Cla019873 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla019873
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr2 : 26284109 .. 26285778 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGATGGTGACGAAGGTAACCTACTTTCGGTGGACGCGAAGCCAACGAGTTCAGTCGAACAGCGTAATGAGTCTAAGGTTACAGAAGCGTTCGCCAACTTTGATAGGTATAGCATTGCAAGCAAATAGAACAGATAATGCCTCGCTGATCACCCTCCAATTCTTTAACGATACTCTTGTAGTCGGTCAACAAACAAGAGAGAATCTTGCTGCTTACTTGCTATATCCCGCGTTCTTGCACGGCTCGGCTCGTTCTTCGAGCCCTGCTTCTCCCTTCCCCCTCTCCCCGTTCTACCGTCCAAAACAAGGCCGTATGGAGTATAGCCAAGTGGTAAGGCATCGGTTTTTGGTACCGGCATGCAAAGGTTCGAATCCTTTTACTCCAGATTATTCACACCCGATCGGATCTGGCAAGATCACGAGGAATTCAACTTCCTAGCTCACTCCTCTTCAAACACCATATGATGTCTAGATTTTCGTCAACCGTCAAGCTTCTGGTTTCAGCTTCAATTTCACCATGGAAACGGTCTGGTTCCTACTTAACTTCGACATAAACAGTTTCTTCGACCTCTCCTCGTTGTTCTTCTGTGAAAGGGGTAAAATATCCTGCGTCCGTTATCTCCTCATCTTCCTATTTATAAGCCACAGCTCACTTCTACGTTTCCTATTTCCCATAGAATCTCCGGGGCTTTCCTAGCCACTCTCGTTTTGTTTTTTTATCTTCTTTGTCTGAAAATGGGTTTGATTTGCTTCACCTATTCGAATTTCTACAGATTCTTCTTTTATTCATCAAAGCTCATCCTAATCTCCGCCGAGATTACTGCCTTAGCCCTGTCCTATCATCTGTATAATGGGGTTCGTCATTTATTGACGGATTTTTCTTATCCAAAATCGGGCTCTCGAATTTGTTGTCTGTTTCAACGAGCCCTTCCGTTCATCCCACTCTTTTTACATTGTCTGAGGACACTTTTATTTTATTCTGATTCAGATTTTGTATTTTTTGGAGGATTCAAGACTTTTTTTGATAATGATAATAGGACTCCCTCCACCTCGTCCGAATGGTTCACTTATACTTCGGATTTTGACGATGATTCGGCCAGTTCGGGACGTAGTGGAAGTCTCCCATCTGTCAATCAACCGATGCCCAGTGTGGAGGGAGCGGGGCCCTCGAATGTGGCACCAGCTTCAGTGGGTACATCCGCGGGCCCAGCCCCCGAAAATAACAATAACCCAGATGTGATTGCAGCAGGGGCACCAGCTTCAGTGGGTACATCCGCGGGCCCAGCCCCCGAAAATAACAATAACCCAGATGTGATTGCAGCAGGGGCACCAGCTTCAGTGGGTACATCCGCGGGCCCAGCCCCCGAAAATAACAATAACCCAGATGTGATTGCAGCGCTAGCACTCCGTTCAGAGATTCGTGCTTTAATAGAGGAGCGCTTCCGGGTGGAAAGCGATAAGGTTCTCCGGGCCCCGCTTTCCCGCCTATTCCCCCATTGGATGACCCCATACCACCAAGATGCCGCCCATCAATTACTGGTGGAACTCGAACTAGATGATGAACTAAACCCCGCTATCCTGCAGGAGTTTCTTTCCAGATTCCAGTCTGATAGAAATTTCCTTAAGGCGGAGATCCGCCAGTGGGTGAGACAAAGGTGGGGTAACTGA

mRNA sequence

ATGCTGATGGTGACGAAGGTAACCTACTTTCGGTGGACGCGAAGCCAACGAGTTCAGTCGAACAGCGTAATGAGTCTAAGGTTACAGAAGCGTTCGCCAACTTTGATAGGTATAGCATTGCAAGCAAATAGAACAGATAATGCCTCGCTGATCACCCTCCAATTCTTTAACGATACTCTTGTAGTCGGTCAACAAACAAGAGAGAATCTTGCTGCTTACTTGCTATATCCCGCGTTCTTGCACGGCTCGGCTCGTTCTTCGAGCCCTGCTTCTCCCTTCCCCCTCTCCCCGTTCTACCGTCCAAAACAAGGCCGTATGGAGTATAGCCAAGTGGTAAGGCATCGGTTTTTGGTACCGGCATGCAAAGATTTTGTATTTTTTGGAGGATTCAAGACTTTTTTTGATAATGATAATAGGACTCCCTCCACCTCGTCCGAATGGTTCACTTATACTTCGGATTTTGACGATGATTCGGCCAGTTCGGGACGTAGTGGAAGTCTCCCATCTGTCAATCAACCGATGCCCAGTGTGGAGGGAGCGGGGCCCTCGAATGTGGCACCAGCTTCAGTGGGTACATCCGCGGGCCCAGCCCCCGAAAATAACAATAACCCAGATGTGATTGCAGCAGGGGCACCAGCTTCAGTGGGTACATCCGCGGGCCCAGCCCCCGAAAATAACAATAACCCAGATGTGATTGCAGCAGGGGCACCAGCTTCAGTGGGTACATCCGCGGGCCCAGCCCCCGAAAATAACAATAACCCAGATGTGATTGCAGCGCTAGCACTCCGTTCAGAGATTCGTGCTTTAATAGAGGAGCGCTTCCGGGTGGAAAGCGATAAGGTTCTCCGGGCCCCGCTTTCCCGCCTATTCCCCCATTGGATGACCCCATACCACCAAGATGCCGCCCATCAATTACTGGTGGAACTCGAACTAGATGATGAACTAAACCCCGCTATCCTGCAGGAGTTTCTTTCCAGATTCCAGTCTGATAGAAATTTCCTTAAGGCGGAGATCCGCCAGTGGGTGAGACAAAGGTGGGGTAACTGA

Coding sequence (CDS)

ATGCTGATGGTGACGAAGGTAACCTACTTTCGGTGGACGCGAAGCCAACGAGTTCAGTCGAACAGCGTAATGAGTCTAAGGTTACAGAAGCGTTCGCCAACTTTGATAGGTATAGCATTGCAAGCAAATAGAACAGATAATGCCTCGCTGATCACCCTCCAATTCTTTAACGATACTCTTGTAGTCGGTCAACAAACAAGAGAGAATCTTGCTGCTTACTTGCTATATCCCGCGTTCTTGCACGGCTCGGCTCGTTCTTCGAGCCCTGCTTCTCCCTTCCCCCTCTCCCCGTTCTACCGTCCAAAACAAGGCCGTATGGAGTATAGCCAAGTGGTAAGGCATCGGTTTTTGGTACCGGCATGCAAAGATTTTGTATTTTTTGGAGGATTCAAGACTTTTTTTGATAATGATAATAGGACTCCCTCCACCTCGTCCGAATGGTTCACTTATACTTCGGATTTTGACGATGATTCGGCCAGTTCGGGACGTAGTGGAAGTCTCCCATCTGTCAATCAACCGATGCCCAGTGTGGAGGGAGCGGGGCCCTCGAATGTGGCACCAGCTTCAGTGGGTACATCCGCGGGCCCAGCCCCCGAAAATAACAATAACCCAGATGTGATTGCAGCAGGGGCACCAGCTTCAGTGGGTACATCCGCGGGCCCAGCCCCCGAAAATAACAATAACCCAGATGTGATTGCAGCAGGGGCACCAGCTTCAGTGGGTACATCCGCGGGCCCAGCCCCCGAAAATAACAATAACCCAGATGTGATTGCAGCGCTAGCACTCCGTTCAGAGATTCGTGCTTTAATAGAGGAGCGCTTCCGGGTGGAAAGCGATAAGGTTCTCCGGGCCCCGCTTTCCCGCCTATTCCCCCATTGGATGACCCCATACCACCAAGATGCCGCCCATCAATTACTGGTGGAACTCGAACTAGATGATGAACTAAACCCCGCTATCCTGCAGGAGTTTCTTTCCAGATTCCAGTCTGATAGAAATTTCCTTAAGGCGGAGATCCGCCAGTGGGTGAGACAAAGGTGGGGTAACTGA

Protein sequence

MLMVTKVTYFRWTRSQRVQSNSVMSLRLQKRSPTLIGIALQANRTDNASLITLQFFNDTLVVGQQTRENLAAYLLYPAFLHGSARSSSPASPFPLSPFYRPKQGRMEYSQVVRHRFLVPACKDFVFFGGFKTFFDNDNRTPSTSSEWFTYTSDFDDDSASSGRSGSLPSVNQPMPSVEGAGPSNVAPASVGTSAGPAPENNNNPDVIAAGAPASVGTSAGPAPENNNNPDVIAAGAPASVGTSAGPAPENNNNPDVIAALALRSEIRALIEERFRVESDKVLRAPLSRLFPHWMTPYHQDAAHQLLVELELDDELNPAILQEFLSRFQSDRNFLKAEIRQWVRQRWGN

Homology

[Close]

BLAST of Cla019873 vs. TrEMBL
Match: A0A0D2LZI2_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_001G168300 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.4e-15
Identity = 55/104 (52.88%), Postives = 60/104 (57.69%), Query Frame = 1


Query: 77  PAFLHGSARSSSPASPFPLSPFYRPKQGRMEYSQVVRHRFLVPACKDFVFFGGFKTFFDN 136
           PAFLHGSARSSSPASPFPLSPF   K GRMEYSQVVRHRFLVPACK      G   F  +
Sbjct: 76  PAFLHGSARSSSPASPFPLSPFLPSKTGRMEYSQVVRHRFLVPACK------GSNPFTPD 135

Query: 137 DNRTPSTSSEWFTYTSDFDD--DSASSGRSGSLPSVNQPMPSVE 179
                 +     T T +  D        R  ++PS NQP   VE
Sbjct: 136 YEHPIGSVKNELTTTGEAADCKREGKDRRQKAIPS-NQPTRGVE 172

[Close]

BLAST of Cla019873 vs. TrEMBL
Match: A5BTN0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042149 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.1e-09
Identity = 54/125 (43.20%), Postives = 57/125 (45.60%), Query Frame = 1


Query: 1   MLMVTKVTYFRWTRSQRVQSNSVMSLRLQKRSPTLIGIALQANRTDNASLITLQFFNDTL 60
           ML VTKVT FRWTRS           R+Q  S T +                        
Sbjct: 84  MLTVTKVTDFRWTRS----------QRVQSNSVTSL------------------------ 143

Query: 61  VVGQQTRENLAAYLLYPAFLHGSARSSSPAS---PFPLSPFYRPKQGRMEYSQVVRHRFL 120
                 RENLAAYLLYP  L        P     PFP+ P    K GRMEYSQVVRHRFL
Sbjct: 144 ------RENLAAYLLYPRVLARLGSFFEPCFSLLPFPVLP---SKTGRMEYSQVVRHRFL 165

Query: 121 VPACK 123
           VPACK
Sbjct: 204 VPACK 165

[Close]

BLAST of Cla019873 vs. TrEMBL
Match: R4I232_RAPSA (Uncharacterized protein OS=Raphanus sativus GN=orf102b PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.9e-09
Identity = 42/64 (65.62%), Postives = 44/64 (68.75%), Query Frame = 1


Query: 60  LVVGQQTRENLAAYLLYPAFLHGSARSSSPASPFPLSPFYRPK-QGRMEYSQVVRHRFLV 119
           L  G     NLAAYLLY   L   A+   PA PFPL P YRPK +GRMEYSQVVRHRFLV
Sbjct: 12  LTKGTSFPGNLAAYLLYSRVLAWLAQPR-PAYPFPLPP-YRPKLRGRMEYSQVVRHRFLV 71

Query: 120 PACK 123
           PACK
Sbjct: 72  PACK 73

[Close]

BLAST of Cla019873 vs. TrEMBL
Match: G4XYN9_BRACI (Orf288 OS=Brassica carinata GN=orf288 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.7e-06
Identity = 37/68 (54.41%), Postives = 43/68 (63.24%), Query Frame = 1


Query: 138 NRTPSTSSEWFTYTSDFDDDSASSGRSGSLPSVNQPMPSVEGAGPSNVAPASVGTSAGPA 197
           N     SS+WFTYTSD  +DSASSGRS    SVNQP+   E AGPSN  PA   T+A PA
Sbjct: 111 NHQTEASSQWFTYTSDMLEDSASSGRSS---SVNQPIQR-EQAGPSNAFPAPQPTAA-PA 170

Query: 198 PENNNNPD 206
            +  N+ D
Sbjct: 171 AQQQNHLD 173

[Close]

BLAST of Cla019873 vs. TrEMBL
Match: A0A068BCT4_BRAOB (Orf287 OS=Brassica oleracea var. botrytis GN=orf287 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.7e-06
Identity = 37/68 (54.41%), Postives = 43/68 (63.24%), Query Frame = 1


Query: 138 NRTPSTSSEWFTYTSDFDDDSASSGRSGSLPSVNQPMPSVEGAGPSNVAPASVGTSAGPA 197
           N     SS+WFTYTSD  +DSASSGRS    SVNQP+   E AGPSN  PA   T+A PA
Sbjct: 110 NHQTEASSQWFTYTSDMLEDSASSGRSS---SVNQPIQR-EQAGPSNAFPAPQPTAA-PA 169

Query: 198 PENNNNPD 206
            +  N+ D
Sbjct: 170 AQQQNHLD 172

[Close]

BLAST of Cla019873 vs. NCBI nr
Match: gi|763742308|gb|KJB09807.1| (hypothetical protein B456_001G168300, partial [Gossypium raimondii])

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-14
Identity = 55/104 (52.88%), Postives = 60/104 (57.69%), Query Frame = 1


Query: 77  PAFLHGSARSSSPASPFPLSPFYRPKQGRMEYSQVVRHRFLVPACKDFVFFGGFKTFFDN 136
           PAFLHGSARSSSPASPFPLSPF   K GRMEYSQVVRHRFLVPACK      G   F  +
Sbjct: 76  PAFLHGSARSSSPASPFPLSPFLPSKTGRMEYSQVVRHRFLVPACK------GSNPFTPD 135

Query: 137 DNRTPSTSSEWFTYTSDFDD--DSASSGRSGSLPSVNQPMPSVE 179
                 +     T T +  D        R  ++PS NQP   VE
Sbjct: 136 YEHPIGSVKNELTTTGEAADCKREGKDRRQKAIPS-NQPTRGVE 172

[Close]

BLAST of Cla019873 vs. NCBI nr
Match: gi|147815496|emb|CAN65992.1| (hypothetical protein VITISV_042149 [Vitis vinifera])

HSP 1 Score: 71.6 bits (174), Expect = 3.0e-09
Identity = 54/125 (43.20%), Postives = 57/125 (45.60%), Query Frame = 1


Query: 1   MLMVTKVTYFRWTRSQRVQSNSVMSLRLQKRSPTLIGIALQANRTDNASLITLQFFNDTL 60
           ML VTKVT FRWTRS           R+Q  S T +                        
Sbjct: 84  MLTVTKVTDFRWTRS----------QRVQSNSVTSL------------------------ 143

Query: 61  VVGQQTRENLAAYLLYPAFLHGSARSSSPAS---PFPLSPFYRPKQGRMEYSQVVRHRFL 120
                 RENLAAYLLYP  L        P     PFP+ P    K GRMEYSQVVRHRFL
Sbjct: 144 ------RENLAAYLLYPRVLARLGSFFEPCFSLLPFPVLP---SKTGRMEYSQVVRHRFL 165

Query: 121 VPACK 123
           VPACK
Sbjct: 204 VPACK 165

[Close]

BLAST of Cla019873 vs. NCBI nr
Match: gi|371925901|gb|AEX57702.1| (hypothetical protein RasatMp071 (mitochondrion) [Raphanus sativus])

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-08
Identity = 42/64 (65.62%), Postives = 44/64 (68.75%), Query Frame = 1


Query: 60  LVVGQQTRENLAAYLLYPAFLHGSARSSSPASPFPLSPFYRPK-QGRMEYSQVVRHRFLV 119
           L  G     NLAAYLLY   L   A+   PA PFPL P YRPK +GRMEYSQVVRHRFLV
Sbjct: 12  LTKGTSFPGNLAAYLLYSRVLAWLAQPR-PAYPFPLPP-YRPKLRGRMEYSQVVRHRFLV 71

Query: 120 PACK 123
           PACK
Sbjct: 72  PACK 73

[Close]

BLAST of Cla019873 vs. NCBI nr
Match: gi|112253850|ref|YP_717106.1| (hypothetical protein BrnapMp007 [Brassica napus])

HSP 1 Score: 60.8 bits (146), Expect = 5.3e-06
Identity = 37/68 (54.41%), Postives = 43/68 (63.24%), Query Frame = 1


Query: 138 NRTPSTSSEWFTYTSDFDDDSASSGRSGSLPSVNQPMPSVEGAGPSNVAPASVGTSAGPA 197
           N     SS+WFTYTSD  +DSASSGRS    SVNQP+   E AGPSN  PA   T+A PA
Sbjct: 109 NHQTEASSQWFTYTSDMLEDSASSGRSS---SVNQPIQR-EQAGPSNAFPAPQPTAA-PA 168

Query: 198 PENNNNPD 206
            +  N+ D
Sbjct: 169 AQQQNHLD 171

[Close]

BLAST of Cla019873 vs. NCBI nr
Match: gi|655168422|gb|AIC83252.1| (orf287 (mitochondrion) [Brassica oleracea var. botrytis])

HSP 1 Score: 60.8 bits (146), Expect = 5.3e-06
Identity = 37/68 (54.41%), Postives = 43/68 (63.24%), Query Frame = 1


Query: 138 NRTPSTSSEWFTYTSDFDDDSASSGRSGSLPSVNQPMPSVEGAGPSNVAPASVGTSAGPA 197
           N     SS+WFTYTSD  +DSASSGRS    SVNQP+   E AGPSN  PA   T+A PA
Sbjct: 110 NHQTEASSQWFTYTSDMLEDSASSGRSS---SVNQPIQR-EQAGPSNAFPAPQPTAA-PA 169

Query: 198 PENNNNPD 206
            +  N+ D
Sbjct: 170 AQQQNHLD 172

The following BLAST results are available for this feature:

BLAST of Cla019873 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D2LZI2_GOSRA	7.4e-15	52.88	Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_001G168300 PE=...	[more]
A5BTN0_VITVI	2.1e-09	43.20	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042149 PE=4 SV=1	[more]
R4I232_RAPSA	7.9e-09	65.63	Uncharacterized protein OS=Raphanus sativus GN=orf102b PE=4 SV=1	[more]
G4XYN9_BRACI	3.7e-06	54.41	Orf288 OS=Brassica carinata GN=orf288 PE=4 SV=1	[more]
A0A068BCT4_BRAOB	3.7e-06	54.41	Orf287 OS=Brassica oleracea var. botrytis GN=orf287 PE=4 SV=1	[more]

BLAST of Cla019873 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|763742308\|gb\|KJB09807.1\|	1.1e-14	52.88	hypothetical protein B456_001G168300, partial [Gossypium raimondii]	[more]
gi\|147815496\|emb\|CAN65992.1\|	3.0e-09	43.20	hypothetical protein VITISV_042149 [Vitis vinifera]	[more]
gi\|371925901\|gb\|AEX57702.1\|	1.1e-08	65.63	hypothetical protein RasatMp071 (mitochondrion) [Raphanus sativus]	[more]
gi\|112253850\|ref\|YP_717106.1\|	5.3e-06	54.41	hypothetical protein BrnapMp007 [Brassica napus]	[more]
gi\|655168422\|gb\|AIC83252.1\|	5.3e-06	54.41	orf287 (mitochondrion) [Brassica oleracea var. botrytis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla019873	Cla019873.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla019873	Cucurbita maxima (Rimu)	cmawmB170
Cla019873	Cucurbita maxima (Rimu)	cmawmB764
Cla019873	Cucurbita moschata (Rifu)	cmowmB156
Cla019873	Cucurbita moschata (Rifu)	cmowmB757
Cla019873	Melon (DHL92) v3.5.1	mewmB418
Cla019873	Watermelon (Charleston Gray)	wcgwmB197
Cla019873	Cucumber (Chinese Long) v2	cuwmB147
Cla019873	Cucurbita pepo (Zucchini)	cpewmB113
Cla019873	Cucurbita pepo (Zucchini)	cpewmB806
Cla019873	Bottle gourd (USVL1VR-Ls)	lsiwmB107
Cla019873	Cucumber (Gy14) v2	cgybwmB140
Cla019873	Melon (DHL92) v3.6.1	medwmB407
Cla019873	Silver-seed gourd	carwmB0714
Cla019873	Silver-seed gourd	carwmB0907
Cla019873	Cucumber (Chinese Long) v3	cucwmB159
Cla019873	Watermelon (97103) v2	wmwmbB316
Cla019873	Wax gourd	wgowmB276
Cla019873	Cucumber (Gy14) v1	cgywmB105