Cla019515 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla019515
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ty3-gypsy retrotransposon protein (AHRD V1 ***- E5GCP6_CUCME)
Location	Chr3 : 6196414 .. 6196692 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAGAAGGAACAAGGTTTCGTTGTCGTAGAGAACATCTGGAAGCGGTTGACAGAATCTCCTAAAGGCGGGTTTATCATCAAAGAAAATCCTTTTTTCGACAACTTTGCTCCTACTTCTGATCACTCCAAGAAAGAATCACATCCTAATGTTATGTCTGTCATGATTGCTAATGTAACAGCAGAGGCAACCATGACAGAGATGGAGAGAAGAATAGATCTCCTAATAAAAGCTGTCGAGGAGCGAGATCACGAGATCGCTGCCTTAAGAGAGTAG

mRNA sequence

ATGAAGGAGAAGGAACAAGGTTTCGTTGTCGTAGAGAACATCTGGAAGCGGTTGACAGAATCTCCTAAAGGCGGGTTTATCATCAAAGAAAATCCTTTTTTCGACAACTTTGCTCCTACTTCTGATCACTCCAAGAAAGAATCACATCCTAATGTTATGTCTGTCATGATTGCTAATGTAACAGCAGAGGCAACCATGACAGAGATGGAGAGAAGAATAGATCTCCTAATAAAAGCTGTCGAGGAGCGAGATCACGAGATCGCTGCCTTAAGAGAGTAG

Coding sequence (CDS)

ATGAAGGAGAAGGAACAAGGTTTCGTTGTCGTAGAGAACATCTGGAAGCGGTTGACAGAATCTCCTAAAGGCGGGTTTATCATCAAAGAAAATCCTTTTTTCGACAACTTTGCTCCTACTTCTGATCACTCCAAGAAAGAATCACATCCTAATGTTATGTCTGTCATGATTGCTAATGTAACAGCAGAGGCAACCATGACAGAGATGGAGAGAAGAATAGATCTCCTAATAAAAGCTGTCGAGGAGCGAGATCACGAGATCGCTGCCTTAAGAGAGTAG

Protein sequence

MKEKEQGFVVVENIWKRLTESPKGGFIIKENPFFDNFAPTSDHSKKESHPNVMSVMIANVTAEATMTEMERRIDLLIKAVEERDHEIAALRE

Homology

[Close]

BLAST of Cla019515 vs. TrEMBL
Match: E5GB67_CUCME (Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.3e-22
Identity = 55/92 (59.78%), Postives = 74/92 (80.43%), Query Frame = 1


Query: 1  MKEKEQGFVVVENIWKRLTESPKGGFIIKENPFFDNFAPTSDHSKKESHPNVMSVMIANV 60
          M+E+EQGFV+ +   ++L ES KGG II++NP F+N  PTS+ S KESH  V+SVM+ +V
Sbjct: 1  MQEQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNLSDKESHLEVVSVMMIDV 60

Query: 61 TAEATMTEMERRIDLLIKAVEERDHEIAALRE 93
          TAEATM EME++I+ L+K VEERDHEIAAL++
Sbjct: 61 TAEATMAEMEKKINFLMKVVEERDHEIAALKD 92

[Close]

BLAST of Cla019515 vs. TrEMBL
Match: E5GCP6_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-21
Identity = 53/91 (58.24%), Postives = 73/91 (80.22%), Query Frame = 1


Query: 2   KEKEQGFVVVENIWKRLTESPKGGFIIKENPFFDNFAPTSDHSKKESHPNVMSVMIANVT 61
           +E+EQGFV+ +   ++L ESPKGG II++NP F+N  P S+ S K SH  V+SVM+ +VT
Sbjct: 33  QEQEQGFVLKKKSLEQLIESPKGGIIIRDNPLFNNSTPASNLSDKASHLEVVSVMMVDVT 92

Query: 62  AEATMTEMERRIDLLIKAVEERDHEIAALRE 93
           AEAT+TEMER+I+ L+K +EERDHEIAAL++
Sbjct: 93  AEATVTEMERKINFLMKVIEERDHEIAALKD 123

[Close]

BLAST of Cla019515 vs. TrEMBL
Match: E5GCE3_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.5e-20
Identity = 51/92 (55.43%), Postives = 70/92 (76.09%), Query Frame = 1


Query: 1   MKEKEQGFVVVENIWKRLTESPKGGFIIKENPFFDNFAPTSDHSKKESHPNVMSVMIANV 60
           ++E+EQ  V+ +  W++L ESPKGG  I+ENP F+N  P S+ S KESH  V+SV++A V
Sbjct: 30  IQEQEQSSVLKKKSWEQLIESPKGGINIRENPLFNNSTPASNLSDKESHLEVVSVIMAAV 89

Query: 61  TAEATMTEMERRIDLLIKAVEERDHEIAALRE 93
           TAE TM EMER+I+ L+KAV++RDHEI AL +
Sbjct: 90  TAETTMVEMERKINFLMKAVKDRDHEITALED 121

[Close]

BLAST of Cla019515 vs. TrEMBL
Match: E5GCM2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.6e-17
Identity = 46/89 (51.69%), Postives = 65/89 (73.03%), Query Frame = 1


Query: 2   KEKEQGFVVVENIWKRLTESPKGGFIIKENPFFDNFAPTSDHSKKESHPNVMSVMIANVT 61
           +++EQ  V+ +  W++L ESPK G IIKENP F++  P S+ S+KESH  V+S+M+A+VT
Sbjct: 31  QKQEQNSVLAKKSWEQLMESPKCGIIIKENPLFEDSTPASNLSEKESHLEVVSIMMADVT 90

Query: 62  AEATMTEMERRIDLLIKAVEERDHEIAAL 91
            EA M EME +I+ L+K VEERD+ I  L
Sbjct: 91  VEAVMVEMEMKINFLMKVVEERDYGITVL 119

[Close]

BLAST of Cla019515 vs. TrEMBL
Match: E5GBB0_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.9e-16
Identity = 44/86 (51.16%), Postives = 67/86 (77.91%), Query Frame = 1


Query: 8   FVVVENIWKRLTESPKGGFIIKENPFFDNFAPTSDHSKKES-HPNVMSVMIANV-TAEAT 67
           F V +NIW+++++ PKGG IIKENP  D     S+HS +E+  PN+MSVM+ +V T+EA 
Sbjct: 36  FEVAKNIWEQISKPPKGGIIIKENPAIDKHNSLSEHSNEEAPQPNIMSVMVTDVDTSEAR 95

Query: 68  MTEMERRIDLLIKAVEERDHEIAALR 92
           M E+E+++++L+KAVEERD +IA+L+
Sbjct: 96  MVELEKKVNMLMKAVEERDFKIASLK 121

[Close]

BLAST of Cla019515 vs. NCBI nr
Match: gi|307135838|gb|ADN33709.1| (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 111.3 bits (277), Expect = 9.0e-22
Identity = 55/92 (59.78%), Postives = 74/92 (80.43%), Query Frame = 1


Query: 1  MKEKEQGFVVVENIWKRLTESPKGGFIIKENPFFDNFAPTSDHSKKESHPNVMSVMIANV 60
          M+E+EQGFV+ +   ++L ES KGG II++NP F+N  PTS+ S KESH  V+SVM+ +V
Sbjct: 1  MQEQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNLSDKESHLEVVSVMMIDV 60

Query: 61 TAEATMTEMERRIDLLIKAVEERDHEIAALRE 93
          TAEATM EME++I+ L+K VEERDHEIAAL++
Sbjct: 61 TAEATMAEMEKKINFLMKVVEERDHEIAALKD 92

[Close]

BLAST of Cla019515 vs. NCBI nr
Match: gi|307136441|gb|ADN34247.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 110.5 bits (275), Expect = 1.5e-21
Identity = 53/91 (58.24%), Postives = 73/91 (80.22%), Query Frame = 1


Query: 2   KEKEQGFVVVENIWKRLTESPKGGFIIKENPFFDNFAPTSDHSKKESHPNVMSVMIANVT 61
           +E+EQGFV+ +   ++L ESPKGG II++NP F+N  P S+ S K SH  V+SVM+ +VT
Sbjct: 33  QEQEQGFVLKKKSLEQLIESPKGGIIIRDNPLFNNSTPASNLSDKASHLEVVSVMMVDVT 92

Query: 62  AEATMTEMERRIDLLIKAVEERDHEIAALRE 93
           AEAT+TEMER+I+ L+K +EERDHEIAAL++
Sbjct: 93  AEATVTEMERKINFLMKVIEERDHEIAALKD 123

[Close]

BLAST of Cla019515 vs. NCBI nr
Match: gi|307136319|gb|ADN34142.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 105.1 bits (261), Expect = 6.5e-20
Identity = 51/92 (55.43%), Postives = 70/92 (76.09%), Query Frame = 1


Query: 1   MKEKEQGFVVVENIWKRLTESPKGGFIIKENPFFDNFAPTSDHSKKESHPNVMSVMIANV 60
           ++E+EQ  V+ +  W++L ESPKGG  I+ENP F+N  P S+ S KESH  V+SV++A V
Sbjct: 30  IQEQEQSSVLKKKSWEQLIESPKGGINIRENPLFNNSTPASNLSDKESHLEVVSVIMAAV 89

Query: 61  TAEATMTEMERRIDLLIKAVEERDHEIAALRE 93
           TAE TM EMER+I+ L+KAV++RDHEI AL +
Sbjct: 90  TAETTMVEMERKINFLMKAVKDRDHEITALED 121

[Close]

BLAST of Cla019515 vs. NCBI nr
Match: gi|659118742|ref|XP_008459280.1| (PREDICTED: uncharacterized protein LOC103498458 [Cucumis melo])

HSP 1 Score: 99.8 bits (247), Expect = 2.7e-18
Identity = 47/82 (57.32%), Postives = 64/82 (78.05%), Query Frame = 1


Query: 11 VENIWKRLTESPKGGFIIKENPFFDNFAPTSDHSKKESHPNVMSVMIANVTAEATMTEME 70
          +++I K+L  SPK G  IKENP +DNF       KKE+HP+VMSVM+ ++TAEA MTEME
Sbjct: 1  MQSILKQLMLSPKAGIFIKENPLYDNFDSALSKLKKEAHPDVMSVMMVDITAEAAMTEME 60

Query: 71 RRIDLLIKAVEERDHEIAALRE 93
          R+I+L++K V+E+DH+I ALRE
Sbjct: 61 RKINLVMKVVKEQDHKITALRE 82

[Close]

BLAST of Cla019515 vs. NCBI nr
Match: gi|307136413|gb|ADN34221.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 95.5 bits (236), Expect = 5.1e-17
Identity = 46/89 (51.69%), Postives = 65/89 (73.03%), Query Frame = 1


Query: 2   KEKEQGFVVVENIWKRLTESPKGGFIIKENPFFDNFAPTSDHSKKESHPNVMSVMIANVT 61
           +++EQ  V+ +  W++L ESPK G IIKENP F++  P S+ S+KESH  V+S+M+A+VT
Sbjct: 31  QKQEQNSVLAKKSWEQLMESPKCGIIIKENPLFEDSTPASNLSEKESHLEVVSIMMADVT 90

Query: 62  AEATMTEMERRIDLLIKAVEERDHEIAAL 91
            EA M EME +I+ L+K VEERD+ I  L
Sbjct: 91  VEAVMVEMEMKINFLMKVVEERDYGITVL 119

The following BLAST results are available for this feature:

BLAST of Cla019515 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GB67_CUCME	6.3e-22	59.78	Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCP6_CUCME	1.1e-21	58.24	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCE3_CUCME	4.5e-20	55.43	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCM2_CUCME	3.6e-17	51.69	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GBB0_CUCME	3.9e-16	51.16	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of Cla019515 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307135838\|gb\|ADN33709.1\|	9.0e-22	59.78	retrotransposon gag protein [Cucumis melo subsp. melo]	[more]
gi\|307136441\|gb\|ADN34247.1\|	1.5e-21	58.24	ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|307136319\|gb\|ADN34142.1\|	6.5e-20	55.43	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|659118742\|ref\|XP_008459280.1\|	2.7e-18	57.32	PREDICTED: uncharacterized protein LOC103498458 [Cucumis melo]	[more]
gi\|307136413\|gb\|ADN34221.1\|	5.1e-17	51.69	hypothetical protein [Cucumis melo subsp. melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla019515	Cla019515.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla019515	Watermelon (97103) v2	wmwmbB124
Cla019515	Wax gourd	wgowmB480
Cla019515	Cucumber (Gy14) v1	cgywmB314
Cla019515	Cucumber (Gy14) v1	cgywmB315
Cla019515	Cucurbita maxima (Rimu)	cmawmB186
Cla019515	Cucurbita maxima (Rimu)	cmawmB622
Cla019515	Cucurbita maxima (Rimu)	cmawmB819
Cla019515	Cucurbita moschata (Rifu)	cmowmB174
Cla019515	Cucurbita moschata (Rifu)	cmowmB809
Cla019515	Melon (DHL92) v3.5.1	mewmB147
Cla019515	Watermelon (Charleston Gray)	wcgwmB223
Cla019515	Cucumber (Chinese Long) v2	cuwmB015
Cla019515	Cucumber (Chinese Long) v2	cuwmB025
Cla019515	Cucurbita pepo (Zucchini)	cpewmB069
Cla019515	Cucurbita pepo (Zucchini)	cpewmB478
Cla019515	Cucurbita pepo (Zucchini)	cpewmB508
Cla019515	Bottle gourd (USVL1VR-Ls)	lsiwmB188
Cla019515	Cucumber (Gy14) v2	cgybwmB017
Cla019515	Cucumber (Gy14) v2	cgybwmB027
Cla019515	Melon (DHL92) v3.6.1	medwmB144
Cla019515	Silver-seed gourd	carwmB0291
Cla019515	Silver-seed gourd	carwmB0394
Cla019515	Cucumber (Chinese Long) v3	cucwmB020
Cla019515	Cucumber (Chinese Long) v3	cucwmB030