Cla019608 (gene) Watermelon (97103) v1

Overview
NameCla019608
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
Description30S ribosomal protein S11 (AHRD V1 ***- RS11_CAUSK); contains Interpro domain(s) IPR001971 Ribosomal protein S11
LocationChr3 : 7632635 .. 7633966 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTGGCTCAAGGAGGAAGACCAGGGAACCTAAGGAAGAAACTGTGACTCTCGGTCCTTCAGTGAGGGAGGGCGAGCATGTGTTTGGCGTGGCTCACATTTTTGCCTCATTTAACGACACATTTATTGTAAGTGGAAAGATGTACATGATTTTGGTTGCTTGTTCGGTAACAGAAAGATGACTTAGTTGTTTCAATCGCAGCATGTGACTGATCTTTCTGGGAGGGAAACTCTTGTCCGCATTACAGGTGAACCAATTGAATATGTTACTGCCTTTTTTATACTCGTAAATTGAATGCTTGAAACTATAAATCTAGGATTTCTTCTTCAGTTCTTAGTTTTTGTTCCTACCACTATGTATTTTCATTGATTGGTCCACGTAACTAAGTAATATTTATAAATACTGTTCAGGACCATTAAATCAAGGTCTAGACTAGCTTAGTACTTCAACCTTTATATGCACGATAAAGTATGAAGAGCTTCTGCATTTATGAATATGATGTATGGTATTAGATTGTTTATAATTGTCTGAATTCACTATGCTCACTTCAGAGCTCTCTAATGGAGTGGAAGTTGTAGATTGGGGAAGTGTCCCTTTATAGAAAAAGTGTTATGCTATATTTTTTATTTCCTTTTATATATATATAGTTCATGTAGAATCTGGCAAGTGTAATTCTGTGTTTTGATGACCATAGGTGGTATGAAGGTGAAAGCTGACAGGGATGAATCCTCCCCATATGCAGCTATGCTTGCAGCACAGGATGTTTCACAGAGATGCAAGGTTCCAACCTCTTTTAATAGTTTCTTAATTGCCCTTTCCCCCATTTTTATGGATTGTAATCATTATACCTGACTGACTTTGAAGGTTTCCTTTGGAACATATGATATCCCATTTTCTTCATTTCATCTGTACTGTTTGTGACTGTCTTTTTATCACTGAACAATATCACTTTTGTGTTGCCATATTTTTCACAAAACAGGAACTCGGTATTACTGCCCTTCATATTAAACTGCGTGCTACTGGAGGAAACAAGACCAAAACACCTGGCCCAGGTGCCCAGTCTGCACTTCGTGCTCTTGCTCGTTCTGGAATGAGGATTGGACGCATAGGTGAAGCCCTTGTTTCTGTAGCATTGACGAATTCGGATGAAAATACATACATATACATCAATGCTGAACATTAACACTTCACTTTTAAACTGTATTTAACCGCGTGCTCTATTAGGTGTTAATCTAACTCCCATTTGCCTTTTTGATATATTCCAGAGGATGTGACTCCAATTCCAACAGATAGCACTCGCAGAAAGGGTGGAAGAAGAGGAAGAAGGCTGTAA

mRNA sequence

TCTGGCTCAAGGAGGAAGACCAGGGAACCTAAGGAAGAAACTGTGACTCTCGGTCCTTCAGTGAGGGAGGGCGAGCATGTGTTTGGCGTGGCTCACATTTTTGCCTCATTTAACGACACATTTATTCATGTGACTGATCTTTCTGGGAGGGAAACTCTTGTCCGCATTACAGGTGGTATGAAGGTGAAAGCTGACAGGGATGAATCCTCCCCATATGCAGCTATGCTTGCAGCACAGGATGTTTCACAGAGATGCAAGGAACTCGGTATTACTGCCCTTCATATTAAACTGCGTGCTACTGGAGGAAACAAGACCAAAACACCTGGCCCAGGTGCCCAGTCTGCACTTCGTGCTCTTGCTCGTTCTGGAATGAGGATTGGACGCATAGAGGATGTGACTCCAATTCCAACAGATAGCACTCGCAGAAAGGGTGGAAGAAGAGGAAGAAGGCTGTAA

Coding sequence (CDS)

TCTGGCTCAAGGAGGAAGACCAGGGAACCTAAGGAAGAAACTGTGACTCTCGGTCCTTCAGTGAGGGAGGGCGAGCATGTGTTTGGCGTGGCTCACATTTTTGCCTCATTTAACGACACATTTATTCATGTGACTGATCTTTCTGGGAGGGAAACTCTTGTCCGCATTACAGGTGGTATGAAGGTGAAAGCTGACAGGGATGAATCCTCCCCATATGCAGCTATGCTTGCAGCACAGGATGTTTCACAGAGATGCAAGGAACTCGGTATTACTGCCCTTCATATTAAACTGCGTGCTACTGGAGGAAACAAGACCAAAACACCTGGCCCAGGTGCCCAGTCTGCACTTCGTGCTCTTGCTCGTTCTGGAATGAGGATTGGACGCATAGAGGATGTGACTCCAATTCCAACAGATAGCACTCGCAGAAAGGGTGGAAGAAGAGGAAGAAGGCTGTAA

Protein sequence

SGSRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Homology
[Close]
BLAST of Cla019608 vs. Swiss-Prot
Match: RS142_ARATH (40S ribosomal protein S14-2 OS=Arabidopsis thaliana GN=RPS14B PE=1 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 2.3e-75
Identity = 140/149 (93.96%), Postives = 144/149 (96.64%), Query Frame = 1 

Query: 3   SRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 62
           S+RKT+EPK ETVTLGPSVREGE VFGV HIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SKRKTKEPKVETVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 63  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 122
           KADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 123 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           GM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 122 GMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]
BLAST of Cla019608 vs. Swiss-Prot
Match: RS141_MAIZE (40S ribosomal protein S14 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.5e-74
Identity = 142/149 (95.30%), Postives = 144/149 (96.64%), Query Frame = 1 

Query: 3   SRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 62
           SRRKTREPKEE V LGP+VREGE VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SRRKTREPKEENV-LGPTVREGEFVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 63  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 122
           KADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 123 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           GM+IGRIEDVTP+PTDSTRRKGGRRGRRL
Sbjct: 122 GMKIGRIEDVTPVPTDSTRRKGGRRGRRL 149

[Close]
BLAST of Cla019608 vs. Swiss-Prot
Match: RS141_ARATH (40S ribosomal protein S14-1 OS=Arabidopsis thaliana GN=RPS14A PE=1 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 2.0e-74
Identity = 138/149 (92.62%), Postives = 143/149 (95.97%), Query Frame = 1 

Query: 3   SRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 62
           S+RKT+EPK + VTLGPSVREGE VFGV HIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SKRKTKEPKVDVVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 63  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 122
           KADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 123 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           GM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 122 GMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]
BLAST of Cla019608 vs. Swiss-Prot
Match: RS142_MAIZE (40S ribosomal protein S14 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 2.0e-74
Identity = 140/148 (94.59%), Postives = 144/148 (97.30%), Query Frame = 1 

Query: 4   RRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 63
           R+KTREPKEE V LGP+VREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK
Sbjct: 4   RKKTREPKEENV-LGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 63

Query: 64  ADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSG 123
           ADRDESSPYAAMLA+QDV+QRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSG
Sbjct: 64  ADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSG 123

Query: 124 MRIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           M+IGRIEDVTP+PTDSTRRKGGRRGRRL
Sbjct: 124 MKIGRIEDVTPVPTDSTRRKGGRRGRRL 150

[Close]
BLAST of Cla019608 vs. Swiss-Prot
Match: RS143_ARATH (40S ribosomal protein S14-3 OS=Arabidopsis thaliana GN=RPS14C PE=2 SV=2)

HSP 1 Score: 279.3 bits (713), Expect = 2.6e-74
Identity = 137/149 (91.95%), Postives = 143/149 (95.97%), Query Frame = 1 

Query: 3   SRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 62
           S+RKT+EPK E VTLGP+VREGE VFGV H+FASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SKRKTKEPKVENVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 63  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 122
           KADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 123 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           GM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 122 GMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]
BLAST of Cla019608 vs. TrEMBL
Match: A0A0A0LGP6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G777590 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 6.6e-77
Identity = 148/149 (99.33%), Postives = 149/149 (100.00%), Query Frame = 1 

Query: 3   SRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 62
           SRRKTREPKEETVTLGP+VREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 63  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 122
           KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 123 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           GMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 122 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]
BLAST of Cla019608 vs. TrEMBL
Match: A9PBW7_POPTR (40S ribosomal protein S14-3 OS=Populus trichocarpa GN=POPTR_0009s02450g PE=2 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 5.6e-76
Identity = 146/149 (97.99%), Postives = 148/149 (99.33%), Query Frame = 1 

Query: 3   SRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 62
           SRRKTREPKEE VTLGP+VREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SRRKTREPKEENVTLGPTVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 63  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 122
           KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 123 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           GM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 122 GMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]
BLAST of Cla019608 vs. TrEMBL
Match: A0A0J8BZ19_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g159150 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 7.3e-76
Identity = 145/149 (97.32%), Postives = 149/149 (100.00%), Query Frame = 1 

Query: 3   SRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 62
           SRRKT+EPKEETVTLGP+V+EGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SRRKTKEPKEETVTLGPTVKEGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 63  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 122
           KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 123 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           GM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 122 GMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]
BLAST of Cla019608 vs. TrEMBL
Match: V4T1L5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013022mg PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.2e-75
Identity = 145/149 (97.32%), Postives = 148/149 (99.33%), Query Frame = 1 

Query: 3   SRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 62
           SRRKTREPKEE VTLGP+VR+GEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 63  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 122
           KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 123 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           GM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 122 GMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]
BLAST of Cla019608 vs. TrEMBL
Match: A0A067FSW4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031952mg PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.2e-75
Identity = 145/149 (97.32%), Postives = 148/149 (99.33%), Query Frame = 1 

Query: 3   SRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 62
           SRRKTREPKEE VTLGP+VR+GEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 63  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 122
           KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 123 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           GM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 122 GMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]
BLAST of Cla019608 vs. NCBI nr
Match: gi|449459350|ref|XP_004147409.1| (PREDICTED: 40S ribosomal protein S14-2-like [Cucumis sativus])

HSP 1 Score: 298.5 bits (763), Expect = 6.5e-78
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 1 

Query: 1   SGSRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 60
           SGSRRKTREPKEETVTLGP+VREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM
Sbjct: 2   SGSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 61

Query: 61  KVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 120
           KVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA
Sbjct: 62  KVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 121

Query: 121 RSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           RSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 122 RSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 152

[Close]
BLAST of Cla019608 vs. NCBI nr
Match: gi|449462944|ref|XP_004149195.1| (PREDICTED: 40S ribosomal protein S14-2 [Cucumis sativus])

HSP 1 Score: 294.7 bits (753), Expect = 9.4e-77
Identity = 148/149 (99.33%), Postives = 149/149 (100.00%), Query Frame = 1 

Query: 3   SRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 62
           SRRKTREPKEETVTLGP+VREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 63  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 122
           KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 123 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           GMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 122 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]
BLAST of Cla019608 vs. NCBI nr
Match: gi|224106672|ref|XP_002314245.1| (40S ribosomal protein S14-3 [Populus trichocarpa])

HSP 1 Score: 291.6 bits (745), Expect = 8.0e-76
Identity = 146/149 (97.99%), Postives = 148/149 (99.33%), Query Frame = 1 

Query: 3   SRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 62
           SRRKTREPKEE VTLGP+VREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SRRKTREPKEENVTLGPTVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 63  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 122
           KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 123 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           GM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 122 GMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]
BLAST of Cla019608 vs. NCBI nr
Match: gi|743935085|ref|XP_011011897.1| (PREDICTED: 40S ribosomal protein S14-like isoform X1 [Populus euphratica])

HSP 1 Score: 291.2 bits (744), Expect = 1.0e-75
Identity = 146/149 (97.99%), Postives = 147/149 (98.66%), Query Frame = 1 

Query: 3   SRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 62
           SRRKTREPKEE VTLGP+VREGEH FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 3   SRRKTREPKEENVTLGPTVREGEHAFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 62

Query: 63  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 122
           KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 63  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 122

Query: 123 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           GMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 123 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 151

[Close]
BLAST of Cla019608 vs. NCBI nr
Match: gi|731344994|ref|XP_010683691.1| (PREDICTED: 40S ribosomal protein S14-2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 291.2 bits (744), Expect = 1.0e-75
Identity = 145/149 (97.32%), Postives = 149/149 (100.00%), Query Frame = 1 

Query: 3   SRRKTREPKEETVTLGPSVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 62
           SRRKT+EPKEETVTLGP+V+EGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SRRKTKEPKEETVTLGPTVKEGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 63  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 122
           KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 123 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           GM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 122 GMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

The following BLAST results are available for this feature:
BLAST of Cla019608 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS142_ARATH2.3e-7593.9640S ribosomal protein S14-2 OS=Arabidopsis thaliana GN=RPS14B PE=1 SV=1[more]
RS141_MAIZE1.5e-7495.3040S ribosomal protein S14 OS=Zea mays PE=3 SV=1[more]
RS141_ARATH2.0e-7492.6240S ribosomal protein S14-1 OS=Arabidopsis thaliana GN=RPS14A PE=1 SV=1[more]
RS142_MAIZE2.0e-7494.5940S ribosomal protein S14 OS=Zea mays PE=3 SV=1[more]
RS143_ARATH2.6e-7491.9540S ribosomal protein S14-3 OS=Arabidopsis thaliana GN=RPS14C PE=2 SV=2[more]
BLAST of Cla019608 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGP6_CUCSA6.6e-7799.33Uncharacterized protein OS=Cucumis sativus GN=Csa_3G777590 PE=3 SV=1[more]
A9PBW7_POPTR5.6e-7697.9940S ribosomal protein S14-3 OS=Populus trichocarpa GN=POPTR_0009s02450g PE=2 SV=... [more]
A0A0J8BZ19_BETVU7.3e-7697.32Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g159150 PE=3 S... [more]
V4T1L5_9ROSI1.2e-7597.32Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013022mg PE=3 SV=1[more]
A0A067FSW4_CITSI1.2e-7597.32Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031952mg PE=3 SV=1[more]
BLAST of Cla019608 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449459350|ref|XP_004147409.1|6.5e-7899.34PREDICTED: 40S ribosomal protein S14-2-like [Cucumis sativus][more]
gi|449462944|ref|XP_004149195.1|9.4e-7799.33PREDICTED: 40S ribosomal protein S14-2 [Cucumis sativus][more]
gi|224106672|ref|XP_002314245.1|8.0e-7697.9940S ribosomal protein S14-3 [Populus trichocarpa][more]
gi|743935085|ref|XP_011011897.1|1.0e-7597.99PREDICTED: 40S ribosomal protein S14-like isoform X1 [Populus euphratica][more]
gi|731344994|ref|XP_010683691.1|1.0e-7597.32PREDICTED: 40S ribosomal protein S14-2 [Beta vulgaris subsp. vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001971Ribosomal_S11
IPR018102Ribosomal_S11_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0000028 ribosomal small subunit assembly
cellular_component GO:0005840 ribosome
cellular_component GO:0022627 cytosolic small ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0005515 protein binding
molecular_function GO:0005525 GTP binding
molecular_function GO:0048027 mRNA 5'-UTR binding
molecular_function GO:0070181 small ribosomal subunit rRNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU09001watermelon EST collection version 2.0transcribed_cluster
WMU12573watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU25580watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU25643watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU25707watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU25713watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU26558watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU35695watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU37949watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU37972watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU38053watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU38103watermelon EST collection version 2.0transcribed_cluster
WMU38325watermelon EST collection version 2.0transcribed_cluster
WMU39293watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU39527watermelon EST collection version 2.0transcribed_cluster
WMU47044watermelon EST collection version 2.0transcribed_cluster
WMU47688watermelon EST collection version 2.0transcribed_cluster
WMU51574watermelon EST collection version 2.0transcribed_cluster
WMU60089watermelon EST collection version 2.0transcribed_cluster
WMU64001watermelon EST collection version 2.0transcribed_cluster
WMU71648watermelon EST collection version 2.0transcribed_cluster
WMU74684watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla019608Cla019608.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU12573WMU12573transcribed_cluster
WMU64001WMU64001transcribed_cluster
WMU71648WMU71648transcribed_cluster
WMU25707WMU25707transcribed_cluster
WMU35695WMU35695transcribed_cluster
WMU37972WMU37972transcribed_cluster
WMU47044WMU47044transcribed_cluster
WMU09001WMU09001transcribed_cluster
WMU47688WMU47688transcribed_cluster
WMU26558WMU26558transcribed_cluster
WMU38053WMU38053transcribed_cluster
WMU39527WMU39527transcribed_cluster
WMU51574WMU51574transcribed_cluster
WMU39293WMU39293transcribed_cluster
WMU25580WMU25580transcribed_cluster
WMU25643WMU25643transcribed_cluster
WMU37949WMU37949transcribed_cluster
WMU38103WMU38103transcribed_cluster
WMU25713WMU25713transcribed_cluster
WMU74684WMU74684transcribed_cluster
WMU38325WMU38325transcribed_cluster
WMU60089WMU60089transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001971Ribosomal protein S11GENE3DG3DSA:3.30.420.80coord: 18..148
score: 2.2
IPR001971Ribosomal protein S11HAMAPMF_01310Ribosomal_S11coord: 4..148
score: 21
IPR001971Ribosomal protein S11PIRPIRSF002131RPS11p_RPS11a_RPS14e_RPS11ocoord: 2..148
score: 3.0
IPR001971Ribosomal protein S11PANTHERPTHR1175940S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11coord: 3..151
score: 6.2E
IPR001971Ribosomal protein S11PFAMPF00411Ribosomal_S11coord: 29..147
score: 9.7
IPR018102Ribosomal S11, conserved sitePROSITEPS00054RIBOSOMAL_S11coord: 116..138
scor
NoneNo IPR availablePANTHERPTHR11759:SF1240S RIBOSOMAL PROTEIN S14-1-RELATEDcoord: 3..151
score: 6.2E
NoneNo IPR availableunknownSSF53137Translational machinery componentscoord: 24..149
score: 1.61

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla019608Csa1G448960Cucumber (Chinese Long) v2cuwmB009
Cla019608MELO3C002715Melon (DHL92) v3.5.1mewmB147
Cla019608CSPI01G21430Wild cucumber (PI 183967)cpiwmB011
Cla019608Cucsa.212430Cucumber (Gy14) v1cgywmB408
Cla019608CmaCh18G004610Cucurbita maxima (Rimu)cmawmB370
Cla019608CmoCh18G004380Cucurbita moschata (Rifu)cmowmB362
Cla019608CmoCh13G005900Cucurbita moschata (Rifu)cmowmB174
Cla019608Lsi02G008650Bottle gourd (USVL1VR-Ls)lsiwmB188
Cla019608Cp4.1LG09g07750Cucurbita pepo (Zucchini)cpewmB024
Cla019608Cp4.1LG20g05120Cucurbita pepo (Zucchini)cpewmB508
Cla019608CsGy1G021140Cucumber (Gy14) v2cgybwmB011
Cla019608MELO3C002715.2Melon (DHL92) v3.6.1medwmB144
Cla019608Carg14544Silver-seed gourdcarwmB0141
Cla019608CsaV3_1G032670Cucumber (Chinese Long) v3cucwmB014
Cla019608Bhi08G001722Wax gourdwgowmB472
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla019608Silver-seed gourdcarwmB0544
Cla019608Silver-seed gourdcarwmB0797
Cla019608Silver-seed gourdcarwmB0956
Cla019608Cucumber (Chinese Long) v3cucwmB506
Cla019608Watermelon (97103) v2wmwmbB113
Cla019608Watermelon (97103) v2wmwmbB121
Cla019608Watermelon (97103) v2wmwmbB124
Cla019608Wax gourdwgowmB367
Cla019608Wax gourdwgowmB421
Cla019608Watermelon (97103) v1wmwmB084
Cla019608Watermelon (97103) v1wmwmB093
Cla019608Cucumber (Gy14) v1cgywmB022
Cla019608Cucurbita maxima (Rimu)cmawmB186
Cla019608Cucurbita maxima (Rimu)cmawmB622
Cla019608Cucurbita maxima (Rimu)cmawmB819
Cla019608Cucurbita moschata (Rifu)cmowmB613
Cla019608Cucurbita moschata (Rifu)cmowmB809
Cla019608Melon (DHL92) v3.5.1mewmB562
Cla019608Watermelon (Charleston Gray)wcgwmB125
Cla019608Watermelon (Charleston Gray)wcgwmB223
Cla019608Cucumber (Chinese Long) v2cuwmB480
Cla019608Cucurbita pepo (Zucchini)cpewmB069
Cla019608Cucurbita pepo (Zucchini)cpewmB279
Cla019608Cucurbita pepo (Zucchini)cpewmB478
Cla019608Bottle gourd (USVL1VR-Ls)lsiwmB053
Cla019608Bottle gourd (USVL1VR-Ls)lsiwmB136
Cla019608Cucumber (Gy14) v2cgybwmB451
Cla019608Melon (DHL92) v3.6.1medwmB549