Cla018857 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla018857
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	tRNA-specific adenosine deaminase (AHRD V1 ***- B6T9V4_MAIZE)
Location	Chr6 : 22890528 .. 22892813 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCTATTGATATCCTGATTGAGGCATGGCAGAGGGATGGACTTTCTACCTCAGAAGTGGCTGATAAGTTCTCGAGGTGCAAACTTTATGTTACCTGTGAACCATGCATTATGTGTGCTTCTGCCCTATCAATAGTCGGTATGTTTTCTTTGCCCTTTTGTTATTTTTTTCTCATTTCTCAATCCAAAGGTAACTGTTTGCCCAAAGGGTCACAGCTCATAGGTCATATTTACCTTCCACTTCATTTCGCTGAACATGGTTCATTCATTGCTATTGGAACTCCTGTTTTAGGTATAAAGGAAGTATATTATGGTTGTGCAAATGATAAATTTGGTGGATGTGGATCTATATTGTCACTTCACTTAGGTAGCCGGGAGTCACCTACAAGGTTTATTTCTTTATCTACCATTATCAGATTTTAGTTTTGTGGGTGAGGAACTCTTTGGCCTTCTCTTCTTGAAAGCATTGCGGCAGTTAGCTGTTCAACTTTCGAAAGCTTAGCATATTTTTATGTAATTTAAGTCTTTTATGTGCTTACATGCTATCAGTTCATATACTTCCTTTTGACTGGATTTTCTTCAACGAAATGGTTTCAATACACCTGCCATGGGAAAATTCATTAACTAGTTGATTTATGCCTTCATTATTTGATGTAATTATATTGTCATTGTTTTGATAGGAATAGGATTTTTTCCTTTTAAGTTTTAGCCTTTAAGGTCTTCACATGGACCATTGTATTATTGTAAAGTAAGAAAGAGATGAATAAAATCAATAATATTACAAATTACCAGGATACCCTTTTCATTTTTCATTCGCACTTCCTTTTTGGAAAAGAAAACTTAGGTCAATAAACAAAATTAAATTGAGAGTGTTACATTGGGGCAAGCTCTCCTAGATATGTATCACTTTGGCTTTATCAGCAAGAACTCTCTATCACAACAGTTGTCACATCATGAGTTAGATATCATTGACTAGGCTGATAAACTACTCCTAAAAGTTAGAAGGACCTAAATAACTGAAATAATGACTGACACTACAATTATTACTTGAAAATCAATTCAGTGTGTGAAAGAAAGGTTGAACGCTGGAGAAGGAGTGTCTCCTGTGAGCAAGCAAGCTTTGCTCTCCATGCTTGTGTGTCCAAATTTTGCTTGTGCCCGTCTCCTGTGTAAAAAATTGAAAATGAAAGTTCATACTTCATATTGTTCTGGAGCAAGCTTGCGGAAAACCTGAGAGGGGCAAGCAACACTTCAATCTGTTTGCTTCCGAAGGAAACTTGCAAAAAGGCTGAGTAATTTCCTTTTAATATATGAAAAAACTTGACTTTCATTAAAACAAAATGAAAGAATGCATGGGCAAACACAAAAGGAAATACAAAAAGGCTAAGTAATCCATTTACTAATTGAATCTCTATATCTAACATAGCCTACCACTCAGATATCACTTATTCCTCGAGATAATGAATATAAAGTAGCATTGTTTGGTGGAGGCTTCCCAACTTTGATTGAACCAACCACAGAGGAAGCAACTTTTGCCCTTTAAAATTTGTTCAACTGGGCCAAGCAGTGTAAATGGCCAAGCAGTGTAAATAATTATAAGTTACGGCCATAGAATTCAATATCTCAGCAGTGATCATGTCATCTTTCATTTCAGGCTTGGAGTTCTATTATGTATAGGTTAAGTAACAAGAGAACCTAAATTCATCCAGCATTTTACTTTTTGCACTATCATCCTTCACATGAAGAAAAGGTTAGTTCATTTGTTCTGAAGGCTATAAAGTAATTTAAACGATATAAACTAAACTAGGTAAGAGTTTAGATTTTTGGGAGGGCTGATAATTTGAACGTGTGAAGGAAGTCCTTTCACATTTTGTCTAGTCTTTACTTTTAAACTTCTGTATTGCTTTCTTTGTTATTGCCTGAAATCTCTTTAATTTGGTATGATAGTGGTAATGGGCAAGGAAGGGGGTTCAAATGTACTGCAGGAATAATGGCATCAGAAGCAGTTGCTCTTTTTCGAAGTTTTTATGAACAGGGGAATCCCAATGGTATGTGAAAATATTTCATAATCAGATCTGCATGATTTTCTCTTTGTATTGCATATTGCATATCCCAAATAGACCCGTTTATTTTGCTGGTATAATTTATTTGTCAGATTCTCTTTTGGATCAAGTGACTATGAAAAAATGTATCGCATCTTAGAGGTTTCATTGATAGTGGAGGTGTTCTGTTGCAGCTCCAAAACCACACAGGCCCCTCGTTAACCATCAGGTGGACCAATGA

mRNA sequence

ATGGAAGCTATTGATATCCTGATTGAGGCATGGCAGAGGGATGGACTTTCTACCTCAGAAGTGGCTGATAAGTTCTCGAGTGGTAATGGGCAAGGAAGGGGGTTCAAATGTACTGCAGGAATAATGGCATCAGAAGCAGTTGCTCTTTTTCGAAGTTTTTATGAACAGGGGAATCCCAATGCTCCAAAACCACACAGGCCCCTCGTTAACCATCAGGTGGACCAATGA

Coding sequence (CDS)

ATGGAAGCTATTGATATCCTGATTGAGGCATGGCAGAGGGATGGACTTTCTACCTCAGAAGTGGCTGATAAGTTCTCGAGTGGTAATGGGCAAGGAAGGGGGTTCAAATGTACTGCAGGAATAATGGCATCAGAAGCAGTTGCTCTTTTTCGAAGTTTTTATGAACAGGGGAATCCCAATGCTCCAAAACCACACAGGCCCCTCGTTAACCATCAGGTGGACCAATGA

Protein sequence

MEAIDILIEAWQRDGLSTSEVADKFSSGNGQGRGFKCTAGIMASEAVALFRSFYEQGNPNAPKPHRPLVNHQVDQ

Homology

[Close]

BLAST of Cla018857 vs. TrEMBL
Match: A0A0A0LZX4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G425900 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.4e-18
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 1


Query: 26  SSGNGQGRGFKCTAGIMASEAVALFRSFYEQGNPNAPKPHRPLVNHQVDQ 76
           +SGNG GRGFKCTAGIMASEAV LFRSFYEQGNPNAPKPHRPLVNHQ  Q
Sbjct: 142 TSGNGLGRGFKCTAGIMASEAVGLFRSFYEQGNPNAPKPHRPLVNHQAGQ 191

[Close]

BLAST of Cla018857 vs. TrEMBL
Match: A0A0A0LZX4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G425900 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 7.4e-05
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1


Query: 1  MEAIDILIEAWQRDGLSTSEVADKFS 27
          MEAIDILIEAWQRDGLSTSEVADKFS
Sbjct: 64 MEAIDILIEAWQRDGLSTSEVADKFS 89

HSP 2 Score: 82.8 bits (203), Expect = 1.9e-13
Identity = 49/117 (41.88%), Postives = 58/117 (49.57%), Query Frame = 1


Query: 1   MEAIDILIEAWQRDGLSTSEVADKFSS--------------------------------- 60
           MEAID+L+E WQ++GLS +EVA KFS+                                 
Sbjct: 58  MEAIDVLLEQWQKNGLSMTEVAKKFSNCSLYVTCEPCIMCASALSNLGIKEVFYGCSNDK 117

Query: 61  --GNGQ------------GRGFKCTAGIMASEAVALFRSFYEQGNPNAPKPHRPLVN 71
             G G              +GFKC  GIMA EAV L R+FYEQGNPNAPKPHRPL +
Sbjct: 118 FGGCGSILSLHLSDAVSPNKGFKCAGGIMAEEAVLLLRTFYEQGNPNAPKPHRPLAH 174

[Close]

BLAST of Cla018857 vs. TrEMBL
Match: A0A0D2V5A2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G114300 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.3e-13
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 1


Query: 19  SEVADKFSSGNGQGRGFKCTAGIMASEAVALFRSFYEQGNPNAPKPHRPLVNHQVD 75
           S  ++ F S     RGFKCT G+MASEA++LFRSFYEQGNPNAPKPHRPLV  +V+
Sbjct: 72  SSCSEPFISDKVPQRGFKCTGGLMASEAISLFRSFYEQGNPNAPKPHRPLVQKKVE 127

[Close]

BLAST of Cla018857 vs. TrEMBL
Match: A0A0D2V5A2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G114300 PE=4 SV=1)

HSP 1 Score: 40.8 bits (94), Expect = 8.5e-01
Identity = 19/26 (73.08%), Postives = 21/26 (80.77%), Query Frame = 1


Query: 1  MEAIDILIEAWQRDGLSTSEVADKFS 27
          MEAID L+E WQRDGLS +EVA  FS
Sbjct: 1  MEAIDNLLEMWQRDGLSKAEVAKNFS 26

HSP 2 Score: 81.6 bits (200), Expect = 4.3e-13
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 1


Query: 19  SEVADKFSSGNGQGRGFKCTAGIMASEAVALFRSFYEQGNPNAPKPHRPLVNHQVD 75
           S  ++ F S     RGFKCT G+MASEA++LFRSFYEQGNPNAPKPHRPLV  +V+
Sbjct: 128 SSCSEPFISDKVPQRGFKCTGGLMASEAISLFRSFYEQGNPNAPKPHRPLVQKKVE 183

[Close]

BLAST of Cla018857 vs. TrEMBL
Match: A0A0D2V4B3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G114300 PE=4 SV=1)

HSP 1 Score: 40.8 bits (94), Expect = 8.5e-01
Identity = 19/26 (73.08%), Postives = 21/26 (80.77%), Query Frame = 1


Query: 1  MEAIDILIEAWQRDGLSTSEVADKFS 27
          MEAID L+E WQRDGLS +EVA  FS
Sbjct: 57 MEAIDNLLEMWQRDGLSKAEVAKNFS 82

HSP 2 Score: 80.9 bits (198), Expect = 7.4e-13
Identity = 38/53 (71.70%), Postives = 40/53 (75.47%), Query Frame = 1


Query: 16  LSTSEVADKFSSGNGQGRGFKCTAGIMASEAVALFRSFYEQGNPNAPKPHRPL 69
           L TSE          QGRGFKCT GIMA EA++LFRSFYEQGNPNAPKPHRPL
Sbjct: 133 LHTSESGGSTRDEVSQGRGFKCTGGIMAPEAISLFRSFYEQGNPNAPKPHRPL 185

[Close]

BLAST of Cla018857 vs. NCBI nr
Match: gi|449457197|ref|XP_004146335.1| (PREDICTED: tRNA-specific adenosine deaminase 2 isoform X2 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 4.9e-18
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 1


Query: 26  SSGNGQGRGFKCTAGIMASEAVALFRSFYEQGNPNAPKPHRPLVNHQVDQ 76
           +SGNG GRGFKCTAGIMASEAV LFRSFYEQGNPNAPKPHRPLVNHQ  Q
Sbjct: 142 TSGNGLGRGFKCTAGIMASEAVGLFRSFYEQGNPNAPKPHRPLVNHQAGQ 191

[Close]

BLAST of Cla018857 vs. NCBI nr
Match: gi|449457197|ref|XP_004146335.1| (PREDICTED: tRNA-specific adenosine deaminase 2 isoform X2 [Cucumis sativus])

HSP 1 Score: 54.3 bits (129), Expect = 1.1e-04
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1


Query: 1  MEAIDILIEAWQRDGLSTSEVADKFS 27
          MEAIDILIEAWQRDGLSTSEVADKFS
Sbjct: 64 MEAIDILIEAWQRDGLSTSEVADKFS 89

HSP 2 Score: 98.6 bits (244), Expect = 4.9e-18
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 1


Query: 26  SSGNGQGRGFKCTAGIMASEAVALFRSFYEQGNPNAPKPHRPLVNHQVDQ 76
           +SGNG GRGFKCTAGIMASEAV LFRSFYEQGNPNAPKPHRPLVNHQ  Q
Sbjct: 142 TSGNGLGRGFKCTAGIMASEAVGLFRSFYEQGNPNAPKPHRPLVNHQAGQ 191

[Close]

BLAST of Cla018857 vs. NCBI nr
Match: gi|659107169|ref|XP_008453556.1| (PREDICTED: tRNA-specific adenosine deaminase 2 isoform X2 [Cucumis melo])

HSP 1 Score: 54.3 bits (129), Expect = 1.1e-04
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1


Query: 1  MEAIDILIEAWQRDGLSTSEVADKFS 27
          MEAIDILIEAWQRDGLSTSEVADKFS
Sbjct: 64 MEAIDILIEAWQRDGLSTSEVADKFS 89

HSP 2 Score: 97.1 bits (240), Expect = 1.4e-17
Identity = 53/102 (51.96%), Postives = 61/102 (59.80%), Query Frame = 1


Query: 1   MEAIDILIEAWQRDGLSTSEVADKFS-------------------------SGN------ 60
           MEAID+L+E WQ+ GLSTSEVA+KFS                         SGN      
Sbjct: 116 MEAIDVLLEQWQKSGLSTSEVAEKFSKCIKEVYYGCANDKFGGCGSILSLHSGNYQPLNS 175

Query: 61  ---GQGRGFKCTAGIMASEAVALFRSFYEQGNPNAPKPHRPL 69
               Q +GFKCT G+MASEAV+L R FYEQGNPNAPKPHRP+
Sbjct: 176 EEAAQWKGFKCTGGVMASEAVSLLRCFYEQGNPNAPKPHRPV 217

[Close]

BLAST of Cla018857 vs. NCBI nr
Match: gi|922340021|ref|XP_003624730.2| (tRNA-specific adenosine deaminase [Medicago truncatula])

HSP 1 Score: 82.8 bits (203), Expect = 2.8e-13
Identity = 49/117 (41.88%), Postives = 58/117 (49.57%), Query Frame = 1


Query: 1   MEAIDILIEAWQRDGLSTSEVADKFSS--------------------------------- 60
           MEAID+L+E WQ++GLS +EVA KFS+                                 
Sbjct: 58  MEAIDVLLEQWQKNGLSMTEVAKKFSNCSLYVTCEPCIMCASALSNLGIKEVFYGCSNDK 117

Query: 61  --GNGQ------------GRGFKCTAGIMASEAVALFRSFYEQGNPNAPKPHRPLVN 71
             G G              +GFKC  GIMA EAV L R+FYEQGNPNAPKPHRPL +
Sbjct: 118 FGGCGSILSLHLSDAVSPNKGFKCAGGIMAEEAVLLLRTFYEQGNPNAPKPHRPLAH 174

[Close]

BLAST of Cla018857 vs. NCBI nr
Match: gi|1000942769|ref|XP_015582177.1| (PREDICTED: tRNA-specific adenosine deaminase 2 isoform X5 [Ricinus communis])

HSP 1 Score: 82.8 bits (203), Expect = 2.8e-13
Identity = 44/88 (50.00%), Postives = 51/88 (57.95%), Query Frame = 1


Query: 1   MEAIDILIEAWQRD--------------------GLSTSEVADKFSSGNGQGRGFKCTAG 60
           MEAID+L+E WQ+                      L +S      S    QG+GFKCT G
Sbjct: 75  MEAIDVLLEQWQKGIEEVYYGCANDKFGGCGSILPLHSSSTQSLTSGVVAQGKGFKCTGG 134

Query: 61  IMASEAVALFRSFYEQGNPNAPKPHRPL 69
           IMASEAV+L R FYEQGNPNAPKPHRP+
Sbjct: 135 IMASEAVSLLRCFYEQGNPNAPKPHRPV 162

The following BLAST results are available for this feature:

BLAST of Cla018857 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZX4_CUCSA	3.4e-18	90.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G425900 PE=4 SV=1	[more]
A0A0A0LZX4_CUCSA	7.4e-05	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G425900 PE=4 SV=1	[more]
A0A0D2V5A2_GOSRA	4.3e-13	66.07	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G114300 PE=4 SV=1	[more]
A0A0D2V5A2_GOSRA	8.5e-01	73.08	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G114300 PE=4 SV=1	[more]
A0A0D2V4B3_GOSRA	8.5e-01	73.08	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G114300 PE=4 SV=1	[more]

BLAST of Cla018857 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457197\|ref\|XP_004146335.1\|	4.9e-18	90.00	PREDICTED: tRNA-specific adenosine deaminase 2 isoform X2 [Cucumis sativus]	[more]
gi\|449457197\|ref\|XP_004146335.1\|	1.1e-04	100.00	PREDICTED: tRNA-specific adenosine deaminase 2 isoform X2 [Cucumis sativus]	[more]
gi\|659107169\|ref\|XP_008453556.1\|	1.1e-04	100.00	PREDICTED: tRNA-specific adenosine deaminase 2 isoform X2 [Cucumis melo]	[more]
gi\|922340021\|ref\|XP_003624730.2\|	2.8e-13	41.88	tRNA-specific adenosine deaminase [Medicago truncatula]	[more]
gi\|1000942769\|ref\|XP_015582177.1\|	2.8e-13	50.00	PREDICTED: tRNA-specific adenosine deaminase 2 isoform X5 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003824	catalytic activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU32154	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU32797	watermelon EST collection version 2.0	transcribed_cluster
WMU52735	watermelon EST collection version 2.0	transcribed_cluster
WMU73793	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla018857	Cla018857.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU32797	WMU32797	transcribed_cluster
WMU73793	WMU73793	transcribed_cluster
WMU52735	WMU52735	transcribed_cluster
WMU32154	WMU32154	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.140.10		coord: 23..65 score: 1.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla018857	Csa1G425900	Cucumber (Chinese Long) v2	cuwmB079
Cla018857	MELO3C017427	Melon (DHL92) v3.5.1	mewmB289
Cla018857	ClCG06G013620	Watermelon (Charleston Gray)	wcgwmB344
Cla018857	CSPI01G20580	Wild cucumber (PI 183967)	cpiwmB087
Cla018857	Cucsa.282130	Cucumber (Gy14) v1	cgywmB517
Cla018857	CmaCh11G003610	Cucurbita maxima (Rimu)	cmawmB143
Cla018857	CmoCh11G003640	Cucurbita moschata (Rifu)	cmowmB128
Cla018857	Lsi06G012050	Bottle gourd (USVL1VR-Ls)	lsiwmB414
Cla018857	Cp4.1LG04g13410	Cucurbita pepo (Zucchini)	cpewmB679
Cla018857	CsGy1G020400	Cucumber (Gy14) v2	cgybwmB080
Cla018857	MELO3C017427.2	Melon (DHL92) v3.6.1	medwmB283
Cla018857	Carg09052	Silver-seed gourd	carwmB0594
Cla018857	CsaV3_1G031890	Cucumber (Chinese Long) v3	cucwmB092

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla018857	Cucumber (Chinese Long) v3	cucwmB181
Cla018857	Watermelon (97103) v2	wmwmbB392
Cla018857	Watermelon (97103) v2	wmwmbB406
Cla018857	Wax gourd	wgowmB684
Cla018857	Watermelon (97103) v1	wmwmB166
Cla018857	Cucumber (Gy14) v1	cgywmB109
Cla018857	Cucurbita maxima (Rimu)	cmawmB071
Cla018857	Cucurbita maxima (Rimu)	cmawmB180
Cla018857	Cucurbita maxima (Rimu)	cmawmB772
Cla018857	Cucurbita moschata (Rifu)	cmowmB063
Cla018857	Cucurbita moschata (Rifu)	cmowmB167
Cla018857	Cucurbita moschata (Rifu)	cmowmB766
Cla018857	Melon (DHL92) v3.5.1	mewmB440
Cla018857	Watermelon (Charleston Gray)	wcgwmB113
Cla018857	Cucumber (Chinese Long) v2	cuwmB170
Cla018857	Cucurbita pepo (Zucchini)	cpewmB129
Cla018857	Cucurbita pepo (Zucchini)	cpewmB372
Cla018857	Cucurbita pepo (Zucchini)	cpewmB820
Cla018857	Bottle gourd (USVL1VR-Ls)	lsiwmB121
Cla018857	Cucumber (Gy14) v2	cgybwmB160
Cla018857	Melon (DHL92) v3.6.1	medwmB426
Cla018857	Silver-seed gourd	carwmB0789
Cla018857	Silver-seed gourd	carwmB0995