Cla019912 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla019912
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Protein ALWAYS EARLY 2 (AHRD V1 *--- ALY2_ARATH)
Location	Chr2 : 25844922 .. 25848307 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTTCAATCCAATGGATAACTTTCCAGAAGCTTTTAGACGTCAGTGCTGTTCCATCAACACAGCACCTCTCGAATACAAAGACCTACAACAAAATAGCCATCCAAATGTAAGTAGAGAATTGGAAAAAAAATCCAGCCCACACACCACTGATACATTGGTAACACACTAGAGTTCTAAGTATTTTCTAAATCAAAATTACTCTGCATGTTATTAACGTTTTGGATAATAAGATATTTATGCTATCTTCCTGATTTTAATTCTACAATTGTTTGCTGATTTGATGGCAAGTAATTAAATTTTTTTTTTCTTTTCCGATGGATAGATACATATTTCTTGTGAGTTTAATTTGATTTTGGATCATTAGTTTGACAATTGACAAGGCCAGAGTGATACATTTAAAAGCTAGACAATACTTAGATCCTTAGCATGTCTTATTCTCAACAATTGGACTTTTTTGTAACTTTATATCTTTGTTGTTAGTTATGTATGCATAGGTTCCTTTTTCTTTTTAGGTCACATTTTTGTATTACTCATTTGTTTATGCTTCTCAGAGCTCACCACATGTTTGCCCAACATTCAAATATTGCCTCTTAAATTGCTAATTGACCCAAAAGCTTAAGCTTATGGGTGAAGGCAAATTTAATATCATATCATCTAACACTCCCCCTCATTTGTGGGCTTGAAATATGAAGAAAGCCTAACAAGTGGAAACCAATTTTAATTGGGGAGGAAACAACTATGCAGGGGTTTGAACATAGAACCTCCTCAACCAACTTGCTTTGATACCATGTTAAATTGTTGATTGACCAAAAAACTTAACCTTATGGGTGAAGGAAAATTTAATATCGTATCATCTAACATTTTGTGTTTTTAAAGCTTAAGTAGTTTAGACGGCCACATCCATGTTGCATAACTATATAAGCGTGCTTTTATGTGTGCCCAAGAGGTGGTCGGTTGGTGTTGTTCTTCTAGGCTCCTAGCTATTACAGGAAGCTAAACCCCAGTTAAGCCTTGTAGCATTCTAATGGTAGAAGAGATAGGCGCCTCTTGTCAACCAATGAGACTTAAGTGATGTCATTTTATGTTGAGGCTTAAGTTTAAAAACATGATTTTTATATATTTTTTTTTTTTGAAAAAGGAAACGAGCCTCTTCGTTATAAGATAATGAAATGAGACATACAAGATAATAGTAGATACAATAAACCGAGACCAAAGGATCAGTGCACCCGGGCATCTCAACTAGGTTGACACCCCCATAACACTCTCATCATATCCAATACATGTGTACAAAAGTGACAACGAACAAAATGAGCAATAAAAACAACCAAACTAGCAAAAATACATCAAAACAAACAATCTATCCCAAAATACAACATTGGGGAATATAAAAGCCTTCCAATTGATGCAGATATCTTGAATGGAGAAGTCTTCAAAGGTCTTGGAAAGAGAGCACCATGATGAAACATTTAACCTATAAAAAAACATGATTTTTTTATTTTAATTTTTAAATATTTTGTTTATGGCAAAAAGACTATCCAATAGCCTACATTTGGCTTAAAGTTTTATTTTGGAGAATTGATTGCATTTGTCCTACATTAGTTGGTAATTAAGAAAGAATATGCCAAGGGAAGTGAATAAGGAGATAATTGCATGCATATAGGAATAGGGCCTTCGGGCCCACAAATTCACCAGGAATGACCAAACAATTATGTAAGAGATTCCTTTAAATAAGACTTTGAAGCGAGCTAAGCTTGAAAAATTGGGTTCAAAAACTGAAGTTGGATAATATGCATGTTTAGGTTGCAATCTGTCCAATTAACTAGAAACCCAAACTAATCAAAAACACCTATAGCAAAAGAACTTTAAAGTGGCCCAGGAAATAGTTATTTATACTCTGTACCTTCACAACTTATTAGCCATCTCCATGCGCCTTCCGTTAATATACATTTGTGTGTTGAATCTGTTATTTGCTTCAACTTCAAACAAACATCTTAATTGATTATGTGCATCTGTAGGTTCCTTCCACCACGTTTAACCTGAAGCAGCATAATACTTTCTCTGGGAACTCATTGCCTCTGTGGCTGATGCCTCCTGCCAATACCAGAGCACTTAGTAGCATCCCTTGTTCTTCAAATGTTTCTCAAGGATCGGGATGTGGGGCAGTTGATATTGTCAAAGGTTCGAGGGAAAAGGCACAATTGATGGTAAATGTTGCTATTGAGGTACTCACCCTCTTTCTCTTGCACATAACATCATGGATATGCAGTGTAATTGGATAAGAACTACACCTTTTACATGACTTTGTGGTGGACAACTGGTGAAACATAATGAATACTGGATTATAAGAAACCATGAAGCTTGGTTGAGAGGCAGTTTTGAACTGGATAGTGGATAGTTTTCAGATGATATTGATGGCTTTTCTCTTCCCATTTTCTACTTGAAATAATATTAGTATTGAGATAATTGTGGAGATGTACGACAAAATAAGAATTTGAATATGAGGGTGGGCGCTTTACTGACCAATTTATTTACTGGTGGTATCTGTTTTTCTAATTTGAAATTGATCTAAAACTACTCTAGCGAGTTTAGGGTTTTGTTCTTAGGCTGATTGGTACCAATGAACGCCATAATGTATTTCATGTTTTCTTTTTGAGTTTTTGTGCATATAATATCTCAGGTTGAATGCTTAGCTTCCCTCGTCTCCTTATTTCTTTGCAACTTCAACTATTATTACGTTTTCTTTTTGTGCATGAAATATCTCAGGTTGAGTGTTGGGTGCTTTGCTTTCCTGATCTCGTCATTTTCCATTTTTCCTTGCAACTTCAGTGAACAAGTTAGATCTTTAAAAAATTGATTGGCAATTTCCTTGAATTCTACGCTTTTGGTTTTCTTCACTCTTTTCTTAGTGTTGTAGTTATCGGAATGCTAGTGCTCAAGTAGTTGTCAAAGTGAGATTCCATGATACCATTAATTTTCAGGTCTTGTTGAGCAAGAACGATGGTGATGATCCTCTTACAAGTATTTGTGGTGCCTTGCATTCTTTTGATGATCAGATTTCGTCGTTTGAGGTTCAAAAACCTTCAAGCATGTCTCAAGATATGAACGATAGCCTAGGAGCCCACTTTAATCAGTTGTTCCCGTCAAAACACCTTTCTAGTGGTGCTCTATCTAGTCTGAGATCAAGACATTCCAATAGAGATTATGGAGGAATTCCGTCAAATCTAATCACTTCATGTGTGGCTACTTTGCTCATGATACAGGTAATTGTTAGTTTCTGAGTTAACTATGATTCAGGGTAAAAAACTGTTTTTTTTTCCCCTTATTGTGACAATACTGATATAGGTTATTCTTATTTTCCTGCCATTACATGCATCTAGATGA

mRNA sequence

ATGCCTTTCAATCCAATGGATAACTTTCCAGAAGCTTTTAGACGTCAGTGCTGTTCCATCAACACAGCACCTCTCGAATACAAAGACCTACAACAAAATAGCCATCCAAATGTTCCTTCCACCACGTTTAACCTGAAGCAGCATAATACTTTCTCTGGGAACTCATTGCCTCTGTGGCTGATGCCTCCTGCCAATACCAGAGCACTTAGTAGCATCCCTTGTTCTTCAAATGTTTCTCAAGGATCGGGATGTGGGGCAGTTGATATTGTCAAAGGTTCGAGGGAAAAGGCACAATTGATGGTAAATGTTGCTATTGAGGTCTTGTTGAGCAAGAACGATGGTGATGATCCTCTTACAAGTATTTGTGGTGCCTTGCATTCTTTTGATGATCAGATTTCGTCGTTTGAGGTTCAAAAACCTTCAAGCATGTCTCAAGATATGAACGATAGCCTAGGAGCCCACTTTAATCAGTTGTTCCCGTCAAAACACCTTTCTAGTGGTGCTCTATCTAGTCTGAGATCAAGACATTCCAATAGAGATTATGGAGGAATTCCGTCAAATCTAATCACTTCATGTGTGGCTACTTTGCTCATGATACAGGTTATTCTTATTTTCCTGCCATTACATGCATCTAGATGA

Coding sequence (CDS)

ATGCCTTTCAATCCAATGGATAACTTTCCAGAAGCTTTTAGACGTCAGTGCTGTTCCATCAACACAGCACCTCTCGAATACAAAGACCTACAACAAAATAGCCATCCAAATGTTCCTTCCACCACGTTTAACCTGAAGCAGCATAATACTTTCTCTGGGAACTCATTGCCTCTGTGGCTGATGCCTCCTGCCAATACCAGAGCACTTAGTAGCATCCCTTGTTCTTCAAATGTTTCTCAAGGATCGGGATGTGGGGCAGTTGATATTGTCAAAGGTTCGAGGGAAAAGGCACAATTGATGGTAAATGTTGCTATTGAGGTCTTGTTGAGCAAGAACGATGGTGATGATCCTCTTACAAGTATTTGTGGTGCCTTGCATTCTTTTGATGATCAGATTTCGTCGTTTGAGGTTCAAAAACCTTCAAGCATGTCTCAAGATATGAACGATAGCCTAGGAGCCCACTTTAATCAGTTGTTCCCGTCAAAACACCTTTCTAGTGGTGCTCTATCTAGTCTGAGATCAAGACATTCCAATAGAGATTATGGAGGAATTCCGTCAAATCTAATCACTTCATGTGTGGCTACTTTGCTCATGATACAGGTTATTCTTATTTTCCTGCCATTACATGCATCTAGATGA

Protein sequence

MPFNPMDNFPEAFRRQCCSINTAPLEYKDLQQNSHPNVPSTTFNLKQHNTFSGNSLPLWLMPPANTRALSSIPCSSNVSQGSGCGAVDIVKGSREKAQLMVNVAIEVLLSKNDGDDPLTSICGALHSFDDQISSFEVQKPSSMSQDMNDSLGAHFNQLFPSKHLSSGALSSLRSRHSNRDYGGIPSNLITSCVATLLMIQVILIFLPLHASR

Homology

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BLAST of Cla019912 vs. Swiss-Prot
Match: ALY2_ARATH (Protein ALWAYS EARLY 2 OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-07
Identity = 42/117 (35.90%), Postives = 62/117 (52.99%), Query Frame = 1


Query: 87  VDIVKGSREKAQLMVNVAIEVLLSKNDGDDPLTSICGALHSFDDQISSFEVQKPSSMS-- 146
           ++IVKGS+ +AQ MV+ AI+   S  +G+D  T I  AL    + +   ++ + S +   
Sbjct: 887 LEIVKGSKTRAQAMVDAAIKAASSVKEGEDVNTMIQEAL----ELVGKNQLLRSSMVKHH 946

Query: 147 QDMNDSLGAHFNQLFPSKHLSSGALSSLRSRHSNRDYGGIPSNLITSCVATLLMIQV 202
           + +N S+  H N   PS      A + L S+  +     +PS LITSCVAT LMIQ+
Sbjct: 947 EHVNGSIEHHHNPS-PSNGSEPVANNDLNSQDGSEKNAQMPSELITSCVATWLMIQM 998

[Close]

BLAST of Cla019912 vs. TrEMBL
Match: A0A0A0LLU7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G030020 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 1.9e-85
Identity = 165/203 (81.28%), Postives = 176/203 (86.70%), Query Frame = 1


Query: 1   MPFNPMDNFPEAFRRQCCSINTAPLEYKDLQQNSHPNVPSTTFNLKQHNTFSGNSLPLWL 60
           MPFNPMDNFPE FRRQ CSIN APLEYK+LQ+N+HPNVPSTTFNLKQHNTFSGNSL    
Sbjct: 692 MPFNPMDNFPETFRRQICSINRAPLEYKELQRNNHPNVPSTTFNLKQHNTFSGNSLA--- 751

Query: 61  MPPANTRALSSIPCSSNVSQGSGCGAVDIVKGSREKAQLMVNVAIEVLLSKNDGDDPLTS 120
             PAN RAL SIPCS NVSQGSG GAVDIV+GSREKAQ+MVNVAIEVLLSKNDGDDPLT 
Sbjct: 752 --PANARALGSIPCSLNVSQGSGRGAVDIVQGSREKAQMMVNVAIEVLLSKNDGDDPLTI 811

Query: 121 ICGALHSFDDQISSFEVQKPSSMSQDMNDSLGAHFNQLFPSKHLSSGALSSLRSRHSNRD 180
           I GALHS D+Q SSF+VQKPSSMSQ+M D LGAH  +LFPSKHLS+  LSSLRSRH NRD
Sbjct: 812 IYGALHSSDNQNSSFKVQKPSSMSQNMKDCLGAHVKELFPSKHLSTADLSSLRSRHFNRD 871

Query: 181 YGGIPSNLITSCVATLLMIQVIL 204
           Y GIPSNLITSCVATLLMIQ  +
Sbjct: 872 YRGIPSNLITSCVATLLMIQACI 889

[Close]

BLAST of Cla019912 vs. TrEMBL
Match: A0A067JU30_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23338 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.3e-18
Identity = 63/166 (37.95%), Postives = 92/166 (55.42%), Query Frame = 1


Query: 40   STTFNLKQHNTFSGNSLPLWLMPPANTRALSSIPC--SSNVSQGSGCGAVDIVKGSREKA 99
            S   NL+QH+TFSGN+LP WL PPAN      +P    S +SQ SG   V+IV+ SR KA
Sbjct: 893  SALVNLRQHHTFSGNTLPPWLKPPANISLPGGLPGLHDSFISQESGSAVVEIVRSSRHKA 952

Query: 100  QLMVNVAIEVLLSKNDGDDPLTSICGALHSFDDQISSFEVQKPSSMSQDMNDSLGAHFNQ 159
              M++ A++ + S  +G+D    I  AL S D +  + E +     S +  + + +H NQ
Sbjct: 953  HTMIDAAVQAISSMKEGEDAFMKIGEALDSIDKRQLASESKVQVIRSPEQVNGILSHQNQ 1012

Query: 160  LF--PSKHLSSGALSSLRSR-HSNRDYGGIPSNLITSCVATLLMIQ 201
                 S   ++   S  +S+ ++ +    IPS LI SCVATLLM+Q
Sbjct: 1013 FISRTSDPQANSTTSDPKSQDNAEKVETAIPSELIKSCVATLLMLQ 1058

[Close]

BLAST of Cla019912 vs. TrEMBL
Match: W9SEH2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006676 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.3e-18
Identity = 67/172 (38.95%), Postives = 95/172 (55.23%), Query Frame = 1


Query: 35  HPNVPSTTFNLKQHNTFSGNSLPLWLMPPANTRALSSIPCSSN---VSQGSGCGAVDIVK 94
           +  V S   +L+Q N++ GN+L  WL  PAN    S +P S +   + Q SG   ++IVK
Sbjct: 766 YATVSSALLDLRQRNSYRGNALLPWLKAPANIGVHSVLPGSLDSFSIPQDSGSSVIEIVK 825

Query: 95  GSREKAQLMVNVAIEVLLSKNDGDDPLTSICGALHSFDDQISSFEVQKPSSMSQDMNDSL 154
           GS  KAQ MV+ AI+   S+ +G+D    I  AL S D+ ++S      +     +N +L
Sbjct: 826 GSTVKAQAMVDAAIQAFSSRGEGEDAYAKIREALDSMDNSLTSDSRVSMNRTQDQVNGNL 885

Query: 155 GAHFNQLFPSKHLSSGAL--SSLRSR-HSNRDYGGIPSNLITSCVATLLMIQ 201
           G H NQ   S      A+  S+L SR  S ++   +PS +ITSCVATLLMIQ
Sbjct: 886 G-HRNQQLSSTSEPVHAVDSSALNSRTDSEKNEAQVPSEVITSCVATLLMIQ 936

[Close]

BLAST of Cla019912 vs. TrEMBL
Match: W9R5N4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001430 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.3e-18
Identity = 67/172 (38.95%), Postives = 95/172 (55.23%), Query Frame = 1


Query: 35  HPNVPSTTFNLKQHNTFSGNSLPLWLMPPANTRALSSIPCSSN---VSQGSGCGAVDIVK 94
           +  V S   +L+Q N++ GN+L  WL  PAN    S +P S +   + Q SG   ++IVK
Sbjct: 753 YATVSSALLDLRQRNSYPGNALLPWLKAPANIGVHSVLPGSLDSFSIPQDSGSSVIEIVK 812

Query: 95  GSREKAQLMVNVAIEVLLSKNDGDDPLTSICGALHSFDDQISSFEVQKPSSMSQDMNDSL 154
           GS  KAQ MV+ AI+   S+ +G+D    I  AL S D+ ++S      +     +N +L
Sbjct: 813 GSTVKAQAMVDAAIQAFSSRGEGEDAYAKIREALDSMDNSLTSDSRVSMNRTQDQVNGNL 872

Query: 155 GAHFNQLFPSKHLSSGAL--SSLRSR-HSNRDYGGIPSNLITSCVATLLMIQ 201
           G H NQ   S      A+  S+L SR  S ++   +PS +ITSCVATLLMIQ
Sbjct: 873 G-HRNQQLSSTSEPVHAVDSSALNSRTDSEKNEAQVPSEVITSCVATLLMIQ 923

[Close]

BLAST of Cla019912 vs. TrEMBL
Match: M5WJB8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000472mg PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.1e-16
Identity = 64/188 (34.04%), Postives = 100/188 (53.19%), Query Frame = 1


Query: 21   NTAPLEYKDLQ--QNSHPNVPSTTFNLKQHNTFSGNSLPLWLMPPANTRALSSIPCS--S 80
            N+     KD +  +  +  V S   NL+Q NT+  NSLP WL  PAN+     +P S  S
Sbjct: 905  NSGECSLKDSEPFKKHYATVSSALLNLRQRNTYPANSLPPWLKQPANSTIYGGLPSSFDS 964

Query: 81   NVSQGSGCGAVDIVKGSREKAQLMVNVAIEVLLSKNDGDDPLTSICGALHSFDDQISSFE 140
            ++SQ SG    +IV+ SR KA +MVN AI+ + S+  G+D    I  AL S D+Q    +
Sbjct: 965  SISQESGSSVAEIVEVSRSKAHMMVNAAIQAMSSRKGGEDAYVRIREALDSIDNQHLPSD 1024

Query: 141  VQKPSSMSQD-MNDSLGAHFNQLFPS---KHLSSGALSSLRSRHSNRDYGGIPSNLITSC 200
             +   + SQ+ +N +LG H NQL  S    + +S +     +  + +    + S++I++C
Sbjct: 1025 SRLSLNRSQEQVNGNLG-HRNQLISSTSDPNFTSDSPGPKPNTDTEKTEAQVLSDIISAC 1084

[Close]

BLAST of Cla019912 vs. NCBI nr
Match: gi|778666893|ref|XP_011648836.1| (PREDICTED: protein ALWAYS EARLY 3-like isoform X3 [Cucumis sativus])

HSP 1 Score: 323.6 bits (828), Expect = 2.7e-85
Identity = 165/203 (81.28%), Postives = 176/203 (86.70%), Query Frame = 1


Query: 1   MPFNPMDNFPEAFRRQCCSINTAPLEYKDLQQNSHPNVPSTTFNLKQHNTFSGNSLPLWL 60
           MPFNPMDNFPE FRRQ CSIN APLEYK+LQ+N+HPNVPSTTFNLKQHNTFSGNSL    
Sbjct: 692 MPFNPMDNFPETFRRQICSINRAPLEYKELQRNNHPNVPSTTFNLKQHNTFSGNSLA--- 751

Query: 61  MPPANTRALSSIPCSSNVSQGSGCGAVDIVKGSREKAQLMVNVAIEVLLSKNDGDDPLTS 120
             PAN RAL SIPCS NVSQGSG GAVDIV+GSREKAQ+MVNVAIEVLLSKNDGDDPLT 
Sbjct: 752 --PANARALGSIPCSLNVSQGSGRGAVDIVQGSREKAQMMVNVAIEVLLSKNDGDDPLTI 811

Query: 121 ICGALHSFDDQISSFEVQKPSSMSQDMNDSLGAHFNQLFPSKHLSSGALSSLRSRHSNRD 180
           I GALHS D+Q SSF+VQKPSSMSQ+M D LGAH  +LFPSKHLS+  LSSLRSRH NRD
Sbjct: 812 IYGALHSSDNQNSSFKVQKPSSMSQNMKDCLGAHVKELFPSKHLSTADLSSLRSRHFNRD 871

Query: 181 YGGIPSNLITSCVATLLMIQVIL 204
           Y GIPSNLITSCVATLLMIQ  +
Sbjct: 872 YRGIPSNLITSCVATLLMIQACI 889

[Close]

BLAST of Cla019912 vs. NCBI nr
Match: gi|659071560|ref|XP_008460621.1| (PREDICTED: protein ALWAYS EARLY 2-like [Cucumis melo])

HSP 1 Score: 313.2 bits (801), Expect = 3.6e-82
Identity = 163/220 (74.09%), Postives = 174/220 (79.09%), Query Frame = 1


Query: 1    MPFNPMDNFPEAFRRQCCSINTAPLEYKDLQQNSHPNV-----------------PSTTF 60
            MPFNPMDNFPE FRRQ CSIN APL YK+L++N+HPNV                 PSTTF
Sbjct: 809  MPFNPMDNFPETFRRQICSINRAPLAYKELRRNNHPNVSRELEKRSSPLTTDTSVPSTTF 868

Query: 61   NLKQHNTFSGNSLPLWLMPPANTRALSSIPCSSNVSQGSGCGAVDIVKGSREKAQLMVNV 120
            NL+QHNTFSGNSL      PANTRAL SIPCS NVSQ SGCGAVDIVKGSREKAQ+MVNV
Sbjct: 869  NLQQHNTFSGNSLA-----PANTRALGSIPCSLNVSQRSGCGAVDIVKGSREKAQMMVNV 928

Query: 121  AIEVLLSKNDGDDPLTSICGALHSFDDQISSFEVQKPSSMSQDMNDSLGAHFNQLFPSKH 180
            AIEV LSKNDGDDPLT IC ALH FD+Q SSF+VQKP S  QD  DSLGAH N+LFPSKH
Sbjct: 929  AIEVWLSKNDGDDPLTIICDALHCFDNQNSSFKVQKPLSTLQDTKDSLGAHINELFPSKH 988

Query: 181  LSSGALSSLRSRHSNRDYGGIPSNLITSCVATLLMIQVIL 204
            LS+  LSSLRSRH NRDYGGIPSNLITSCVATLLMIQ  +
Sbjct: 989  LSTADLSSLRSRHFNRDYGGIPSNLITSCVATLLMIQACI 1023

[Close]

BLAST of Cla019912 vs. NCBI nr
Match: gi|778666891|ref|XP_011648835.1| (PREDICTED: protein ALWAYS EARLY 2-like isoform X2 [Cucumis sativus])

HSP 1 Score: 312.8 bits (800), Expect = 4.7e-82
Identity = 165/220 (75.00%), Postives = 176/220 (80.00%), Query Frame = 1


Query: 1   MPFNPMDNFPEAFRRQCCSINTAPLEYKDLQQNSHPNV-----------------PSTTF 60
           MPFNPMDNFPE FRRQ CSIN APLEYK+LQ+N+HPNV                 PSTTF
Sbjct: 690 MPFNPMDNFPETFRRQICSINRAPLEYKELQRNNHPNVSRELEKRSSPLTTDTSVPSTTF 749

Query: 61  NLKQHNTFSGNSLPLWLMPPANTRALSSIPCSSNVSQGSGCGAVDIVKGSREKAQLMVNV 120
           NLKQHNTFSGNSL      PAN RAL SIPCS NVSQGSG GAVDIV+GSREKAQ+MVNV
Sbjct: 750 NLKQHNTFSGNSLA-----PANARALGSIPCSLNVSQGSGRGAVDIVQGSREKAQMMVNV 809

Query: 121 AIEVLLSKNDGDDPLTSICGALHSFDDQISSFEVQKPSSMSQDMNDSLGAHFNQLFPSKH 180
           AIEVLLSKNDGDDPLT I GALHS D+Q SSF+VQKPSSMSQ+M D LGAH  +LFPSKH
Sbjct: 810 AIEVLLSKNDGDDPLTIIYGALHSSDNQNSSFKVQKPSSMSQNMKDCLGAHVKELFPSKH 869

Query: 181 LSSGALSSLRSRHSNRDYGGIPSNLITSCVATLLMIQVIL 204
           LS+  LSSLRSRH NRDY GIPSNLITSCVATLLMIQ  +
Sbjct: 870 LSTADLSSLRSRHFNRDYRGIPSNLITSCVATLLMIQACI 904

[Close]

BLAST of Cla019912 vs. NCBI nr
Match: gi|778666888|ref|XP_011648834.1| (PREDICTED: protein ALWAYS EARLY 2-like isoform X1 [Cucumis sativus])

HSP 1 Score: 312.8 bits (800), Expect = 4.7e-82
Identity = 165/220 (75.00%), Postives = 176/220 (80.00%), Query Frame = 1


Query: 1   MPFNPMDNFPEAFRRQCCSINTAPLEYKDLQQNSHPNV-----------------PSTTF 60
           MPFNPMDNFPE FRRQ CSIN APLEYK+LQ+N+HPNV                 PSTTF
Sbjct: 692 MPFNPMDNFPETFRRQICSINRAPLEYKELQRNNHPNVSRELEKRSSPLTTDTSVPSTTF 751

Query: 61  NLKQHNTFSGNSLPLWLMPPANTRALSSIPCSSNVSQGSGCGAVDIVKGSREKAQLMVNV 120
           NLKQHNTFSGNSL      PAN RAL SIPCS NVSQGSG GAVDIV+GSREKAQ+MVNV
Sbjct: 752 NLKQHNTFSGNSLA-----PANARALGSIPCSLNVSQGSGRGAVDIVQGSREKAQMMVNV 811

Query: 121 AIEVLLSKNDGDDPLTSICGALHSFDDQISSFEVQKPSSMSQDMNDSLGAHFNQLFPSKH 180
           AIEVLLSKNDGDDPLT I GALHS D+Q SSF+VQKPSSMSQ+M D LGAH  +LFPSKH
Sbjct: 812 AIEVLLSKNDGDDPLTIIYGALHSSDNQNSSFKVQKPSSMSQNMKDCLGAHVKELFPSKH 871

Query: 181 LSSGALSSLRSRHSNRDYGGIPSNLITSCVATLLMIQVIL 204
           LS+  LSSLRSRH NRDY GIPSNLITSCVATLLMIQ  +
Sbjct: 872 LSTADLSSLRSRHFNRDYRGIPSNLITSCVATLLMIQACI 906

[Close]

BLAST of Cla019912 vs. NCBI nr
Match: gi|703131672|ref|XP_010104934.1| (hypothetical protein L484_006676 [Morus notabilis])

HSP 1 Score: 100.1 bits (248), Expect = 4.8e-18
Identity = 67/172 (38.95%), Postives = 95/172 (55.23%), Query Frame = 1


Query: 35  HPNVPSTTFNLKQHNTFSGNSLPLWLMPPANTRALSSIPCSSN---VSQGSGCGAVDIVK 94
           +  V S   +L+Q N++ GN+L  WL  PAN    S +P S +   + Q SG   ++IVK
Sbjct: 766 YATVSSALLDLRQRNSYRGNALLPWLKAPANIGVHSVLPGSLDSFSIPQDSGSSVIEIVK 825

Query: 95  GSREKAQLMVNVAIEVLLSKNDGDDPLTSICGALHSFDDQISSFEVQKPSSMSQDMNDSL 154
           GS  KAQ MV+ AI+   S+ +G+D    I  AL S D+ ++S      +     +N +L
Sbjct: 826 GSTVKAQAMVDAAIQAFSSRGEGEDAYAKIREALDSMDNSLTSDSRVSMNRTQDQVNGNL 885

Query: 155 GAHFNQLFPSKHLSSGAL--SSLRSR-HSNRDYGGIPSNLITSCVATLLMIQ 201
           G H NQ   S      A+  S+L SR  S ++   +PS +ITSCVATLLMIQ
Sbjct: 886 G-HRNQQLSSTSEPVHAVDSSALNSRTDSEKNEAQVPSEVITSCVATLLMIQ 936

The following BLAST results are available for this feature:

BLAST of Cla019912 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ALY2_ARATH	1.3e-07	35.90	Protein ALWAYS EARLY 2 OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1	[more]

BLAST of Cla019912 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLU7_CUCSA	1.9e-85	81.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G030020 PE=4 SV=1	[more]
A0A067JU30_JATCU	3.3e-18	37.95	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23338 PE=4 SV=1	[more]
W9SEH2_9ROSA	3.3e-18	38.95	Uncharacterized protein OS=Morus notabilis GN=L484_006676 PE=4 SV=1	[more]
W9R5N4_9ROSA	3.3e-18	38.95	Uncharacterized protein OS=Morus notabilis GN=L484_001430 PE=4 SV=1	[more]
M5WJB8_PRUPE	3.1e-16	34.04	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000472mg PE=4 SV=1	[more]

BLAST of Cla019912 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778666893\|ref\|XP_011648836.1\|	2.7e-85	81.28	PREDICTED: protein ALWAYS EARLY 3-like isoform X3 [Cucumis sativus]	[more]
gi\|659071560\|ref\|XP_008460621.1\|	3.6e-82	74.09	PREDICTED: protein ALWAYS EARLY 2-like [Cucumis melo]	[more]
gi\|778666891\|ref\|XP_011648835.1\|	4.7e-82	75.00	PREDICTED: protein ALWAYS EARLY 2-like isoform X2 [Cucumis sativus]	[more]
gi\|778666888\|ref\|XP_011648834.1\|	4.7e-82	75.00	PREDICTED: protein ALWAYS EARLY 2-like isoform X1 [Cucumis sativus]	[more]
gi\|703131672\|ref\|XP_010104934.1\|	4.8e-18	38.95	hypothetical protein L484_006676 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010561	LIN-9/ALY1

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated
GO:0007049	cell cycle

Vocabulary: **Cellular Component**
Term	Definition
GO:0017053	transcriptional repressor complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007049	cell cycle
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0051726	regulation of cell cycle
biological_process	GO:0000003	reproduction
cellular_component	GO:0017053	transcriptional repressor complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005654	nucleoplasm
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla019912	Cla019912.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010561	Protein LIN-9/Protein ALWAYS EARLY	PANTHER	PTHR21689	LIN-9	coord: 37..202 score: 1.1
None	No IPR available	PANTHER	PTHR21689:SF3	PROTEIN ALWAYS EARLY 1-RELATED	coord: 37..202 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla019912	Cla97C02G041320	Watermelon (97103) v2	wmwmbB316
Cla019912	Csa2G030020	Cucumber (Chinese Long) v2	cuwmB147
Cla019912	ClCG02G015590	Watermelon (Charleston Gray)	wcgwmB197
Cla019912	CSPI02G04160	Wild cucumber (PI 183967)	cpiwmB149
Cla019912	Cucsa.091220	Cucumber (Gy14) v1	cgywmB105
Cla019912	CmaCh12G010690	Cucurbita maxima (Rimu)	cmawmB170
Cla019912	Lsi11G005750	Bottle gourd (USVL1VR-Ls)	lsiwmB107
Cla019912	Cp4.1LG07g09180	Cucurbita pepo (Zucchini)	cpewmB806
Cla019912	CsGy2G004280	Cucumber (Gy14) v2	cgybwmB140
Cla019912	MELO3C004234.2	Melon (DHL92) v3.6.1	medwmB407
Cla019912	Carg17539	Silver-seed gourd	carwmB0714
Cla019912	CsaV3_2G006500	Cucumber (Chinese Long) v3	cucwmB159
Cla019912	Bhi06G001275	Wax gourd	wgowmB135

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla019912	Silver-seed gourd	carwmB0739
Cla019912	Cucurbita maxima (Rimu)	cmawmB764
Cla019912	Cucurbita maxima (Rimu)	cmawmB765
Cla019912	Cucurbita moschata (Rifu)	cmowmB156
Cla019912	Cucurbita moschata (Rifu)	cmowmB757
Cla019912	Cucurbita moschata (Rifu)	cmowmB758
Cla019912	Melon (DHL92) v3.5.1	mewmB418
Cla019912	Cucurbita pepo (Zucchini)	cpewmB113
Cla019912	Cucurbita pepo (Zucchini)	cpewmB114