Cla019700 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla019700
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Yippee family protein (AHRD V1 -- D7MTM3_ARALL); contains Interpro domain(s) IPR004910 Yippee-like protein
Location	Chr3 : 8721492 .. 8722699 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAGGGTTTTTCTCGTTGAGTTGGAAGGCAGGTCTTACAGATGCCGCTTCTGTAACAACAATATCGCTCTTGCCGATGACGTCCTCTCTCGGGTAATTTCCCTCTTCACTTCTTCCCTTTTATTTTCCATCCCGATTCTCCCATACATGCTACAATTTTGGTTGTTGATGAATTGAATTTCTCAACAATTTGAGCGAAAACGGGAGTTTATTTACCCCTCGAATTACATAGGTTTGCGTCAAGCTGGATTGATTTTCCTTGTATTAGCGCTATGCTTTTTTTTTCCTCTCTCTCTCTCTCTCTCTATCATGGTTTCCTGGATTAATTGATATTTCGTTCGTATTTGCTTCCAATTTTGCCGTTTGTGCCAAGTATTGTTAATATAAATATCAAGCGTATGTTGGTTGCATGGTTAAACTAATGGTACTGAGTCTCAAATGCTAAGTTGGAATTATTATTCCCACGATATTACGATCAATTTCCTATTAAATCTTTGAGATTATTGGAGGATGGTTAATCTTAGTGCTGTTTATTATCATAATGTTGTATATATAGCTCTCTCCTTTTTGTATATTCTATCGACTTGCTCATTTTGATGAATTTTTATGGTTCTGTTTTTGTCCCAGACTTTCAATTGCAGTCGAGGGAAGGCATATCTTTTCAGCAATGTGTGAGTGGCCCTGTTCTTTTTTCTTTTTTCTTTTTTTAATTATTTTATTTTCATGTGCAGCTTCAAATCTAAATGTCCAGATTATTTGTGAGGCACCATTCGATGAGAATTTCTGTAAGAGGGAGGGGATTTGATTCACTTCCCTTTAAAATCTGTTTTCTTTAGTTGAAAACATCCATATTTAGAAATATCTTGTAATGATTTGCGATTTTACTAGTATTTTTAAAGCACTCTTTATAATTCAAAAATTACGGTAATTGTTAGTTATCTTTTTCTTATCCCTCTTCTCTGTTCTTGGGCTCCGAAACAAAAGTTGAGTTCATATGACCTTACTTTCATCTGTTTCTGACCTCACATCTACAATTTAACATAAATTGAAATAATTTTACCTTTTGCCAGAGTGAATATAACATCTGGACCCAAGGTGGAGAGGTTGATGCTTTCTGGTATGCACACTGTGGAAGATATCTTTTGTTGCTGTTGCGGACAAATTCTTGGATGGAAATATGTAAGCTTTCTCCTCTCACTATCTGA

mRNA sequence

ATGGGTAGGGTTTTTCTCGTTGAGTTGGAAGGCAGGTCTTACAGATGCCGCTTCTGTAACAACAATATCGCTCTTGCCGATGACGTCCTCTCTCGGAGTGAATATAACATCTGGACCCAAGGTGGAGAGGTTGATGCTTTCTGGTATGCACACTGTGGAAGATATCTTTTGTTGCTGTTGCGGACAAATTCTTGGATGGAAATATGTAAGCTTTCTCCTCTCACTATCTGA

Coding sequence (CDS)

ATGGGTAGGGTTTTTCTCGTTGAGTTGGAAGGCAGGTCTTACAGATGCCGCTTCTGTAACAACAATATCGCTCTTGCCGATGACGTCCTCTCTCGGAGTGAATATAACATCTGGACCCAAGGTGGAGAGGTTGATGCTTTCTGGTATGCACACTGTGGAAGATATCTTTTGTTGCTGTTGCGGACAAATTCTTGGATGGAAATATGTAAGCTTTCTCCTCTCACTATCTGA

Protein sequence

MGRVFLVELEGRSYRCRFCNNNIALADDVLSRSEYNIWTQGGEVDAFWYAHCGRYLLLLLRTNSWMEICKLSPLTI

Homology

[Close]

BLAST of Cla019700 vs. Swiss-Prot
Match: YIPL7_ARATH (Protein yippee-like At5g53940 OS=Arabidopsis thaliana GN=At5g53940 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-07
Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 1


Query: 1  MGRVFLVELEGRSYRCRFCNNNIALADDVLSRS 34
          MGR+F VELEGRSYRCRFC  ++AL DD++SRS
Sbjct: 1  MGRIFTVELEGRSYRCRFCRTHLALPDDLVSRS 33

[Close]

BLAST of Cla019700 vs. Swiss-Prot
Match: YIPL3_ARATH (Protein yippee-like At3g11230 OS=Arabidopsis thaliana GN=At3g11230 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 7.5e-06
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 1


Query: 1  MGRVFLVELEGRSYRCRFCNNNIALADDVLSRS 34
          MGR+FLV LEG+SY C+ C  N+AL DDV+S+S
Sbjct: 1  MGRLFLVNLEGKSYSCKHCKTNLALCDDVVSKS 33

[Close]

BLAST of Cla019700 vs. TrEMBL
Match: A0A0A0LRZ0_CUCSA (Protein yippee-like OS=Cucumis sativus GN=Csa_1G075050 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.0e-09
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 1


Query: 1  MGRVFLVELEGRSYRCRFCNNNIALADDVLSRS 34
          MGRVFLVELEGRSYRCRFCNNN+ALADDVLSR+
Sbjct: 1  MGRVFLVELEGRSYRCRFCNNNVALADDVLSRT 33

[Close]

BLAST of Cla019700 vs. TrEMBL
Match: A0A059CDF0_EUCGR (Protein yippee-like OS=Eucalyptus grandis GN=EUGRSUZ_D00603 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.8e-06
Identity = 27/33 (81.82%), Postives = 31/33 (93.94%), Query Frame = 1


Query: 1  MGRVFLVELEGRSYRCRFCNNNIALADDVLSRS 34
          MGRVFLVEL GR+YRCRFCN+ +ALADDVLS+S
Sbjct: 1  MGRVFLVELGGRAYRCRFCNSPLALADDVLSKS 33

[Close]

BLAST of Cla019700 vs. TrEMBL
Match: A0A059CE49_EUCGR (Protein yippee-like OS=Eucalyptus grandis GN=EUGRSUZ_D00603 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.8e-06
Identity = 27/33 (81.82%), Postives = 31/33 (93.94%), Query Frame = 1


Query: 1  MGRVFLVELEGRSYRCRFCNNNIALADDVLSRS 34
          MGRVFLVEL GR+YRCRFCN+ +ALADDVLS+S
Sbjct: 1  MGRVFLVELGGRAYRCRFCNSPLALADDVLSKS 33

[Close]

BLAST of Cla019700 vs. TrEMBL
Match: A0A0K9R312_SPIOL (Protein yippee-like OS=Spinacia oleracea GN=SOVF_119110 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.8e-06
Identity = 25/33 (75.76%), Postives = 32/33 (96.97%), Query Frame = 1


Query: 1  MGRVFLVELEGRSYRCRFCNNNIALADDVLSRS 34
          MGRVFLVEL+G++YRCRFC++ +ALA+DVLSRS
Sbjct: 1  MGRVFLVELDGKAYRCRFCDSPLALAEDVLSRS 33

[Close]

BLAST of Cla019700 vs. TrEMBL
Match: A0A072VA37_MEDTR (Protein yippee-like OS=Medicago truncatula GN=MTR_2g078670 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.9e-06
Identity = 23/33 (69.70%), Postives = 31/33 (93.94%), Query Frame = 1


Query: 1  MGRVFLVELEGRSYRCRFCNNNIALADDVLSRS 34
          MGR+F+VELEGRSYRC+FC  ++ALADD++SR+
Sbjct: 1  MGRIFVVELEGRSYRCKFCRTHLALADDLISRA 33

[Close]

BLAST of Cla019700 vs. NCBI nr
Match: gi|449457755|ref|XP_004146613.1| (PREDICTED: protein yippee-like At5g53940 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 4.2e-09
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 1


Query: 1  MGRVFLVELEGRSYRCRFCNNNIALADDVLSRS 34
          MGRVFLVELEGRSYRCRFCNNN+ALADDVLSR+
Sbjct: 1  MGRVFLVELEGRSYRCRFCNNNVALADDVLSRT 33

[Close]

BLAST of Cla019700 vs. NCBI nr
Match: gi|659068112|ref|XP_008442812.1| (PREDICTED: protein yippee-like At5g53940 [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 5.5e-09
Identity = 30/33 (90.91%), Postives = 33/33 (100.00%), Query Frame = 1


Query: 1  MGRVFLVELEGRSYRCRFCNNNIALADDVLSRS 34
          MGR+FLVELEGRSYRCRFCNNN+ALADDVLSR+
Sbjct: 1  MGRIFLVELEGRSYRCRFCNNNVALADDVLSRT 33

[Close]

BLAST of Cla019700 vs. NCBI nr
Match: gi|702318628|ref|XP_010052289.1| (PREDICTED: protein yippee-like At5g53940 isoform X2 [Eucalyptus grandis])

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-06
Identity = 27/33 (81.82%), Postives = 31/33 (93.94%), Query Frame = 1


Query: 1  MGRVFLVELEGRSYRCRFCNNNIALADDVLSRS 34
          MGRVFLVEL GR+YRCRFCN+ +ALADDVLS+S
Sbjct: 1  MGRVFLVELGGRAYRCRFCNSPLALADDVLSKS 33

[Close]

BLAST of Cla019700 vs. NCBI nr
Match: gi|657959700|ref|XP_008371402.1| (PREDICTED: protein yippee-like At5g53940 isoform X1 [Malus domestica])

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-06
Identity = 25/33 (75.76%), Postives = 32/33 (96.97%), Query Frame = 1


Query: 1  MGRVFLVELEGRSYRCRFCNNNIALADDVLSRS 34
          MGR+FL+EL+GR+YRCRFC++ +ALADDVLSRS
Sbjct: 1  MGRIFLIELDGRTYRCRFCDSALALADDVLSRS 33

[Close]

BLAST of Cla019700 vs. NCBI nr
Match: gi|702318621|ref|XP_010052288.1| (PREDICTED: protein yippee-like At5g53940 isoform X1 [Eucalyptus grandis])

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-06
Identity = 27/33 (81.82%), Postives = 31/33 (93.94%), Query Frame = 1


Query: 1  MGRVFLVELEGRSYRCRFCNNNIALADDVLSRS 34
          MGRVFLVEL GR+YRCRFCN+ +ALADDVLS+S
Sbjct: 1  MGRVFLVELGGRAYRCRFCNSPLALADDVLSKS 33

The following BLAST results are available for this feature:

BLAST of Cla019700 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YIPL7_ARATH	1.4e-07	72.73	Protein yippee-like At5g53940 OS=Arabidopsis thaliana GN=At5g53940 PE=2 SV=1	[more]
YIPL3_ARATH	7.5e-06	63.64	Protein yippee-like At3g11230 OS=Arabidopsis thaliana GN=At3g11230 PE=2 SV=1	[more]

BLAST of Cla019700 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRZ0_CUCSA	3.0e-09	93.94	Protein yippee-like OS=Cucumis sativus GN=Csa_1G075050 PE=3 SV=1	[more]
A0A059CDF0_EUCGR	1.8e-06	81.82	Protein yippee-like OS=Eucalyptus grandis GN=EUGRSUZ_D00603 PE=3 SV=1	[more]
A0A059CE49_EUCGR	1.8e-06	81.82	Protein yippee-like OS=Eucalyptus grandis GN=EUGRSUZ_D00603 PE=3 SV=1	[more]
A0A0K9R312_SPIOL	6.8e-06	75.76	Protein yippee-like OS=Spinacia oleracea GN=SOVF_119110 PE=3 SV=1	[more]
A0A072VA37_MEDTR	8.9e-06	69.70	Protein yippee-like OS=Medicago truncatula GN=MTR_2g078670 PE=3 SV=1	[more]

BLAST of Cla019700 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457755\|ref\|XP_004146613.1\|	4.2e-09	93.94	PREDICTED: protein yippee-like At5g53940 [Cucumis sativus]	[more]
gi\|659068112\|ref\|XP_008442812.1\|	5.5e-09	90.91	PREDICTED: protein yippee-like At5g53940 [Cucumis melo]	[more]
gi\|702318628\|ref\|XP_010052289.1\|	2.6e-06	81.82	PREDICTED: protein yippee-like At5g53940 isoform X2 [Eucalyptus grandis]	[more]
gi\|657959700\|ref\|XP_008371402.1\|	2.6e-06	75.76	PREDICTED: protein yippee-like At5g53940 isoform X1 [Malus domestica]	[more]
gi\|702318621\|ref\|XP_010052288.1\|	2.6e-06	81.82	PREDICTED: protein yippee-like At5g53940 isoform X1 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0000151	ubiquitin ligase complex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0046872	metal ion binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU38757	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU68116	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla019700	Cla019700.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU38757	WMU38757	transcribed_cluster
WMU68116	WMU68116	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR13848	FAMILY NOT NAMED	coord: 1..33 score: 1.6
None	No IPR available	PANTHER	PTHR13848:SF13	SUBFAMILY NOT NAMED	coord: 1..33 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla019700	Cla97C03G059340	Watermelon (97103) v2	wmwmbB124
Cla019700	ClCG03G008050	Watermelon (Charleston Gray)	wcgwmB223
Cla019700	CSPI01G12320	Wild cucumber (PI 183967)	cpiwmB026
Cla019700	Cucsa.126870	Cucumber (Gy14) v1	cgywmB207
Cla019700	CmaCh13G006280	Cucurbita maxima (Rimu)	cmawmB186
Cla019700	CmoCh18G003660	Cucurbita moschata (Rifu)	cmowmB362
Cla019700	Lsi02G007750	Bottle gourd (USVL1VR-Ls)	lsiwmB188
Cla019700	Cp4.1LG20g04480	Cucurbita pepo (Zucchini)	cpewmB508
Cla019700	Cp4.1LG09g08190	Cucurbita pepo (Zucchini)	cpewmB024
Cla019700	CsGy1G012350	Cucumber (Gy14) v2	cgybwmB025
Cla019700	Carg14611	Silver-seed gourd	carwmB0141
Cla019700	Carg21514	Silver-seed gourd	carwmB0949
Cla019700	CsaV3_1G012500	Cucumber (Chinese Long) v3	cucwmB029
Cla019700	Bhi08G001866	Wax gourd	wgowmB472

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla019700	Melon (DHL92) v3.6.1	medwmB144
Cla019700	Melon (DHL92) v3.6.1	medwmB549
Cla019700	Silver-seed gourd	carwmB0544
Cla019700	Silver-seed gourd	carwmB0640
Cla019700	Cucumber (Chinese Long) v3	cucwmB506
Cla019700	Watermelon (97103) v2	wmwmbB113
Cla019700	Wax gourd	wgowmB418
Cla019700	Watermelon (97103) v1	wmwmB084
Cla019700	Cucumber (Gy14) v1	cgywmB022
Cla019700	Cucurbita maxima (Rimu)	cmawmB370
Cla019700	Cucurbita maxima (Rimu)	cmawmB622
Cla019700	Cucurbita maxima (Rimu)	cmawmB819
Cla019700	Cucurbita moschata (Rifu)	cmowmB174
Cla019700	Cucurbita moschata (Rifu)	cmowmB613
Cla019700	Cucurbita moschata (Rifu)	cmowmB809
Cla019700	Melon (DHL92) v3.5.1	mewmB147
Cla019700	Melon (DHL92) v3.5.1	mewmB562
Cla019700	Watermelon (Charleston Gray)	wcgwmB125
Cla019700	Cucumber (Chinese Long) v2	cuwmB023
Cla019700	Cucumber (Chinese Long) v2	cuwmB480
Cla019700	Cucurbita pepo (Zucchini)	cpewmB069
Cla019700	Cucurbita pepo (Zucchini)	cpewmB478
Cla019700	Bottle gourd (USVL1VR-Ls)	lsiwmB136
Cla019700	Cucumber (Gy14) v2	cgybwmB451