Cla018693 (gene) Watermelon (97103) v1

NameCla018693
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionEukaryotic translation initiation factor 6 (AHRD V1 ***- B4FKD5_MAIZE); contains Interpro domain(s) IPR002769 Translation initiation factor IF6
LocationChr6 : 21058257 .. 21060859 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACCAGTAAGTCTCACCAAGTCTTTCCTTCCATTTCCGTGTATCATCATTTTACATATGTTCTGGTTTCTTCCTCGGCTACTTTTATTATATGCCTTTTTAAGGATATTCTTTTGGTTTGTGTCAACGTCAATATTTCTCACATGCTATGGTTCTTTAGGGCTTATGTTTGAGAATTCTTGTGAAATTGGGGTTTTCTCCAAGCTCACTAATGCTTACTGCTTGGTTGCAATTGGTGGCTCTGAGAATTTCTACAGGTTCTTTCTTTTTCCTTTCCTGTTTCCTGGCTGTGTTTCTGTATCTTTTGAACTGGAAGTAATTTCTCATAAATATTTTCATGTTTAGTACCTTCGAAACTGAATTAGGTGGTGTCATTCCGGTTGTTAAAGCATCTATTGATGGCACTCGCATTATTGGCCGTCTTTGTGCTGGTTTGTAAAACTCACTCACATTTTCTGCATCTTTTAACAGAAGGGTACCCATTAATTATGTGAGGCCCAAACTACTCATCTTCACGTTTACATAACACTGTTTTCATTTCGTACTGCAGGAAACAAAAATGGACTTCTTGTACCACACACCACTACTGACCAAGGCAAGCTTCTTTTCTATCTTGTCATATTACACCTTTAAGTTAATAGTTGGGGTGTAGACCTGCAGTACCACATCTCTTTGAATATATTTGTATCTTTCTTTTATCATGTAAGAGAGTTTTGAATTGGGGGCTAATGAAATTAAAATCAATATGCTCTTCTGTTAAAAATTTTACTTAATGGTCAACTGCTTCTTCTTCTTCTTTTTTTTTTTTTTTTTGCACTAATGATGTCTGATTCTGGCCTAAGATGATGAAATTGTAAATGGTTACCGCCTTGATAAACAAGAGTCTTGGATTATTGTTATGTCTGATTGCATTGTGATTTTGAATTATTAAATTGAATGTCTATTTGGAGGTTCCATTTTGTGGTGTCGGTGAAGCCCTCGTTTCTTAGGTAATCCTAGCTGTTACTACCAAATTGATAAGCGATGTCATCTTTCAACATTTGTAGGTTAACACGTTGGTTGTTGTGTTTTCCACTGCTACCTCTTATTTCCTTTGTAATATTTTTCTTTGAAGTATCTAAACTCATGACCTTAGTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTTTTGTTTTTTTCTATCTCATAAATGAAATGTTACTATTTCTTATAAAAAATAAAAGAAGTATCAATATCTTTGTGTGAACATAGGATGAGAAATGTATATGTTTTTTTAATGAAAAAGAATGAGAAATAAATTGCCCACATGTTTATGAATATAGCAACTGCATCATTATGCAATAATGAATTCATGTCTTGCACATGATGCCTGAAACGTAACCATTGTTGTTATTGAATGTTTTGTGTTTATACAACTTACATTAGTGAGGACGCATCATGTAATTAAAATTTGTTCGGACTTGCACGAAACTCTCCTCGATGTTCTTTAATTTTTGTTACTAGGTGATATGTGTATGGCCAAATTACTTAACTGGCATTATGTTCCTATTCTTTGCATTTTGAAGAACTTCAGCATTTGAGGAACAGTCTACCTGACCAAGTTGTTGTTCAACGTATACAAGAGAGACTGTCTGCTCTGGGGAATACAATTGCTTGTAACGATCATGTTGCTCTCACACATACTGATCTTGATCGGGTATTTTTTTTATACTTATCCTTCCCACTTTACATTATTCTTCTAGTGTCACTTTCTGCATTACCATCAGATTGTTCAGCTTGCAATCTCTTAAACAGTGTTCTCCCATTTCAATCTGGTCATATCATGTCTCTAATATTATAGTTCCTAGAAAATGTTTACGAAAGAGCGTGTACCTACCTTGGATGCAATAGCTTCTTTTGAGCAGTGGGTAATTTCTAACTGAGTGTCAATGTTAAGCACATATCCAAATAAAGACAGGACATTATACAGAATATGGACTCTTTGATTGGTTCTCTTCTTAAAAACAGTATTTTTTTTTGCAAAGTATACATCTGGAACTTTAAATTTGTTTAGTTATGTCATCCATTCCTCTTTTTCAAATAAATAATCGAGTTCTCTCATTGATCAGGAAACTGAAGAGCTCATTGCTGATGTTCTTGGAGTAGAGGTCTTTAGGCAGACAGTAGCAGGCAACGTTCTCGTGGGAAGCTACTGTAATTTCACGAATAGGGGCGGCTTGGTAATATTCACCTTCCATGCTCCTTAACCATGTGTAGTCACCCTATTGAACTTCATTCCTTCAACCTCATGTAAAAAAATTCCCTGAAAGTTGGAATTATGCAAATATTCTGCAGGTTCATCCACATACATCTGTTGAAGATTTGGATGAGCTATCAACCCTTCTTCAAGTCCCTTTAGTTGCTGGAACCGTGAATCGTGGAAGTGAAGTGATTGCTGCTGGATTGACAGCAAATGACTGGACTGCATTTTGTGGTTCTGACACCACTGCCACCGAGTTATCGGTCATTGAGAGCGTTTTCAAATTGAGGGAGGCTCAACCAAGTTCCATTGTTGAAGAAATGAGGAAGTCGCTAATAGACAGTTATGTGTGA

mRNA sequence

ATGGCGACCAGGCTTATGTTTGAGAATTCTTGTGAAATTGGGGTTTTCTCCAAGCTCACTAATGCTTACTGCTTGGTTGCAATTGGTGGCTCTGAGAATTTCTACAGTACCTTCGAAACTGAATTAGGTGGTGTCATTCCGGTTGTTAAAGCATCTATTGATGGCACTCGCATTATTGGCCGTCTTTGTGCTGAACTTCAGCATTTGAGGAACAGTCTACCTGACCAAGTTGTTGTTCAACGTATACAAGAGAGACTGTCTGCTCTGGGGAATACAATTGCTTGTAACGATCATGTTGCTCTCACACATACTGATCTTGATCGGGAAACTGAAGAGCTCATTGCTGATGTTCTTGGAGTAGAGGTCTTTAGGCAGACAGTAGCAGGCAACGTTCTCGTGGGAAGCTACTGTAATTTCACGAATAGGGGCGGCTTGGTTCATCCACATACATCTGTTGAAGATTTGGATGAGCTATCAACCCTTCTTCAAGTCCCTTTAGTTGCTGGAACCGTGAATCGTGGAAGTGAAGTGATTGCTGCTGGATTGACAGCAAATGACTGGACTGCATTTTGTGGTTCTGACACCACTGCCACCGAGTTATCGGTCATTGAGAGCGTTTTCAAATTGAGGGAGGCTCAACCAAGTTCCATTGTTGAAGAAATGAGGAAGTCGCTAATAGACAGTTATGTGTGA

Coding sequence (CDS)

ATGGCGACCAGGCTTATGTTTGAGAATTCTTGTGAAATTGGGGTTTTCTCCAAGCTCACTAATGCTTACTGCTTGGTTGCAATTGGTGGCTCTGAGAATTTCTACAGTACCTTCGAAACTGAATTAGGTGGTGTCATTCCGGTTGTTAAAGCATCTATTGATGGCACTCGCATTATTGGCCGTCTTTGTGCTGAACTTCAGCATTTGAGGAACAGTCTACCTGACCAAGTTGTTGTTCAACGTATACAAGAGAGACTGTCTGCTCTGGGGAATACAATTGCTTGTAACGATCATGTTGCTCTCACACATACTGATCTTGATCGGGAAACTGAAGAGCTCATTGCTGATGTTCTTGGAGTAGAGGTCTTTAGGCAGACAGTAGCAGGCAACGTTCTCGTGGGAAGCTACTGTAATTTCACGAATAGGGGCGGCTTGGTTCATCCACATACATCTGTTGAAGATTTGGATGAGCTATCAACCCTTCTTCAAGTCCCTTTAGTTGCTGGAACCGTGAATCGTGGAAGTGAAGTGATTGCTGCTGGATTGACAGCAAATGACTGGACTGCATTTTGTGGTTCTGACACCACTGCCACCGAGTTATCGGTCATTGAGAGCGTTTTCAAATTGAGGGAGGCTCAACCAAGTTCCATTGTTGAAGAAATGAGGAAGTCGCTAATAGACAGTTATGTGTGA

Protein sequence

MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKASIDGTRIIGRLCAELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV
BLAST of Cla018693 vs. Swiss-Prot
Match: IF62_ARATH (Eukaryotic translation initiation factor 6-2 OS=Arabidopsis thaliana GN=EIF6-2 PE=2 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 1.7e-109
Identity = 199/245 (81.22%), Postives = 216/245 (88.16%), Query Frame = 1

Query: 1   MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKASIDGTRIIG 60
           MATRL FEN+CE+GVFSKLTNAYCLVAIGGSENFYS FE+EL  VIP+VK SI GTRIIG
Sbjct: 1   MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFESELADVIPIVKTSIGGTRIIG 60

Query: 61  RLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
           RLCA               ELQHLRNSLPDQVVVQRI ERLSALGN IACND+VAL HTD
Sbjct: 61  RLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDYVALAHTD 120

Query: 121 LDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVP 180
           LD+ETEE+IADVLGVEVFRQT+AGN+LVGSYC  +N+GG+VHPHTSVEDL+ELSTLLQVP
Sbjct: 121 LDKETEEIIADVLGVEVFRQTIAGNILVGSYCALSNKGGMVHPHTSVEDLEELSTLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSL 231
           LVAGTVNRGSEVIAAG+T NDWT+FCGSDTTATELSVI+S+FKLREAQPSSIV+EMRKSL
Sbjct: 181 LVAGTVNRGSEVIAAGMTVNDWTSFCGSDTTATELSVIDSIFKLREAQPSSIVDEMRKSL 240

BLAST of Cla018693 vs. Swiss-Prot
Match: IF6_BOVIN (Eukaryotic translation initiation factor 6 OS=Bos taurus GN=EIF6 PE=2 SV=2)

HSP 1 Score: 340.1 bits (871), Expect = 1.9e-92
Identity = 173/243 (71.19%), Postives = 191/243 (78.60%), Query Frame = 1

Query: 1   MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKASIDGTRIIG 60
           MA R  FEN+CEIG F+KLTN+YCLVAIGGSENFYS FE EL G IPVV ASI G RIIG
Sbjct: 1   MAVRASFENNCEIGCFAKLTNSYCLVAIGGSENFYSVFEGELAGTIPVVHASIAGCRIIG 60

Query: 61  RLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
           R+C                ELQH+RN LPD V ++R++ERLSALGN   CND+VAL H D
Sbjct: 61  RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query: 121 LDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVP 180
           LDRETEE++ADVL VEVFRQTVA  VLVGSYC F+N+GGLVHP TS+ED DELS+LLQVP
Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSL 229
           LVAGTVNRGSEVIAAG+  NDW AFCG DTT+TELSV+ESVFKL EAQPS+I   MR SL
Sbjct: 181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL 240

BLAST of Cla018693 vs. Swiss-Prot
Match: IF6_MOUSE (Eukaryotic translation initiation factor 6 OS=Mus musculus GN=Eif6 PE=1 SV=2)

HSP 1 Score: 338.6 bits (867), Expect = 5.4e-92
Identity = 172/243 (70.78%), Postives = 191/243 (78.60%), Query Frame = 1

Query: 1   MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKASIDGTRIIG 60
           MA R  FEN+CE+G F+KLTNAYCLVAIGGSENFYS FE EL   IPVV ASI G RIIG
Sbjct: 1   MAVRASFENNCEVGCFAKLTNAYCLVAIGGSENFYSVFEGELSDAIPVVHASIAGCRIIG 60

Query: 61  RLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
           R+C                ELQH+RNSLPD V ++R++ERLSALGN   CND+VAL H D
Sbjct: 61  RMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query: 121 LDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVP 180
           LDRETEE++ADVL VEVFRQTVA  VLVGSYC F+N+GGLVHP TS+ED DELS+LLQVP
Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSL 229
           LVAGTVNRGSEVIAAG+  NDW AFCG DTT+TELSV+ESVFKL EA+PS+I   MR SL
Sbjct: 181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSL 240

BLAST of Cla018693 vs. Swiss-Prot
Match: IF6_HUMAN (Eukaryotic translation initiation factor 6 OS=Homo sapiens GN=EIF6 PE=1 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 5.4e-92
Identity = 173/243 (71.19%), Postives = 190/243 (78.19%), Query Frame = 1

Query: 1   MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKASIDGTRIIG 60
           MA R  FEN+CEIG F+KLTN YCLVAIGGSENFYS FE EL   IPVV ASI G RIIG
Sbjct: 1   MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG 60

Query: 61  RLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
           R+C                ELQH+RNSLPD V ++R++ERLSALGN   CND+VAL H D
Sbjct: 61  RMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query: 121 LDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVP 180
           LDRETEE++ADVL VEVFRQTVA  VLVGSYC F+N+GGLVHP TS+ED DELS+LLQVP
Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSL 229
           LVAGTVNRGSEVIAAG+  NDW AFCG DTT+TELSV+ESVFKL EAQPS+I   MR SL
Sbjct: 181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL 240

BLAST of Cla018693 vs. Swiss-Prot
Match: IF6_RAT (Eukaryotic translation initiation factor 6 OS=Rattus norvegicus GN=Eif6 PE=1 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 1.6e-91
Identity = 171/243 (70.37%), Postives = 190/243 (78.19%), Query Frame = 1

Query: 1   MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKASIDGTRIIG 60
           MA R  FEN+CE+G F+KLTN YCLVAIGGSENFYS FE EL   IPVV ASI G RIIG
Sbjct: 1   MAVRASFENNCEVGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG 60

Query: 61  RLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
           R+C                ELQH+RNSLPD V ++R++ERLSALGN   CND+VAL H D
Sbjct: 61  RMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query: 121 LDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVP 180
           LDRETEE++ADVL VEVFRQTVA  VLVGSYC F+N+GGLVHP TS+ED DELS+LLQVP
Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSL 229
           LVAGTVNRGSEVIAAG+  NDW AFCG DTT+TELSV+ESVFKL EA+PS+I   MR SL
Sbjct: 181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSL 240

BLAST of Cla018693 vs. TrEMBL
Match: A0A0A0M1J5_CUCSA (Eukaryotic translation initiation factor 6 OS=Cucumis sativus GN=EIF6 PE=3 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 2.1e-114
Identity = 219/245 (89.39%), Postives = 225/245 (91.84%), Query Frame = 1

Query: 1   MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKASIDGTRIIG 60
           MA RLMFENSC+IGVFSKLTNAYCLVAIGGSENFYSTFETE+ GVIPVVKASI GTRIIG
Sbjct: 1   MAIRLMFENSCDIGVFSKLTNAYCLVAIGGSENFYSTFETEIRGVIPVVKASIGGTRIIG 60

Query: 61  RLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
           RLCA               ELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVAL H+D
Sbjct: 61  RLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHSD 120

Query: 121 LDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVP 180
           LDRETEELIADVLGVEVFRQTVAGNVLVGSY +FTNRGGLVHPHTSVEDLDELSTLLQVP
Sbjct: 121 LDRETEELIADVLGVEVFRQTVAGNVLVGSYSSFTNRGGLVHPHTSVEDLDELSTLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSL 231
           LVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIE+VFKLREAQPSSIVEEMRKSL
Sbjct: 181 LVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIENVFKLREAQPSSIVEEMRKSL 240

BLAST of Cla018693 vs. TrEMBL
Match: A0A0A0LJY3_CUCSA (Eukaryotic translation initiation factor 6 OS=Cucumis sativus GN=EIF6 PE=3 SV=1)

HSP 1 Score: 418.7 bits (1075), Expect = 4.6e-114
Identity = 217/245 (88.57%), Postives = 223/245 (91.02%), Query Frame = 1

Query: 1   MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKASIDGTRIIG 60
           MATRLMFENSCEIGVFSKLTN+YCLVAIGGSE+FYSTFE ELG VIPVVK SI GTRIIG
Sbjct: 1   MATRLMFENSCEIGVFSKLTNSYCLVAIGGSEDFYSTFEAELGAVIPVVKTSIHGTRIIG 60

Query: 61  RLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
           RLCA               ELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVAL HTD
Sbjct: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTD 120

Query: 121 LDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVP 180
           LDRETE+LIADVLGVEVFRQTVAGN LVGSYC+FTNRGGLVHPHTS+EDLDELSTLLQVP
Sbjct: 121 LDRETEDLIADVLGVEVFRQTVAGNDLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSL 231
           LVAGTVNRGS VIAAGLTANDWTAFCGSDT+ATELSVIESVFKLREAQPSSIVEEMRKSL
Sbjct: 181 LVAGTVNRGSAVIAAGLTANDWTAFCGSDTSATELSVIESVFKLREAQPSSIVEEMRKSL 240

BLAST of Cla018693 vs. TrEMBL
Match: A0A067FVY8_CITSI (Eukaryotic translation initiation factor 6 OS=Citrus sinensis GN=EIF6 PE=3 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 1.5e-112
Identity = 210/245 (85.71%), Postives = 222/245 (90.61%), Query Frame = 1

Query: 1   MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKASIDGTRIIG 60
           MATRLMFENSCE+GVFSKLTNAYCLVAIGGSE+FYSTFE EL  V PVVK SI GTRIIG
Sbjct: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60

Query: 61  RLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
           RLCA               ELQHLRNSLPDQVVVQRI+ERLSALGN IACNDHVALTHTD
Sbjct: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120

Query: 121 LDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVP 180
           LDRETEE+IADVLGVEVFRQT+AGN+LVGSYC+F+NRGGLVHPHTS+EDLDELSTLLQVP
Sbjct: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSL 231
           LVAGTVNRGSEVIAAGLT NDWTAFCGSDTTATELSVIESVFKLREAQPS++V+EMRKSL
Sbjct: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240

BLAST of Cla018693 vs. TrEMBL
Match: V4SN16_9ROSI (Eukaryotic translation initiation factor 6 OS=Citrus clementina GN=EIF6 PE=3 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 1.9e-112
Identity = 210/245 (85.71%), Postives = 222/245 (90.61%), Query Frame = 1

Query: 1   MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKASIDGTRIIG 60
           MATRLMFENSCE+GVFSKL NAYCLVAIGGSE+FYSTFE EL  VIPVVK SI GTRIIG
Sbjct: 1   MATRLMFENSCEVGVFSKLANAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIG 60

Query: 61  RLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
           RLCA               ELQHLRNSLPDQVVVQRI+ERLSALGN IACNDHVALTHTD
Sbjct: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120

Query: 121 LDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVP 180
           LDRETEE+IADVLGVEVFRQT+AGN+LVGSYC+F+NRGGLVHPHTS+EDLDELSTLLQVP
Sbjct: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSL 231
           LVAGTVNRGSEVIAAGLT NDWTAFCGSDTTATELSVIESVFKLREAQPS++V+EMRKSL
Sbjct: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240

BLAST of Cla018693 vs. TrEMBL
Match: A0A059AIS7_EUCGR (Eukaryotic translation initiation factor 6 OS=Eucalyptus grandis GN=EIF6 PE=3 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 2.5e-112
Identity = 210/245 (85.71%), Postives = 222/245 (90.61%), Query Frame = 1

Query: 1   MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKASIDGTRIIG 60
           MATRL FENSCE+GVFSKLTNAYCLVAIGGSENFYSTFET+L  VIPVVK SI GTRIIG
Sbjct: 1   MATRLQFENSCEVGVFSKLTNAYCLVAIGGSENFYSTFETDLADVIPVVKTSIAGTRIIG 60

Query: 61  RLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
           RLCA               ELQHLRNSLPDQVVVQRI+ERLSALGN IACNDHVALTHTD
Sbjct: 61  RLCAGNKNGLLLPHNTTDQELQHLRNSLPDQVVVQRIEERLSALGNGIACNDHVALTHTD 120

Query: 121 LDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVP 180
           LD+ETEE+IADVLGVEVFRQT+AGN+LVGSYC F+NRGGLVHPHTS+EDLDELSTLLQVP
Sbjct: 121 LDKETEEIIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSL 231
           LVAGTVNRGSEVIAAG+T NDWTAFCGSDTTATELSVIESVFKLREAQPS+IV+EMRKSL
Sbjct: 181 LVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSL 240

BLAST of Cla018693 vs. NCBI nr
Match: gi|659099525|ref|XP_008450645.1| (PREDICTED: eukaryotic translation initiation factor 6-2 [Cucumis melo])

HSP 1 Score: 422.9 bits (1086), Expect = 3.5e-115
Identity = 220/245 (89.80%), Postives = 225/245 (91.84%), Query Frame = 1

Query: 1   MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKASIDGTRIIG 60
           MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYS FETEL GVIPVVKASI GTRIIG
Sbjct: 1   MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFETELRGVIPVVKASIGGTRIIG 60

Query: 61  RLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
           RLCA               ELQHLRNSLPDQVV+QRIQERLSALGNTI+CNDHVAL HTD
Sbjct: 61  RLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVIQRIQERLSALGNTISCNDHVALAHTD 120

Query: 121 LDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVP 180
           LDRETE+LIADVLGVEVFRQTVAGNVLVGSY +FTNRGGLVHPHTSVEDLDELSTLLQVP
Sbjct: 121 LDRETEDLIADVLGVEVFRQTVAGNVLVGSYSSFTNRGGLVHPHTSVEDLDELSTLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSL 231
           LVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIE+VFKLREAQPSSIVEEMRKSL
Sbjct: 181 LVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIENVFKLREAQPSSIVEEMRKSL 240

BLAST of Cla018693 vs. NCBI nr
Match: gi|659121875|ref|XP_008460856.1| (PREDICTED: eukaryotic translation initiation factor 6-2-like [Cucumis melo])

HSP 1 Score: 420.2 bits (1079), Expect = 2.3e-114
Identity = 217/245 (88.57%), Postives = 224/245 (91.43%), Query Frame = 1

Query: 1   MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKASIDGTRIIG 60
           MATRLMFENSCEIGVFSKLTN+YCLVAIGGSE+FYSTFE ELG VIPVVK SI GTRIIG
Sbjct: 1   MATRLMFENSCEIGVFSKLTNSYCLVAIGGSEDFYSTFEAELGAVIPVVKTSIHGTRIIG 60

Query: 61  RLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
           RLCA               ELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD
Sbjct: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120

Query: 121 LDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVP 180
           LDRETE+LIADVLGVEVFRQT+AGN LVGSYC+FTNRGGLVHPHTS+EDLDELSTLLQVP
Sbjct: 121 LDRETEDLIADVLGVEVFRQTIAGNDLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSL 231
           LVAGTVNRGS VIAAGLTANDWTAFCGSDT+ATELSVIESVFKLREAQPSSIVEEMRKSL
Sbjct: 181 LVAGTVNRGSAVIAAGLTANDWTAFCGSDTSATELSVIESVFKLREAQPSSIVEEMRKSL 240

BLAST of Cla018693 vs. NCBI nr
Match: gi|449435671|ref|XP_004135618.1| (PREDICTED: eukaryotic translation initiation factor 6-2 [Cucumis sativus])

HSP 1 Score: 419.9 bits (1078), Expect = 3.0e-114
Identity = 219/245 (89.39%), Postives = 225/245 (91.84%), Query Frame = 1

Query: 1   MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKASIDGTRIIG 60
           MA RLMFENSC+IGVFSKLTNAYCLVAIGGSENFYSTFETE+ GVIPVVKASI GTRIIG
Sbjct: 1   MAIRLMFENSCDIGVFSKLTNAYCLVAIGGSENFYSTFETEIRGVIPVVKASIGGTRIIG 60

Query: 61  RLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
           RLCA               ELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVAL H+D
Sbjct: 61  RLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHSD 120

Query: 121 LDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVP 180
           LDRETEELIADVLGVEVFRQTVAGNVLVGSY +FTNRGGLVHPHTSVEDLDELSTLLQVP
Sbjct: 121 LDRETEELIADVLGVEVFRQTVAGNVLVGSYSSFTNRGGLVHPHTSVEDLDELSTLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSL 231
           LVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIE+VFKLREAQPSSIVEEMRKSL
Sbjct: 181 LVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIENVFKLREAQPSSIVEEMRKSL 240

BLAST of Cla018693 vs. NCBI nr
Match: gi|449459212|ref|XP_004147340.1| (PREDICTED: eukaryotic translation initiation factor 6-2 [Cucumis sativus])

HSP 1 Score: 418.7 bits (1075), Expect = 6.6e-114
Identity = 217/245 (88.57%), Postives = 223/245 (91.02%), Query Frame = 1

Query: 1   MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKASIDGTRIIG 60
           MATRLMFENSCEIGVFSKLTN+YCLVAIGGSE+FYSTFE ELG VIPVVK SI GTRIIG
Sbjct: 1   MATRLMFENSCEIGVFSKLTNSYCLVAIGGSEDFYSTFEAELGAVIPVVKTSIHGTRIIG 60

Query: 61  RLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
           RLCA               ELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVAL HTD
Sbjct: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTD 120

Query: 121 LDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVP 180
           LDRETE+LIADVLGVEVFRQTVAGN LVGSYC+FTNRGGLVHPHTS+EDLDELSTLLQVP
Sbjct: 121 LDRETEDLIADVLGVEVFRQTVAGNDLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSL 231
           LVAGTVNRGS VIAAGLTANDWTAFCGSDT+ATELSVIESVFKLREAQPSSIVEEMRKSL
Sbjct: 181 LVAGTVNRGSAVIAAGLTANDWTAFCGSDTSATELSVIESVFKLREAQPSSIVEEMRKSL 240

BLAST of Cla018693 vs. NCBI nr
Match: gi|568825493|ref|XP_006467112.1| (PREDICTED: eukaryotic translation initiation factor 6-2 [Citrus sinensis])

HSP 1 Score: 415.2 bits (1066), Expect = 7.3e-113
Identity = 211/245 (86.12%), Postives = 223/245 (91.02%), Query Frame = 1

Query: 1   MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKASIDGTRIIG 60
           MATRLMFENSCE+GVFSKLTNAYCLVAIGGSE+FYSTFE EL  VIPVVK SI GTRIIG
Sbjct: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIG 60

Query: 61  RLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
           RLCA               ELQHLRNSLPDQVVVQRI+ERLSALGN IACNDHVALTHTD
Sbjct: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120

Query: 121 LDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVP 180
           LDRETEE+IADVLGVEVFRQT+AGN+LVGSYC+F+NRGGLVHPHTS+EDLDELSTLLQVP
Sbjct: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSL 231
           LVAGTVNRGSEVIAAGLT NDWTAFCGSDTTATELSVIESVFKLREAQPS++V+EMRKSL
Sbjct: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
IF62_ARATH1.7e-10981.22Eukaryotic translation initiation factor 6-2 OS=Arabidopsis thaliana GN=EIF6-2 P... [more]
IF6_BOVIN1.9e-9271.19Eukaryotic translation initiation factor 6 OS=Bos taurus GN=EIF6 PE=2 SV=2[more]
IF6_MOUSE5.4e-9270.78Eukaryotic translation initiation factor 6 OS=Mus musculus GN=Eif6 PE=1 SV=2[more]
IF6_HUMAN5.4e-9271.19Eukaryotic translation initiation factor 6 OS=Homo sapiens GN=EIF6 PE=1 SV=1[more]
IF6_RAT1.6e-9170.37Eukaryotic translation initiation factor 6 OS=Rattus norvegicus GN=Eif6 PE=1 SV=... [more]
Match NameE-valueIdentityDescription
A0A0A0M1J5_CUCSA2.1e-11489.39Eukaryotic translation initiation factor 6 OS=Cucumis sativus GN=EIF6 PE=3 SV=1[more]
A0A0A0LJY3_CUCSA4.6e-11488.57Eukaryotic translation initiation factor 6 OS=Cucumis sativus GN=EIF6 PE=3 SV=1[more]
A0A067FVY8_CITSI1.5e-11285.71Eukaryotic translation initiation factor 6 OS=Citrus sinensis GN=EIF6 PE=3 SV=1[more]
V4SN16_9ROSI1.9e-11285.71Eukaryotic translation initiation factor 6 OS=Citrus clementina GN=EIF6 PE=3 SV=... [more]
A0A059AIS7_EUCGR2.5e-11285.71Eukaryotic translation initiation factor 6 OS=Eucalyptus grandis GN=EIF6 PE=3 SV... [more]
Match NameE-valueIdentityDescription
gi|659099525|ref|XP_008450645.1|3.5e-11589.80PREDICTED: eukaryotic translation initiation factor 6-2 [Cucumis melo][more]
gi|659121875|ref|XP_008460856.1|2.3e-11488.57PREDICTED: eukaryotic translation initiation factor 6-2-like [Cucumis melo][more]
gi|449435671|ref|XP_004135618.1|3.0e-11489.39PREDICTED: eukaryotic translation initiation factor 6-2 [Cucumis sativus][more]
gi|449459212|ref|XP_004147340.1|6.6e-11488.57PREDICTED: eukaryotic translation initiation factor 6-2 [Cucumis sativus][more]
gi|568825493|ref|XP_006467112.1|7.3e-11386.12PREDICTED: eukaryotic translation initiation factor 6-2 [Citrus sinensis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002769eIF6
Vocabulary: Biological Process
TermDefinition
GO:0042256mature ribosome assembly
Vocabulary: Molecular Function
TermDefinition
GO:0043022ribosome binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0042256 mature ribosome assembly
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0042273 ribosomal large subunit biogenesis
biological_process GO:1902626 assembly of large subunit precursor of preribosome
biological_process GO:0000460 maturation of 5.8S rRNA
biological_process GO:0000470 maturation of LSU-rRNA
biological_process GO:0000054 ribosomal subunit export from nucleus
cellular_component GO:0005829 cytosol
cellular_component GO:0005730 nucleolus
cellular_component GO:0005840 ribosome
cellular_component GO:0030687 preribosome, large subunit precursor
molecular_function GO:0043023 ribosomal large subunit binding
molecular_function GO:0043022 ribosome binding
molecular_function GO:0003743 translation initiation factor activity
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU06743watermelon EST collection version 2.0transcribed_cluster
WMU23856watermelon unigene v2 vs TrEMBLtranscribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla018693Cla018693.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU23856WMU23856transcribed_cluster
WMU06743WMU06743transcribed_cluster


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002769Translation initiation factor IF6HAMAPMF_00032eIF_6coord: 1..230
score: 120
IPR002769Translation initiation factor IF6PIRPIRSF006413Transl_init_IF-6coord: 1..211
score: 2.5
IPR002769Translation initiation factor IF6PANTHERPTHR10784EUKARYOTIC TRANSLATION INITIATION FACTOR 6coord: 2..230
score: 3.0E
IPR002769Translation initiation factor IF6PFAMPF01912eIF-6coord: 4..188
score: 7.5
IPR002769Translation initiation factor IF6SMARTSM00654eIF6neu2coord: 3..189
score: 7.9E
IPR002769Translation initiation factor IF6TIGRFAMsTIGR00323TIGR00323coord: 4..209
score: 1.9
NoneNo IPR availableGENE3DG3DSA:3.75.10.10coord: 1..209
score: 3.8
NoneNo IPR availableunknownSSF55909Penteincoord: 1..209
score: 1.28

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla018693Cla97C06G121190Watermelon (97103) v2wmwmbB406
Cla018693ClCG06G012010Watermelon (Charleston Gray)wcgwmB344
Cla018693Lsi06G010560Bottle gourd (USVL1VR-Ls)lsiwmB420
The following gene(s) are paralogous to this gene:

None