Cla018668 (gene) Watermelon (97103) v1

Overview
NameCla018668
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionActivator of heat shock protein ATPase (AHRD V1 ***- D2E9R5_DACGL)
LocationChr4 : 24220066 .. 24220335 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAATGGAGCAGTTTCATCAGAGACCCAACAGGGGGCTTCTTACACTTATTGGGTCAGGGAAGTGCAGCAAGATGCAGCTACACTTCCTGTCCCTCGCAAGCTCTCTGCTGACAATATTCTCGCTTCTCAAGCATCTCAACCACCTACCCTTGGCTCCGTTTGGAATCAGGCTGGAACTTGGGAGGAGAAGAACTTGACTATATGGGATAGTGATAGAATGAAGGAGTTGCTAATTTCGGTGGCCTCCTTGGAGTTCTCCTGGTAA

mRNA sequence

ATGGAGAATGGAGCAGTTTCATCAGAGACCCAACAGGGGGCTTCTTACACTTATTGGGTCAGGGAAGTGCAGCAAGATGCAGCTACACTTCCTGTCCCTCGCAAGCTCTCTGCTGACAATATTCTCGCTTCTCAAGCATCTCAACCACCTACCCTTGGCTCCGTTTGGAATCAGGCTGGAACTTGGGAGGAGAAGAACTTGACTATATGGGATAGTGATAGAATGAAGGAGTTGCTAATTTCGGTGGCCTCCTTGGAGTTCTCCTGGTAA

Coding sequence (CDS)

ATGGAGAATGGAGCAGTTTCATCAGAGACCCAACAGGGGGCTTCTTACACTTATTGGGTCAGGGAAGTGCAGCAAGATGCAGCTACACTTCCTGTCCCTCGCAAGCTCTCTGCTGACAATATTCTCGCTTCTCAAGCATCTCAACCACCTACCCTTGGCTCCGTTTGGAATCAGGCTGGAACTTGGGAGGAGAAGAACTTGACTATATGGGATAGTGATAGAATGAAGGAGTTGCTAATTTCGGTGGCCTCCTTGGAGTTCTCCTGGTAA

Protein sequence

MENGAVSSETQQGASYTYWVREVQQDAATLPVPRKLSADNILASQASQPPTLGSVWNQAGTWEEKNLTIWDSDRMKELLISVASLEFSW
Homology
[Close]
BLAST of Cla018668 vs. TrEMBL
Match: A0A0A0M014_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G651680 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.3e-35
Identity = 79/89 (88.76%), Postives = 83/89 (93.26%), Query Frame = 1 

Query: 1  MEN-GAVSSETQQGASYTYWVREVQQDAATLPVPRKLSADNILASQASQPPTLGSVWNQA 60
          MEN GAVSSETQQGASYTYWVRE +QDAA LPVPRKLSAD+ILASQASQPPTLGSVWN+A
Sbjct: 1  MENGGAVSSETQQGASYTYWVRETRQDAAPLPVPRKLSADDILASQASQPPTLGSVWNRA 60

Query: 61 GTWEEKNLTIWDSDRMKELLISVASLEFS 89
          GTWEEKNL  W SDRMKELL+SVASLEFS
Sbjct: 61 GTWEEKNLNKWASDRMKELLLSVASLEFS 89

[Close]
BLAST of Cla018668 vs. TrEMBL
Match: A0A067JV65_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19791 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.9e-24
Identity = 56/77 (72.73%), Postives = 66/77 (85.71%), Query Frame = 1 

Query: 12 QGASYTYWVREVQQDAATLPVPRKLSADNILASQASQPPTLGSVWNQAGTWEEKNLTIWD 71
          QGASYTYWVRE   DAA LP+P+KLS ++++ SQ SQPPTLGSVWN+AGTWEEKNL  W 
Sbjct: 11 QGASYTYWVREATADAAPLPLPKKLSTNDLITSQ-SQPPTLGSVWNRAGTWEEKNLNKWA 70

Query: 72 SDRMKELLISVASLEFS 89
          +DR+KELL+SV SLEFS
Sbjct: 71 TDRIKELLVSVGSLEFS 86

[Close]
BLAST of Cla018668 vs. TrEMBL
Match: V4WI15_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009500mg PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.9e-24
Identity = 64/94 (68.09%), Postives = 74/94 (78.72%), Query Frame = 1 

Query: 1  MENG-----AVSS-ETQQGASYTYWVREVQQDAATLPVPRKLSADNILASQASQPPTLGS 60
          MENG     AVS  + QQGASYTYWVRE   DAA LPVP+KLS D+IL+++ SQP TLGS
Sbjct: 3  MENGGGVVSAVSEKQEQQGASYTYWVREATADAAPLPVPKKLSPDDILSNK-SQPTTLGS 62

Query: 61 VWNQAGTWEEKNLTIWDSDRMKELLISVASLEFS 89
          VWN+AGTWEEK+L  W SDR+KELL SV S+EFS
Sbjct: 63 VWNRAGTWEEKSLNKWASDRIKELLTSVGSVEFS 95

[Close]
BLAST of Cla018668 vs. TrEMBL
Match: A0A061GS51_THECC (Chaperone binding,ATPase activators OS=Theobroma cacao GN=TCM_039817 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-23
Identity = 59/88 (67.05%), Postives = 70/88 (79.55%), Query Frame = 1 

Query: 1   MENGAVSSETQQGASYTYWVREVQQDAATLPVPRKLSADNILASQASQPPTLGSVWNQAG 60
           MENG V  E QQGASYTYWVRE ++DAA LP+P+KL+  +IL +Q S P TLGSVWN+AG
Sbjct: 30  MENGGV--EKQQGASYTYWVREAKEDAAPLPLPKKLTPQDILCNQ-SHPATLGSVWNRAG 89

Query: 61  TWEEKNLTIWDSDRMKELLISVASLEFS 89
           TWEEKNL  W + R+KELL SV SL+FS
Sbjct: 90  TWEEKNLNNWATQRIKELLKSVVSLDFS 114

[Close]
BLAST of Cla018668 vs. TrEMBL
Match: M5XZC7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011541mg PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-23
Identity = 59/95 (62.11%), Postives = 72/95 (75.79%), Query Frame = 1 

Query: 1  MENGAVS-------SETQQGASYTYWVREVQQDAATLPVPRKLSADNILASQASQPPTLG 60
          ME GA+S        E QQG SYTYWVR+V +D A  PVPRKLS  +IL++Q SQP TLG
Sbjct: 1  MEGGAMSLSSENRKEEEQQGTSYTYWVRQVAEDTAPPPVPRKLSPQDILSAQ-SQPSTLG 60

Query: 61 SVWNQAGTWEEKNLTIWDSDRMKELLISVASLEFS 89
          S+WN+AGTWEEKN+  W +DR+KELL+SV +LEFS
Sbjct: 61 SLWNRAGTWEEKNVNKWATDRIKELLLSVGTLEFS 94

[Close]
BLAST of Cla018668 vs. NCBI nr
Match: gi|778664023|ref|XP_011660198.1| (PREDICTED: uncharacterized protein LOC101207721 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 1.8e-35
Identity = 79/89 (88.76%), Postives = 83/89 (93.26%), Query Frame = 1 

Query: 1  MEN-GAVSSETQQGASYTYWVREVQQDAATLPVPRKLSADNILASQASQPPTLGSVWNQA 60
          MEN GAVSSETQQGASYTYWVRE +QDAA LPVPRKLSAD+ILASQASQPPTLGSVWN+A
Sbjct: 1  MENGGAVSSETQQGASYTYWVRETRQDAAPLPVPRKLSADDILASQASQPPTLGSVWNRA 60

Query: 61 GTWEEKNLTIWDSDRMKELLISVASLEFS 89
          GTWEEKNL  W SDRMKELL+SVASLEFS
Sbjct: 61 GTWEEKNLNKWASDRMKELLLSVASLEFS 89

[Close]
BLAST of Cla018668 vs. NCBI nr
Match: gi|659085867|ref|XP_008443651.1| (PREDICTED: uncharacterized protein LOC103487198 [Cucumis melo])

HSP 1 Score: 155.2 bits (391), Expect = 5.3e-35
Identity = 78/89 (87.64%), Postives = 83/89 (93.26%), Query Frame = 1 

Query: 1  MEN-GAVSSETQQGASYTYWVREVQQDAATLPVPRKLSADNILASQASQPPTLGSVWNQA 60
          MEN GAVSSETQQGASYTYWVRE +QDAA LPVPRKLSAD+ILASQASQPPTLGSVWN+A
Sbjct: 1  MENGGAVSSETQQGASYTYWVRETRQDAAPLPVPRKLSADDILASQASQPPTLGSVWNRA 60

Query: 61 GTWEEKNLTIWDSDRMKELLISVASLEFS 89
          GTWEEKNL  W +DRMKELL+SVASLEFS
Sbjct: 61 GTWEEKNLNKWATDRMKELLMSVASLEFS 89

[Close]
BLAST of Cla018668 vs. NCBI nr
Match: gi|1009129382|ref|XP_015881736.1| (PREDICTED: uncharacterized protein LOC107417632 [Ziziphus jujuba])

HSP 1 Score: 120.6 bits (301), Expect = 1.4e-24
Identity = 59/84 (70.24%), Postives = 71/84 (84.52%), Query Frame = 1 

Query: 5   AVSSETQQGASYTYWVREVQQDAATLPVPRKLSADNILASQASQPPTLGSVWNQAGTWEE 64
           A+S + Q  +SYTYWVREV +DAA LPVPRKL+  +I++SQ SQPPTLGSVWN+AGTWEE
Sbjct: 20  ALSEKGQGTSSYTYWVREVTKDAAPLPVPRKLTPHDIISSQ-SQPPTLGSVWNRAGTWEE 79

Query: 65  KNLTIWDSDRMKELLISVASLEFS 89
           KNL  W +DRMKELL+S+ SLEFS
Sbjct: 80  KNLNKWATDRMKELLLSLGSLEFS 102

[Close]
BLAST of Cla018668 vs. NCBI nr
Match: gi|802707382|ref|XP_012084304.1| (PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas])

HSP 1 Score: 119.0 bits (297), Expect = 4.2e-24
Identity = 56/77 (72.73%), Postives = 66/77 (85.71%), Query Frame = 1 

Query: 12 QGASYTYWVREVQQDAATLPVPRKLSADNILASQASQPPTLGSVWNQAGTWEEKNLTIWD 71
          QGASYTYWVRE   DAA LP+P+KLS ++++ SQ SQPPTLGSVWN+AGTWEEKNL  W 
Sbjct: 11 QGASYTYWVREATADAAPLPLPKKLSTNDLITSQ-SQPPTLGSVWNRAGTWEEKNLNKWA 70

Query: 72 SDRMKELLISVASLEFS 89
          +DR+KELL+SV SLEFS
Sbjct: 71 TDRIKELLVSVGSLEFS 86

[Close]
BLAST of Cla018668 vs. NCBI nr
Match: gi|567922256|ref|XP_006453134.1| (hypothetical protein CICLE_v10009500mg [Citrus clementina])

HSP 1 Score: 119.0 bits (297), Expect = 4.2e-24
Identity = 64/94 (68.09%), Postives = 74/94 (78.72%), Query Frame = 1 

Query: 1  MENG-----AVSS-ETQQGASYTYWVREVQQDAATLPVPRKLSADNILASQASQPPTLGS 60
          MENG     AVS  + QQGASYTYWVRE   DAA LPVP+KLS D+IL+++ SQP TLGS
Sbjct: 3  MENGGGVVSAVSEKQEQQGASYTYWVREATADAAPLPVPKKLSPDDILSNK-SQPTTLGS 62

Query: 61 VWNQAGTWEEKNLTIWDSDRMKELLISVASLEFS 89
          VWN+AGTWEEK+L  W SDR+KELL SV S+EFS
Sbjct: 63 VWNRAGTWEEKSLNKWASDRIKELLTSVGSVEFS 95

The following BLAST results are available for this feature:
BLAST of Cla018668 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M014_CUCSA1.3e-3588.76Uncharacterized protein OS=Cucumis sativus GN=Csa_1G651680 PE=4 SV=1[more]
A0A067JV65_JATCU2.9e-2472.73Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19791 PE=4 SV=1[more]
V4WI15_9ROSI2.9e-2468.09Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009500mg PE=4 SV=1[more]
A0A061GS51_THECC1.1e-2367.05Chaperone binding,ATPase activators OS=Theobroma cacao GN=TCM_039817 PE=4 SV=1[more]
M5XZC7_PRUPE1.9e-2362.11Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011541mg PE=4 SV=1[more]
BLAST of Cla018668 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778664023|ref|XP_011660198.1|1.8e-3588.76PREDICTED: uncharacterized protein LOC101207721 [Cucumis sativus][more]
gi|659085867|ref|XP_008443651.1|5.3e-3587.64PREDICTED: uncharacterized protein LOC103487198 [Cucumis melo][more]
gi|1009129382|ref|XP_015881736.1|1.4e-2470.24PREDICTED: uncharacterized protein LOC107417632 [Ziziphus jujuba][more]
gi|802707382|ref|XP_012084304.1|4.2e-2472.73PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas][more]
gi|567922256|ref|XP_006453134.1|4.2e-2468.09hypothetical protein CICLE_v10009500mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032781 positive regulation of ATPase activity
cellular_component GO:0005575 cellular_component
molecular_function GO:0001671 ATPase activator activity
molecular_function GO:0051087 chaperone binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla018668Cla018668.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR13009HEAT SHOCK PROTEIN 90 HSP90 CO-CHAPERONE AHA-1coord: 55..88
score: 6.1E-20coord: 10..29
score: 6.1
NoneNo IPR availablePANTHERPTHR13009:SF5SUBFAMILY NOT NAMEDcoord: 10..29
score: 6.1E-20coord: 55..88
score: 6.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla018668ClCG04G012860Watermelon (Charleston Gray)wcgwmB255
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla018668Cucumber (Gy14) v1cgywmB162
Cla018668Cucurbita maxima (Rimu)cmawmB207
Cla018668Melon (DHL92) v3.5.1mewmB174
Cla018668Cucumber (Chinese Long) v2cuwmB060
Cla018668Bottle gourd (USVL1VR-Ls)lsiwmB212
Cla018668Cucumber (Gy14) v2cgybwmB062
Cla018668Melon (DHL92) v3.6.1medwmB170
Cla018668Cucumber (Chinese Long) v3cucwmB068
Cla018668Watermelon (97103) v2wmwmbB291
Cla018668Wax gourdwgowmB519