Cla018679 (gene) Watermelon (97103) v1

Overview
NameCla018679
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr6 : 20883634 .. 20883963 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATCAAGTCACTGAGCGCAGCCACAATGAAGTTAGTACTAATATTCTTGGTCTCCATAGCCGTTTTAGCACGACCGGCGACAGCCCGCACGGTGGCAGTGGCGGTAGAACCCAGTTCATCAATATCACAAAATCTCTCTTTCTTAAGTTGTGCTCCATTTATCCTGGATGCGACATTGTGTATGGTCGATGTGATCAAGTTTCCAATTGCTCCTCATCCTTTTTGTTGCAAAGCCATTTTTAAGCTCAATGACTGTGCTCCTGAAATTTTCGAAAAGATTCCCCCGGTTGACATGGATGTTATTAAGAAGATTTGTGCTTTGTAA

mRNA sequence

ATGGCGATCAAGTCACTGAGCGCAGCCACAATGAAGTTAGTACTAATATTCTTGGTCTCCATAGCCGTTTTAGCACGACCGGCGACAGCCCGCACGGTGGCAGTGGCGGTAGAACCCAGTTCATCAATATCACAAAATCTCTCTTTCTTAAGTTGTGCTCCATTTATCCTGGATGCGACATTGTGTATGGTCGATGTGATCAAGTTTCCAATTGCTCCTCATCCTTTTTGTTGCAAAGCCATTTTTAAGCTCAATGACTGTGCTCCTGAAATTTTCGAAAAGATTCCCCCGGTTGACATGGATGTTATTAAGAAGATTTGTGCTTTGTAA

Coding sequence (CDS)

ATGGCGATCAAGTCACTGAGCGCAGCCACAATGAAGTTAGTACTAATATTCTTGGTCTCCATAGCCGTTTTAGCACGACCGGCGACAGCCCGCACGGTGGCAGTGGCGGTAGAACCCAGTTCATCAATATCACAAAATCTCTCTTTCTTAAGTTGTGCTCCATTTATCCTGGATGCGACATTGTGTATGGTCGATGTGATCAAGTTTCCAATTGCTCCTCATCCTTTTTGTTGCAAAGCCATTTTTAAGCTCAATGACTGTGCTCCTGAAATTTTCGAAAAGATTCCCCCGGTTGACATGGATGTTATTAAGAAGATTTGTGCTTTGTAA

Protein sequence

MAIKSLSAATMKLVLIFLVSIAVLARPATARTVAVAVEPSSSISQNLSFLSCAPFILDATLCMVDVIKFPIAPHPFCCKAIFKLNDCAPEIFEKIPPVDMDVIKKICAL
Homology
[Close]
BLAST of Cla018679 vs. TrEMBL
Match: A0A0A0LTD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.8e-26
Identity = 64/110 (58.18%), Postives = 81/110 (73.64%), Query Frame = 1 

Query: 2   AIKSLSAATMKLVLIFLVSIAVLARPATARTVAVAVEPSSSI--SQNLSFLSCAPFILDA 61
           A KS SA+T++L ++FLV I +LA   TART+A A  P   +    + SF +CAPFIL+A
Sbjct: 3   ATKSTSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEA 62

Query: 62  TLCMVDVIKFPIAPHPFCCKAIFKLNDCAPEIFEKIPPVDMDVIKKICAL 110
           T+C+VDVIK P+A HP CCKAI  LNDCAP+I++ IP  DMDVIKKIC L
Sbjct: 63  TMCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKICGL 110

[Close]
BLAST of Cla018679 vs. TrEMBL
Match: A0A0A0LYQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G212820 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 8.2e-21
Identity = 53/108 (49.07%), Postives = 68/108 (62.96%), Query Frame = 1 

Query: 1   MAIKSLSAATMKLVLIFLVSIAVLARPATARTVAVA-VEPSSSISQNLSFLSCAPFILDA 60
           MA KSL   TMKL+L+F+   A+ A PA A  VA+A  +P    ++++SF  C  F+ +A
Sbjct: 1   MAAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEA 60

Query: 61  TLCMVDVIKFPIAPHPFCCKAIFKLNDCAPEIFEKIPPVDMDVIKKIC 108
           T CM+DV K PIA HP CCKAI KL  C+   F  IP  DM VIK +C
Sbjct: 61  TKCMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVC 108

[Close]
BLAST of Cla018679 vs. TrEMBL
Match: A0A0A0LTE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 6.5e-18
Identity = 46/101 (45.54%), Postives = 68/101 (67.33%), Query Frame = 1 

Query: 9   ATMKLVLIFLVSIAVLARPATARTVAVAVEPSSSISQNLSFLSCAPFILDATLCMVDVIK 68
           A++KL +IFLV IA+LA P   RT     + S+   ++++ ++C  F  +AT CM+DV+K
Sbjct: 3   ASLKLPIIFLVCIAILALPVMTRTTTTLDQFST---KDVASVNCTVFTFEATKCMIDVMK 62

Query: 69  FPIAPHPFCCKAIFKLNDCAPEIFEKIPPVDMDVIKKICAL 110
             + PHP CC+AI KLNDC PE+++ +P  D  +IKKIC L
Sbjct: 63  NSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICEL 100

[Close]
BLAST of Cla018679 vs. NCBI nr
Match: gi|700210094|gb|KGN65190.1| (hypothetical protein Csa_1G263450 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 5.5e-26
Identity = 64/110 (58.18%), Postives = 81/110 (73.64%), Query Frame = 1 

Query: 2   AIKSLSAATMKLVLIFLVSIAVLARPATARTVAVAVEPSSSI--SQNLSFLSCAPFILDA 61
           A KS SA+T++L ++FLV I +LA   TART+A A  P   +    + SF +CAPFIL+A
Sbjct: 3   ATKSTSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEA 62

Query: 62  TLCMVDVIKFPIAPHPFCCKAIFKLNDCAPEIFEKIPPVDMDVIKKICAL 110
           T+C+VDVIK P+A HP CCKAI  LNDCAP+I++ IP  DMDVIKKIC L
Sbjct: 63  TMCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKICGL 110

[Close]
BLAST of Cla018679 vs. NCBI nr
Match: gi|700210000|gb|KGN65096.1| (hypothetical protein Csa_1G212820 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-20
Identity = 53/108 (49.07%), Postives = 68/108 (62.96%), Query Frame = 1 

Query: 1   MAIKSLSAATMKLVLIFLVSIAVLARPATARTVAVA-VEPSSSISQNLSFLSCAPFILDA 60
           MA KSL   TMKL+L+F+   A+ A PA A  VA+A  +P    ++++SF  C  F+ +A
Sbjct: 1   MAAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEA 60

Query: 61  TLCMVDVIKFPIAPHPFCCKAIFKLNDCAPEIFEKIPPVDMDVIKKIC 108
           T CM+DV K PIA HP CCKAI KL  C+   F  IP  DM VIK +C
Sbjct: 61  TKCMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVC 108

[Close]
BLAST of Cla018679 vs. NCBI nr
Match: gi|700210099|gb|KGN65195.1| (hypothetical protein Csa_1G263980 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 9.4e-18
Identity = 46/101 (45.54%), Postives = 68/101 (67.33%), Query Frame = 1 

Query: 9   ATMKLVLIFLVSIAVLARPATARTVAVAVEPSSSISQNLSFLSCAPFILDATLCMVDVIK 68
           A++KL +IFLV IA+LA P   RT     + S+   ++++ ++C  F  +AT CM+DV+K
Sbjct: 3   ASLKLPIIFLVCIAILALPVMTRTTTTLDQFST---KDVASVNCTVFTFEATKCMIDVMK 62

Query: 69  FPIAPHPFCCKAIFKLNDCAPEIFEKIPPVDMDVIKKICAL 110
             + PHP CC+AI KLNDC PE+++ +P  D  +IKKIC L
Sbjct: 63  NSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICEL 100

The following BLAST results are available for this feature:
BLAST of Cla018679 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTD6_CUCSA3.8e-2658.18Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263450 PE=4 SV=1[more]
A0A0A0LYQ3_CUCSA8.2e-2149.07Uncharacterized protein OS=Cucumis sativus GN=Csa_1G212820 PE=4 SV=1[more]
A0A0A0LTE1_CUCSA6.5e-1845.54Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263980 PE=4 SV=1[more]
BLAST of Cla018679 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210094|gb|KGN65190.1|5.5e-2658.18hypothetical protein Csa_1G263450 [Cucumis sativus][more]
gi|700210000|gb|KGN65096.1|1.2e-2049.07hypothetical protein Csa_1G212820 [Cucumis sativus][more]
gi|700210099|gb|KGN65195.1|9.4e-1845.54hypothetical protein Csa_1G263980 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla018679Cla018679.1mRNA