Cla018961 (gene) Watermelon (97103) v1

Overview
NameCla018961
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr6 : 23868548 .. 23868967 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGAGATTAGTCTTAACTCCATTGTAGTCGCAATGGCTTCCATTCCTGAGCCTCTGAAGCAATCCAACGGTGACATCGGTTCTGATGAACCGGGTGGGGTGCGCGCCGCCTCTGGACCAGTCGACCCAAGTGAGGGTCCGGTTGGAGTTGTTCTTGGAGAATTTGATTCCGACGAAGGTGGGGAGGTAGTGCTCGTCCATGTAACAAGAGGGCTTACAGAATTTCTGGAAGACGGGGAAGAATTTCTGGTCGGAGACGACTTGGGAGGCGATGGTTCGGTCCATTTCGAACCATTGGGAGCCCTTGCGCCATTGATGGAGGTTGATTGTGGGGCGCATTTTTGGGCTGTAACGGCCGCGGCCCACTGGGCCTGGAAGGTCGTAGGCCTCAATGAAAGTGGATTTGGAGCCCATTAA

mRNA sequence

ATGACAGAGATTAGTCTTAACTCCATTGTAGTCGCAATGGCTTCCATTCCTGAGCCTCTGAAGCAATCCAACGGTGACATCGGTTCTGATGAACCGGGTGGGGTGCGCGCCGCCTCTGGACCAGTCGACCCAAGTGAGGGTCCGGTTGGAGTTGTTCTTGGAGAATTTGATTCCGACGAAGGTGGGGAGGTAGTGCTCGTCCATGTAACAAGAGGGCTTACAGAATTTCTGGAAGACGGGGAAGAATTTCTGGTCGGAGACGACTTGGGAGGCGATGGTTCGGTCCATTTCGAACCATTGGGAGCCCTTGCGCCATTGATGGAGGTTGATTGTGGGGCGCATTTTTGGGCTGTAACGGCCGCGGCCCACTGGGCCTGGAAGGTCGTAGGCCTCAATGAAAGTGGATTTGGAGCCCATTAA

Coding sequence (CDS)

ATGACAGAGATTAGTCTTAACTCCATTGTAGTCGCAATGGCTTCCATTCCTGAGCCTCTGAAGCAATCCAACGGTGACATCGGTTCTGATGAACCGGGTGGGGTGCGCGCCGCCTCTGGACCAGTCGACCCAAGTGAGGGTCCGGTTGGAGTTGTTCTTGGAGAATTTGATTCCGACGAAGGTGGGGAGGTAGTGCTCGTCCATGTAACAAGAGGGCTTACAGAATTTCTGGAAGACGGGGAAGAATTTCTGGTCGGAGACGACTTGGGAGGCGATGGTTCGGTCCATTTCGAACCATTGGGAGCCCTTGCGCCATTGATGGAGGTTGATTGTGGGGCGCATTTTTGGGCTGTAACGGCCGCGGCCCACTGGGCCTGGAAGGTCGTAGGCCTCAATGAAAGTGGATTTGGAGCCCATTAA

Protein sequence

MTEISLNSIVVAMASIPEPLKQSNGDIGSDEPGGVRAASGPVDPSEGPVGVVLGEFDSDEGGEVVLVHVTRGLTEFLEDGEEFLVGDDLGGDGSVHFEPLGALAPLMEVDCGAHFWAVTAAAHWAWKVVGLNESGFGAH
Homology
[Close]
BLAST of Cla018961 vs. TrEMBL
Match: A0A0A0LSQ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G024225 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.0e-52
Identity = 101/136 (74.26%), Postives = 115/136 (84.56%), Query Frame = 1 

Query: 1   MTEISLNSIVVAMASIPEPLKQSNGDIGSDEPGGVRAASGPVDPSEGPVGVVLGEFDSDE 60
           MTEIS NSI++A+A+IP+PLKQ  GDIGS+EPG V AASGP+DPS+GPVGV L E DS++
Sbjct: 1   MTEISFNSIILAVATIPQPLKQFKGDIGSNEPGRVSAASGPIDPSQGPVGVGLRESDSNK 60

Query: 61  GGEVVLVHVTRGLTEFLEDGEEFLVGDDLGGDGSVHFEPLGALAPLMEVDCGAHFWAVTA 120
           GGEVVLVHV R   +FLEDGE  LVGDDLGGDGSVHFEPLG LAPLME+D   HFW V A
Sbjct: 61  GGEVVLVHVARRFAKFLEDGEILLVGDDLGGDGSVHFEPLGTLAPLMELDYWPHFWVVAA 120

Query: 121 AAHWAWKVVGLNESGF 137
           +AHWAWKV+GLNE GF
Sbjct: 121 SAHWAWKVIGLNECGF 136

[Close]
BLAST of Cla018961 vs. NCBI nr
Match: gi|700208741|gb|KGN63837.1| (hypothetical protein Csa_1G024225 [Cucumis sativus])

HSP 1 Score: 212.6 bits (540), Expect = 4.3e-52
Identity = 101/136 (74.26%), Postives = 115/136 (84.56%), Query Frame = 1 

Query: 1   MTEISLNSIVVAMASIPEPLKQSNGDIGSDEPGGVRAASGPVDPSEGPVGVVLGEFDSDE 60
           MTEIS NSI++A+A+IP+PLKQ  GDIGS+EPG V AASGP+DPS+GPVGV L E DS++
Sbjct: 1   MTEISFNSIILAVATIPQPLKQFKGDIGSNEPGRVSAASGPIDPSQGPVGVGLRESDSNK 60

Query: 61  GGEVVLVHVTRGLTEFLEDGEEFLVGDDLGGDGSVHFEPLGALAPLMEVDCGAHFWAVTA 120
           GGEVVLVHV R   +FLEDGE  LVGDDLGGDGSVHFEPLG LAPLME+D   HFW V A
Sbjct: 61  GGEVVLVHVARRFAKFLEDGEILLVGDDLGGDGSVHFEPLGTLAPLMELDYWPHFWVVAA 120

Query: 121 AAHWAWKVVGLNESGF 137
           +AHWAWKV+GLNE GF
Sbjct: 121 SAHWAWKVIGLNECGF 136

The following BLAST results are available for this feature:
BLAST of Cla018961 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSQ5_CUCSA3.0e-5274.26Uncharacterized protein OS=Cucumis sativus GN=Csa_1G024225 PE=4 SV=1[more]
BLAST of Cla018961 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208741|gb|KGN63837.1|4.3e-5274.26hypothetical protein Csa_1G024225 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla018961Cla018961.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla018961ClCG06G014660Watermelon (Charleston Gray)wcgwmB344
Cla018961CmoCh10G003280Cucurbita moschata (Rifu)cmowmB063
Cla018961Lsi06G013190Bottle gourd (USVL1VR-Ls)lsiwmB414
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla018961Watermelon (97103) v2wmwmbB397
Cla018961Watermelon (97103) v2wmwmbB400
Cla018961Watermelon (97103) v2wmwmbB406
Cla018961Wax gourdwgowmB235
Cla018961Wax gourdwgowmB527
Cla018961Wax gourdwgowmB574
Cla018961Watermelon (97103) v1wmwmB136
Cla018961Watermelon (97103) v1wmwmB156
Cla018961Cucumber (Gy14) v1cgywmB167
Cla018961Cucumber (Gy14) v1cgywmB194
Cla018961Cucumber (Gy14) v1cgywmB530
Cla018961Cucurbita maxima (Rimu)cmawmB071
Cla018961Cucurbita maxima (Rimu)cmawmB143
Cla018961Cucurbita maxima (Rimu)cmawmB214
Cla018961Cucurbita maxima (Rimu)cmawmB402
Cla018961Cucurbita maxima (Rimu)cmawmB404
Cla018961Cucurbita maxima (Rimu)cmawmB746
Cla018961Cucurbita moschata (Rifu)cmowmB128
Cla018961Cucurbita moschata (Rifu)cmowmB202
Cla018961Cucurbita moschata (Rifu)cmowmB396
Cla018961Cucurbita moschata (Rifu)cmowmB740
Cla018961Melon (DHL92) v3.5.1mewmB081
Cla018961Melon (DHL92) v3.5.1mewmB180
Cla018961Melon (DHL92) v3.5.1mewmB289
Cla018961Watermelon (Charleston Gray)wcgwmB267
Cla018961Watermelon (Charleston Gray)wcgwmB308
Cla018961Cucumber (Chinese Long) v2cuwmB095
Cla018961Cucumber (Chinese Long) v2cuwmB096
Cla018961Cucumber (Chinese Long) v2cuwmB441
Cla018961Cucurbita pepo (Zucchini)cpewmB058
Cla018961Cucurbita pepo (Zucchini)cpewmB059
Cla018961Cucurbita pepo (Zucchini)cpewmB372
Cla018961Cucurbita pepo (Zucchini)cpewmB470
Cla018961Cucurbita pepo (Zucchini)cpewmB529
Cla018961Cucurbita pepo (Zucchini)cpewmB679
Cla018961Bottle gourd (USVL1VR-Ls)lsiwmB223
Cla018961Bottle gourd (USVL1VR-Ls)lsiwmB341
Cla018961Cucumber (Gy14) v2cgybwmB095
Cla018961Cucumber (Gy14) v2cgybwmB096
Cla018961Cucumber (Gy14) v2cgybwmB412
Cla018961Melon (DHL92) v3.6.1medwmB079
Cla018961Melon (DHL92) v3.6.1medwmB177
Cla018961Melon (DHL92) v3.6.1medwmB283
Cla018961Silver-seed gourdcarwmB0391
Cla018961Silver-seed gourdcarwmB0511
Cla018961Silver-seed gourdcarwmB0594
Cla018961Silver-seed gourdcarwmB0789
Cla018961Silver-seed gourdcarwmB0846
Cla018961Silver-seed gourdcarwmB1052
Cla018961Cucumber (Chinese Long) v3cucwmB106
Cla018961Cucumber (Chinese Long) v3cucwmB107
Cla018961Cucumber (Chinese Long) v3cucwmB466