Cla019580 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla019580
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Protein TIFY 5A (AHRD V1 ***- TIF5A_ARATH); contains Interpro domain(s) IPR018467 CCT domain-like
Location	Chr3 : 7223231 .. 7223639 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCACTTCCTCAACTGCAACTTGGAACTTTGTCTCTCTCCGCCTTCTTCCTCTCCCTCCACCACCACCACTACCGTCACCGCCAACACCGGACTCCTCCTACCCGATCTTACCGAGCTCCAGGTACCCATTTCTCTCTTTATTTTCTCTTCCTCCCACTCCAATTAGTAATTAATTATTCATATGGTGTGTTGTGTTATTGTAGGCGAGGGCAATCATAGTACGAGCCACGAGACAAATGGAGGCGGAGAGAAGATCGACGATATGTCGGATCACTTCACCGGCCACCGCAGAACAAGTACCGATGAAGAGTGGAGCTAACAACCCTTCCATGAGGAGATCATTGCAGAGGTTTTTACAAAAGAGAAAGCATCGAACTCAAACACTTTCACCCTACACTCACTAA

mRNA sequence

ATGGAGCACTTCCTCAACTGCAACTTGGAACTTTGTCTCTCTCCGCCTTCTTCCTCTCCCTCCACCACCACCACTACCGTCACCGCCAACACCGGACTCCTCCTACCCGATCTTACCGAGCTCCAGGCGAGGGCAATCATAGTACGAGCCACGAGACAAATGGAGGCGGAGAGAAGATCGACGATATGTCGGATCACTTCACCGGCCACCGCAGAACAAGTACCGATGAAGAGTGGAGCTAACAACCCTTCCATGAGGAGATCATTGCAGAGGTTTTTACAAAAGAGAAAGCATCGAACTCAAACACTTTCACCCTACACTCACTAA

Coding sequence (CDS)

ATGGAGCACTTCCTCAACTGCAACTTGGAACTTTGTCTCTCTCCGCCTTCTTCCTCTCCCTCCACCACCACCACTACCGTCACCGCCAACACCGGACTCCTCCTACCCGATCTTACCGAGCTCCAGGCGAGGGCAATCATAGTACGAGCCACGAGACAAATGGAGGCGGAGAGAAGATCGACGATATGTCGGATCACTTCACCGGCCACCGCAGAACAAGTACCGATGAAGAGTGGAGCTAACAACCCTTCCATGAGGAGATCATTGCAGAGGTTTTTACAAAAGAGAAAGCATCGAACTCAAACACTTTCACCCTACACTCACTAA

Protein sequence

MEHFLNCNLELCLSPPSSSPSTTTTTVTANTGLLLPDLTELQARAIIVRATRQMEAERRSTICRITSPATAEQVPMKSGANNPSMRRSLQRFLQKRKHRTQTLSPYTH

Homology

[Close]

BLAST of Cla019580 vs. Swiss-Prot
Match: TIF5A_ARATH (Protein TIFY 5A OS=Arabidopsis thaliana GN=TIFY5A PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.4e-07
Identity = 48/128 (37.50%), Postives = 62/128 (48.44%), Query Frame = 1


Query: 6   NCNLELCLSPPS-SSPSTTTTTVTANTGLLLP---------------------DLTELQA 65
           NC+LEL L P S  S S+ TT+V  +T    P                     D+T LQA
Sbjct: 6   NCDLELRLFPTSYDSDSSDTTSVVESTSSGNPQPNEESQRITIFYNGKMCFSSDVTHLQA 65

Query: 66  RAIIVRATRQMEAERRSTICRITSPATA---EQVPMKSGANNP--SMRRSLQRFLQKRKH 107
           R+II  A+R+M+ +  S      + +T+    Q+P      NP  SM++SLQ FLQKRK 
Sbjct: 66  RSIISIASREMKTKSSSNGSDPPNKSTSFHHNQLP------NPKASMKKSLQSFLQKRKI 125

[Close]

BLAST of Cla019580 vs. TrEMBL
Match: A0A0A0LX13_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G435790 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 9.9e-27
Identity = 75/121 (61.98%), Postives = 87/121 (71.90%), Query Frame = 1


Query: 1   MEHFLNCNLELCLSPPSSSPSTTTTTVTANT------------GLLLPDLTELQARAIIV 60
           ME   N NLELCLSPPSSSPSTTT+T+   +            GL  PDLTE+QA+AIIV
Sbjct: 1   MEPLSNFNLELCLSPPSSSPSTTTSTLPLASNSTSQPNHITPIGLFTPDLTEIQAKAIIV 60

Query: 61  RATRQMEAER-RSTICRITSPATAEQVPMKSGANNPSMRRSLQRFLQKRKHRTQTLSPYT 109
           +ATRQMEAER R   CRI+S  +AE+V M +G  +PS+RRSLQRFLQKRK R QTLSPY 
Sbjct: 61  QATRQMEAERSRWRTCRISS--SAERVLMTNGEASPSLRRSLQRFLQKRKLRIQTLSPYA 119

[Close]

BLAST of Cla019580 vs. TrEMBL
Match: T1WNL1_TOBAC (Jasmonate ZIM-domain protein 12b OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.8e-13
Identity = 57/128 (44.53%), Postives = 71/128 (55.47%), Query Frame = 1


Query: 6   NCNLELCLSPPSSS--PSTTTT--------------------TVTANTGLLLPDLTELQA 65
           NCNLEL L PPS S  P   TT                    T+  N  L++ D TE QA
Sbjct: 4   NCNLELRLMPPSFSFSPKNCTTPYFSMDREEKESTEEKQQQLTIFYNGKLVVSDATEFQA 63

Query: 66  RAIIVRATRQMEAER--RSTICRITSPATAEQVP-MKSGANNPSMRRSLQRFLQKRKHRT 109
           +AII  A+R+ME +   RS+I   +SP +    P ++S A N SM+RSLQRFLQKRK+R 
Sbjct: 64  KAIIYLASREMEEKTKIRSSISESSSPISEPSSPFLQSPATNISMKRSLQRFLQKRKNRI 123

[Close]

BLAST of Cla019580 vs. TrEMBL
Match: I3WTA7_NICAT (Jasmonate ZIM domain protein j OS=Nicotiana attenuata PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.1e-12
Identity = 56/127 (44.09%), Postives = 72/127 (56.69%), Query Frame = 1


Query: 6   NCNLELCLSPPSSS--PSTTTT---------------------TVTANTGLLLPDLTELQ 65
           NCNLEL L PPS S  P + TT                     T+  N  L++ D TELQ
Sbjct: 4   NCNLELRLMPPSFSFSPKSCTTPYFSMNREDKENTEEKEPQQLTIFYNGKLVVSDATELQ 63

Query: 66  ARAIIVRATRQMEAER--RSTICRITSPATAEQVPM-KSGANNPSMRRSLQRFLQKRKHR 107
           A+AII  A+R+ME +   RS I   +SP +    P+ +S A++ SM+RSLQRFLQKRK+R
Sbjct: 64  AKAIIYLASREMEKKIKIRSPISESSSPISEPSSPLLQSPASDISMKRSLQRFLQKRKNR 123

[Close]

BLAST of Cla019580 vs. TrEMBL
Match: A0A0A0KI51_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G523460 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-11
Identity = 52/123 (42.28%), Postives = 65/123 (52.85%), Query Frame = 1


Query: 6   NCNLELCLSP--------------PSS----SPSTTTTTVTANTGLLLPDLTELQARAII 65
           NCNLEL LSP              PS+    SP +   T+  N  + + D+TELQARAI+
Sbjct: 13  NCNLELRLSPTPNPNPNPAAVSDQPSATADDSPQSQQLTIFYNGRICVCDVTELQARAIL 72

Query: 66  VRATRQMEAERRSTICRITSPATAEQVPMKSGANNP--SMRRSLQRFLQKRKHRTQTLSP 109
             ATR+ME    + +    SP   +  P       P  SM++SLQRFLQKRKHR Q  SP
Sbjct: 73  KLATREME---ENGLSETPSPMLQQSSPPPRTPTTPGLSMKKSLQRFLQKRKHRVQATSP 132

[Close]

BLAST of Cla019580 vs. TrEMBL
Match: T1WMW5_TOBAC (Jasmonate ZIM-domain protein 12a OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-10
Identity = 50/123 (40.65%), Postives = 64/123 (52.03%), Query Frame = 1


Query: 6   NCNLELCLSPP--SSSPSTTTTT------------------VTANTGLLLPDLTELQARA 65
           NCNLEL L PP  S SP   TTT                  +  N  +++ D TELQA+A
Sbjct: 4   NCNLELRLVPPCVSFSPKDCTTTPYFSMRNNQSTEEKQQLTIFYNGKVVVSDATELQAKA 63

Query: 66  IIVRATRQMEAERRSTICRITSPATAEQVPMKSGANNPSMRRSLQRFLQKRKHRTQTLSP 109
           II  A+R+ME   +++     SP +    P+       SM+RSLQ FLQKRK+R Q  SP
Sbjct: 64  IIYLASREMEENTKTS-----SPISEASSPLLQTQTGLSMKRSLQGFLQKRKNRIQATSP 121

[Close]

BLAST of Cla019580 vs. NCBI nr
Match: gi|659068433|ref|XP_008444384.1| (PREDICTED: protein TIFY 5A-like [Cucumis melo])

HSP 1 Score: 146.7 bits (369), Expect = 2.3e-32
Identity = 83/122 (68.03%), Postives = 91/122 (74.59%), Query Frame = 1


Query: 1   MEHFLNCNLELCLSPPSSSPSTTTTTVTANT--------------GLLLPDLTELQARAI 60
           MEHF N NLELCLSPPSSSPSTTTTT TA                G+  PDLTE+QA+AI
Sbjct: 1   MEHFPNFNLELCLSPPSSSPSTTTTTTTAAAASNSSSQHNHITPIGVPTPDLTEIQAKAI 60

Query: 61  IVRATRQMEAERRSTICRITSPATAEQVPMKSGANNPSMRRSLQRFLQKRKHRTQTLSPY 109
           IV ATRQMEAERR T CRI+S  +AE+V M+SG  +PSMRRSLQRFLQKRK R QTLSPY
Sbjct: 61  IVEATRQMEAERRWTTCRISS--SAERVWMRSGEASPSMRRSLQRFLQKRKLRIQTLSPY 120

[Close]

BLAST of Cla019580 vs. NCBI nr
Match: gi|449463899|ref|XP_004149668.1| (PREDICTED: protein TIFY 5A-like [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 1.4e-26
Identity = 75/121 (61.98%), Postives = 87/121 (71.90%), Query Frame = 1


Query: 1   MEHFLNCNLELCLSPPSSSPSTTTTTVTANT------------GLLLPDLTELQARAIIV 60
           ME   N NLELCLSPPSSSPSTTT+T+   +            GL  PDLTE+QA+AIIV
Sbjct: 1   MEPLSNFNLELCLSPPSSSPSTTTSTLPLASNSTSQPNHITPIGLFTPDLTEIQAKAIIV 60

Query: 61  RATRQMEAER-RSTICRITSPATAEQVPMKSGANNPSMRRSLQRFLQKRKHRTQTLSPYT 109
           +ATRQMEAER R   CRI+S  +AE+V M +G  +PS+RRSLQRFLQKRK R QTLSPY 
Sbjct: 61  QATRQMEAERSRWRTCRISS--SAERVLMTNGEASPSLRRSLQRFLQKRKLRIQTLSPYA 119

[Close]

BLAST of Cla019580 vs. NCBI nr
Match: gi|697137170|ref|XP_009622676.1| (PREDICTED: protein TIFY 5A-like [Nicotiana tomentosiformis])

HSP 1 Score: 82.8 bits (203), Expect = 4.0e-13
Identity = 57/128 (44.53%), Postives = 71/128 (55.47%), Query Frame = 1


Query: 6   NCNLELCLSPPSSS--PSTTTT--------------------TVTANTGLLLPDLTELQA 65
           NCNLEL L PPS S  P   TT                    T+  N  L++ D TE QA
Sbjct: 4   NCNLELRLMPPSFSFSPKNCTTPYFSMDREEKESTEEKQQQLTIFYNGKLVVSDATEFQA 63

Query: 66  RAIIVRATRQMEAER--RSTICRITSPATAEQVP-MKSGANNPSMRRSLQRFLQKRKHRT 109
           +AII  A+R+ME +   RS+I   +SP +    P ++S A N SM+RSLQRFLQKRK+R 
Sbjct: 64  KAIIYLASREMEEKTKIRSSISESSSPISEPSSPFLQSPATNISMKRSLQRFLQKRKNRI 123

[Close]

BLAST of Cla019580 vs. NCBI nr
Match: gi|698509598|ref|XP_009800006.1| (PREDICTED: protein TIFY 5A-like [Nicotiana sylvestris])

HSP 1 Score: 80.1 bits (196), Expect = 2.6e-12
Identity = 56/129 (43.41%), Postives = 71/129 (55.04%), Query Frame = 1


Query: 6   NCNLELCLSPPSSS--PSTTTT---------------------TVTANTGLLLPDLTELQ 65
           NCNLEL L PPS S  P   TT                     T+  N   ++ D TELQ
Sbjct: 4   NCNLELRLMPPSFSFSPKNCTTPYFSTDREDKESTEEKQPQQLTIFYNGKFVVSDATELQ 63

Query: 66  ARAIIVRATRQMEAER--RSTICRITSPATAEQVP-MKSGANNPSMRRSLQRFLQKRKHR 109
           A+AII  A+R+ME +   RS I   +SP +    P ++S A++ SM+RSLQRFLQKRK+R
Sbjct: 64  AKAIIYLASREMEEKTKIRSPISESSSPISEPSSPFLQSPASDLSMKRSLQRFLQKRKNR 123

[Close]

BLAST of Cla019580 vs. NCBI nr
Match: gi|389986113|gb|AFL46174.1| (jasmonate ZIM domain protein j [Nicotiana attenuata])

HSP 1 Score: 79.0 bits (193), Expect = 5.8e-12
Identity = 56/127 (44.09%), Postives = 72/127 (56.69%), Query Frame = 1


Query: 6   NCNLELCLSPPSSS--PSTTTT---------------------TVTANTGLLLPDLTELQ 65
           NCNLEL L PPS S  P + TT                     T+  N  L++ D TELQ
Sbjct: 4   NCNLELRLMPPSFSFSPKSCTTPYFSMNREDKENTEEKEPQQLTIFYNGKLVVSDATELQ 63

Query: 66  ARAIIVRATRQMEAER--RSTICRITSPATAEQVPM-KSGANNPSMRRSLQRFLQKRKHR 107
           A+AII  A+R+ME +   RS I   +SP +    P+ +S A++ SM+RSLQRFLQKRK+R
Sbjct: 64  AKAIIYLASREMEKKIKIRSPISESSSPISEPSSPLLQSPASDISMKRSLQRFLQKRKNR 123

The following BLAST results are available for this feature:

BLAST of Cla019580 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TIF5A_ARATH	7.4e-07	37.50	Protein TIFY 5A OS=Arabidopsis thaliana GN=TIFY5A PE=1 SV=1	[more]

BLAST of Cla019580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LX13_CUCSA	9.9e-27	61.98	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G435790 PE=4 SV=1	[more]
T1WNL1_TOBAC	2.8e-13	44.53	Jasmonate ZIM-domain protein 12b OS=Nicotiana tabacum PE=2 SV=1	[more]
I3WTA7_NICAT	4.1e-12	44.09	Jasmonate ZIM domain protein j OS=Nicotiana attenuata PE=2 SV=1	[more]
A0A0A0KI51_CUCSA	1.2e-11	42.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G523460 PE=4 SV=1	[more]
T1WMW5_TOBAC	1.7e-10	40.65	Jasmonate ZIM-domain protein 12a OS=Nicotiana tabacum PE=2 SV=1	[more]

BLAST of Cla019580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659068433\|ref\|XP_008444384.1\|	2.3e-32	68.03	PREDICTED: protein TIFY 5A-like [Cucumis melo]	[more]
gi\|449463899\|ref\|XP_004149668.1\|	1.4e-26	61.98	PREDICTED: protein TIFY 5A-like [Cucumis sativus]	[more]
gi\|697137170\|ref\|XP_009622676.1\|	4.0e-13	44.53	PREDICTED: protein TIFY 5A-like [Nicotiana tomentosiformis]	[more]
gi\|698509598\|ref\|XP_009800006.1\|	2.6e-12	43.41	PREDICTED: protein TIFY 5A-like [Nicotiana sylvestris]	[more]
gi\|389986113\|gb\|AFL46174.1\|	5.8e-12	44.09	jasmonate ZIM domain protein j [Nicotiana attenuata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018467	CCT_CS

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0050794	regulation of cellular process
biological_process	GO:0048583	regulation of response to stimulus
biological_process	GO:0006952	defense response
biological_process	GO:1903507	negative regulation of nucleic acid-templated transcription
biological_process	GO:0031347	regulation of defense response
biological_process	GO:2000022	regulation of jasmonic acid mediated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009611	response to wounding
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003714	transcription corepressor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla019580	Cla019580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018467	CO/COL/TOC1, conserved site	PFAM	PF09425	CCT_2	coord: 86..106 score: 3.
None	No IPR available	PANTHER	PTHR33077	FAMILY NOT NAMED	coord: 37..106 score: 7.6
None	No IPR available	PANTHER	PTHR33077:SF17	PROTEIN TIFY 5A-RELATED	coord: 37..106 score: 7.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla019580	Cla97C03G058060	Watermelon (97103) v2	wmwmbB124
Cla019580	Csa1G435790	Cucumber (Chinese Long) v2	cuwmB009
Cla019580	MELO3C002741	Melon (DHL92) v3.5.1	mewmB147
Cla019580	CSPI01G21100	Wild cucumber (PI 183967)	cpiwmB011
Cla019580	Cucsa.054580	Cucumber (Gy14) v1	cgywmB043
Cla019580	CmaCh13G005320	Cucurbita maxima (Rimu)	cmawmB186
Cla019580	CmoCh13G005600	Cucurbita moschata (Rifu)	cmowmB174
Cla019580	Cp4.1LG20g05250	Cucurbita pepo (Zucchini)	cpewmB508
Cla019580	CsGy1G020820	Cucumber (Gy14) v2	cgybwmB011
Cla019580	MELO3C002741.2	Melon (DHL92) v3.6.1	medwmB144
Cla019580	Carg19943	Silver-seed gourd	carwmB0797

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla019580	Wax gourd	wgowmB421
Cla019580	Wax gourd	wgowmB472
Cla019580	Watermelon (97103) v1	wmwmB084
Cla019580	Cucumber (Gy14) v1	cgywmB022
Cla019580	Cucurbita maxima (Rimu)	cmawmB370
Cla019580	Cucurbita maxima (Rimu)	cmawmB622
Cla019580	Cucurbita maxima (Rimu)	cmawmB819
Cla019580	Cucurbita moschata (Rifu)	cmowmB362
Cla019580	Cucurbita moschata (Rifu)	cmowmB613
Cla019580	Cucurbita moschata (Rifu)	cmowmB809
Cla019580	Melon (DHL92) v3.5.1	mewmB562
Cla019580	Watermelon (Charleston Gray)	wcgwmB125
Cla019580	Watermelon (Charleston Gray)	wcgwmB223
Cla019580	Cucumber (Chinese Long) v2	cuwmB480
Cla019580	Cucurbita pepo (Zucchini)	cpewmB024
Cla019580	Cucurbita pepo (Zucchini)	cpewmB069
Cla019580	Cucurbita pepo (Zucchini)	cpewmB478
Cla019580	Bottle gourd (USVL1VR-Ls)	lsiwmB136
Cla019580	Bottle gourd (USVL1VR-Ls)	lsiwmB188
Cla019580	Cucumber (Gy14) v2	cgybwmB451
Cla019580	Melon (DHL92) v3.6.1	medwmB549
Cla019580	Silver-seed gourd	carwmB0291
Cla019580	Silver-seed gourd	carwmB0419
Cla019580	Silver-seed gourd	carwmB0729
Cla019580	Cucumber (Chinese Long) v3	cucwmB014
Cla019580	Cucumber (Chinese Long) v3	cucwmB506
Cla019580	Watermelon (97103) v2	wmwmbB113