLQDVCVADLSSGVKVNGFTCKENISAEDFFFAGLAKPGL 69

Query: 68  TNNTLGSRVTGANVQSIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEIVFVLEGQLDVG 127
           TNNT GS VT ANVQ IPGLNTLGVS+SRIDYAPGGLNPPHTHPRA+E+VFVLEGQLDVG
Sbjct: 70  TNNTFGSLVTAANVQKIPGLNTLGVSMSRIDYAPGGLNPPHTHPRASEMVFVLEGQLDVG 129

Query: 128 FITTANVLVSKSIKKGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSIAAALFAA 187
           FITTANVL+SK+IK GE FVFPKGLVHFQKNNG+V AAVIAAFNSQLPGTQSIAA LFAA
Sbjct: 130 FITTANVLISKTIKVGETFVFPKGLVHFQKNNGQVSAAVIAAFNSQLPGTQSIAATLFAA 189

Query: 188 SPPVPDNVLTKAFQIGTKEVEKIKSRLAPK 218
            PPVPD+VLTKAFQ+GTKEV KIKSR APK
Sbjct: 190 QPPVPDHVLTKAFQVGTKEVRKIKSRFAPK 219

The following BLAST results are available for this feature:
BLAST of Cla020002 vs. Swiss-Prot
Match NameE-valueIdentityDescription
GL52_ORYSJ8.8e-8471.36Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0277500 PE=2 SV=... [more]
GL21_ARATH9.7e-8369.30Germin-like protein subfamily 2 member 1 OS=Arabidopsis thaliana GN=GLP4 PE=2 SV... [more]
GL24_ARATH2.8e-8271.09Germin-like protein subfamily 2 member 4 OS=Arabidopsis thaliana GN=GLP10 PE=2 S... [more]
RHRE_PEA3.4e-8073.71Rhicadhesin receptor OS=Pisum sativum GN=GER1 PE=1 SV=2[more]
NEC1_NICLS4.5e-8070.19Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana sanderae GN=NECI PE=1 SV=1[more]
BLAST of Cla020002 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LK24_CUCSA1.9e-10993.55Uncharacterized protein OS=Cucumis sativus GN=Csa_2G035370 PE=3 SV=1[more]
Q0MYQ7_VITVI1.2e-9583.96Germin-like protein 2 OS=Vitis vinifera GN=VIT_14s0060g00120 PE=2 SV=1[more]
A9PF73_POPTR4.2e-9382.38Rhicadhesin receptor family protein OS=Populus trichocarpa GN=POPTR_0005s00310g ... [more]
B9I6B2_POPTR2.7e-9280.95Rhicadhesin receptor family protein OS=Populus trichocarpa GN=POPTR_0013s00240g ... [more]
B9RFS5_RICCO4.7e-9280.95Rhicadhesin receptor, putative OS=Ricinus communis GN=RCOM_1437110 PE=3 SV=1[more]
BLAST of Cla020002 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449453984|ref|XP_004144736.1|2.7e-10993.55PREDICTED: germin-like protein 5-1 [Cucumis sativus][more]
gi|659070031|ref|XP_008453001.1|1.9e-10792.66PREDICTED: germin-like protein 5-1 [Cucumis melo][more]
gi|526118000|ref|NP_001267914.1|1.7e-9583.96germin-like protein 2 precursor [Vitis vinifera][more]
gi|566168527|ref|XP_006382248.1|6.1e-9382.38rhicadhesin receptor family protein [Populus trichocarpa][more]
gi|743890486|ref|XP_011039061.1|1.8e-9281.90PREDICTED: germin-like protein 5-1 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001929Germin
IPR006045Cupin_1
IPR011051RmlC_Cupin_sf
IPR014710RmlC-like_jellyroll
IPR019780Germin_Mn-BS
Vocabulary: Molecular Function
TermDefinition
GO:0030145manganese ion binding
GO:0045735nutrient reservoir activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0019430 removal of superoxide radicals
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0033609 oxalate metabolic process
biological_process GO:0010497 plasmodesmata-mediated intercellular transport
biological_process GO:2000280 regulation of root development
biological_process GO:0008150 biological_process
cellular_component GO:0005576 extracellular region
cellular_component GO:0005618 cell wall
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005575 cellular_component
cellular_component GO:0048046 apoplast
molecular_function GO:0030145 manganese ion binding
molecular_function GO:0045735 nutrient reservoir activity
molecular_function GO:0004784 superoxide dismutase activity
molecular_function GO:0046564 oxalate decarboxylase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU11638watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU65136watermelon EST collection version 2.0transcribed_cluster
WMU65988watermelon EST collection version 2.0transcribed_cluster
WMU68897watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla020002Cla020002.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU11638WMU11638transcribed_cluster
WMU68897WMU68897transcribed_cluster
WMU65988WMU65988transcribed_cluster
WMU65136WMU65136transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001929GerminPRINTSPR00325GERMINcoord: 171..186
score: 1.4E-26coord: 108..128
score: 1.4E-26coord: 138..158
score: 1.4
IPR006045Cupin 1PFAMPF00190Cupin_1coord: 62..207
score: 4.5
IPR006045Cupin 1SMARTSM00835Cupin_1_3coord: 60..208
score: 2.4
IPR011051RmlC-like cupin domainunknownSSF51182RmlC-like cupinscoord: 25..213
score: 2.03
IPR014710RmlC-like jelly roll foldGENE3DG3DSA:2.60.120.10coord: 24..213
score: 2.9
IPR019780Germin, manganese binding sitePROSITEPS00725GERMINcoord: 103..116
scor
NoneNo IPR availablePANTHERPTHR31238FAMILY NOT NAMEDcoord: 8..217
score: 3.4E
NoneNo IPR availablePANTHERPTHR31238:SF39GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 1-RELATEDcoord: 8..217
score: 3.4E