Cla018663 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla018663
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Dihydroxyacetone kinase family protein (AHRD V1 -- D7KD11_ARALL); contains Interpro domain(s) IPR004006 Dak kinase
Location	Chr4 : 24130593 .. 24131149 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGACAGCAGCTATTTGTGGGGATGTTTTTGCCTCTCCTCCAGTTGATTCGATTTTGGCTGTATGTTTTCTTGGTTGTTTAATTGCATGTACTGGCTTTCTGACGTGTTATTATTTTGAATTTTAAGTAGTTAAATTTCAGGGAATTCGAGCTGTAACTGGACCTATGGGATGTCTTCTCATCGTGAAGGTCTGAAATTTCTTATCCTTCATTAACTGTGTAATGTTTTTAAATTTCTCATTTTGTTGGTCCCTTCTTTTTGCAAGTCCATTTATGTCACATTCGTTCTTTCATGTCTTTTTCTTTATACCAAGAAACAAACTTTGTTTCCTTGTATATAGAGCATTCATTACCTTTTATGCAGTTGTTTGACACATTTATTTCTCAAGGGTTTACAACTGTTAAGACTTCGCAGCCAATAGGGGATGAAATTACTAAGGGTCTATTTGGTAGGTAATTTGAAAACAAGGGATTCAACGAAATTAAGGGATTAAATGAAAACAGAGTTGTATTTCGTTTTCTGATAGTTTTTTTGTACTAGATTTAGAAATTAA

mRNA sequence

ATGCTGACAGCAGCTATTTGTGGGGATGTTTTTGCCTCTCCTCCAGTTGATTCGATTTTGGCTGGAATTCGAGCTGTAACTGGACCTATGGGATGTCTTCTCATCGTGAAGTTGTTTGACACATTTATTTCTCAAGGGTTTACAACTGTTAAGACTTCGCAGCCAATAGGGGATGAAATTACTAAGGGTCTATTTGGTAGATTTAGAAATTAA

Coding sequence (CDS)

ATGCTGACAGCAGCTATTTGTGGGGATGTTTTTGCCTCTCCTCCAGTTGATTCGATTTTGGCTGGAATTCGAGCTGTAACTGGACCTATGGGATGTCTTCTCATCGTGAAGTTGTTTGACACATTTATTTCTCAAGGGTTTACAACTGTTAAGACTTCGCAGCCAATAGGGGATGAAATTACTAAGGGTCTATTTGGTAGATTTAGAAATTAA

Protein sequence

MLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVKLFDTFISQGFTTVKTSQPIGDEITKGLFGRFRN

Homology

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BLAST of Cla018663 vs. Swiss-Prot
Match: DHBK_SOLLC (Putative 3,4-dihydroxy-2-butanone kinase OS=Solanum lycopersicum GN=DHBK PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-12
Identity = 36/37 (97.30%), Postives = 34/37 (91.89%), Query Frame = 1


Query: 1   MLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVK 38
           MLTAAICGDVFASP VDSILAGIRAVTGPMGCLLIVK
Sbjct: 77  MLTAAICGDVFASPNVDSILAGIRAVTGPMGCLLIVK 113

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BLAST of Cla018663 vs. Swiss-Prot
Match: DHAK_CITFR (Dihydroxyacetone kinase OS=Citrobacter freundii GN=dhaK PE=1 SV=3)

HSP 1 Score: 60.8 bits (146), Expect = 6.7e-09
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 1


Query: 1   MLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVK 38
           MLTAA+CGDVFASP VD++L  I+AVTG  GCLLIVK
Sbjct: 73  MLTAAVCGDVFASPSVDAVLTAIQAVTGEAGCLLIVK 109

[Close]

BLAST of Cla018663 vs. Swiss-Prot
Match: DHAK_DICDI (Probable dihydroxyacetone kinase OS=Dictyostelium discoideum GN=dhak PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.1e-06
Identity = 23/37 (62.16%), Postives = 25/37 (67.57%), Query Frame = 1


Query: 1   MLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVK 38
           MLT A+CGDVFASP    I   I++V G MGC+LIVK
Sbjct: 70  MLTGAVCGDVFASPSAKQIFMAIKSVAGKMGCILIVK 106

[Close]

BLAST of Cla018663 vs. TrEMBL
Match: A0A068TQP5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022803001 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-11
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1


Query: 1   MLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVK 38
           MLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVK
Sbjct: 77  MLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVK 113

[Close]

BLAST of Cla018663 vs. TrEMBL
Match: A0A0A0LV99_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G030620 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-11
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1


Query: 1   MLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVK 38
           MLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVK
Sbjct: 77  MLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVK 113

[Close]

BLAST of Cla018663 vs. TrEMBL
Match: A0A0K9PN96_ZOSMR (Glycerone kinase, Triokinase OS=Zostera marina GN=ZOSMA_19G00330 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-11
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 1


Query: 1   MLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVK 38
           MLTAAICGDVFASPPVDSILAGIRAVTGPMGCLL+VK
Sbjct: 77  MLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLVVK 113

[Close]

BLAST of Cla018663 vs. TrEMBL
Match: M5WFC0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003341mg PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-11
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 1


Query: 1   MLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVK 38
           MLTAAICGDVFASPPVDS+LAGIRAVTGPMGCLLIVK
Sbjct: 67  MLTAAICGDVFASPPVDSVLAGIRAVTGPMGCLLIVK 103

[Close]

BLAST of Cla018663 vs. TrEMBL
Match: A0A166BC96_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_011388 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.9e-11
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 1


Query: 1   MLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVK 38
           MLTAAICGDVFASPPVD+ILAGIRAVTGPMGCLLIVK
Sbjct: 66  MLTAAICGDVFASPPVDAILAGIRAVTGPMGCLLIVK 102

[Close]

BLAST of Cla018663 vs. NCBI nr
Match: gi|470127061|ref|XP_004299497.1| (PREDICTED: LOW QUALITY PROTEIN: putative 3,4-dihydroxy-2-butanone kinase [Fragaria vesca subsp. vesca])

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-11
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1


Query: 1   MLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVK 38
           MLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVK
Sbjct: 77  MLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVK 113

[Close]

BLAST of Cla018663 vs. NCBI nr
Match: gi|1012175583|ref|XP_015966847.1| (PREDICTED: putative 3,4-dihydroxy-2-butanone kinase isoform X2 [Arachis duranensis])

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-11
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1


Query: 1   MLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVK 38
           MLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVK
Sbjct: 77  MLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVK 113

[Close]

BLAST of Cla018663 vs. NCBI nr
Match: gi|659066249|ref|XP_008451799.1| (PREDICTED: putative 3,4-dihydroxy-2-butanone kinase isoform X2 [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-11
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1


Query: 1   MLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVK 38
           MLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVK
Sbjct: 77  MLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVK 113

[Close]

BLAST of Cla018663 vs. NCBI nr
Match: gi|449439207|ref|XP_004137378.1| (PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-11
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1


Query: 1   MLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVK 38
           MLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVK
Sbjct: 77  MLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVK 113

[Close]

BLAST of Cla018663 vs. NCBI nr
Match: gi|1012175579|ref|XP_015966846.1| (PREDICTED: putative 3,4-dihydroxy-2-butanone kinase isoform X1 [Arachis duranensis])

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-11
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1


Query: 1   MLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVK 38
           MLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVK
Sbjct: 77  MLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVK 113

The following BLAST results are available for this feature:

BLAST of Cla018663 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DHBK_SOLLC	1.3e-12	97.30	Putative 3,4-dihydroxy-2-butanone kinase OS=Solanum lycopersicum GN=DHBK PE=2 SV...	[more]
DHAK_CITFR	6.7e-09	75.68	Dihydroxyacetone kinase OS=Citrobacter freundii GN=dhaK PE=1 SV=3	[more]
DHAK_DICDI	3.1e-06	62.16	Probable dihydroxyacetone kinase OS=Dictyostelium discoideum GN=dhak PE=3 SV=1	[more]

BLAST of Cla018663 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A068TQP5_COFCA	1.3e-11	100.00	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022803001 PE=4 SV=1	[more]
A0A0A0LV99_CUCSA	1.3e-11	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G030620 PE=4 SV=1	[more]
A0A0K9PN96_ZOSMR	1.7e-11	97.30	Glycerone kinase, Triokinase OS=Zostera marina GN=ZOSMA_19G00330 PE=4 SV=1	[more]
M5WFC0_PRUPE	1.7e-11	97.30	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003341mg PE=4 SV=1	[more]
A0A166BC96_DAUCA	2.9e-11	97.30	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_011388 PE=4 SV=1	[more]

BLAST of Cla018663 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|470127061\|ref\|XP_004299497.1\|	1.9e-11	100.00	PREDICTED: LOW QUALITY PROTEIN: putative 3,4-dihydroxy-2-butanone kinase [Fragar...	[more]
gi\|1012175583\|ref\|XP_015966847.1\|	1.9e-11	100.00	PREDICTED: putative 3,4-dihydroxy-2-butanone kinase isoform X2 [Arachis duranens...	[more]
gi\|659066249\|ref\|XP_008451799.1\|	1.9e-11	100.00	PREDICTED: putative 3,4-dihydroxy-2-butanone kinase isoform X2 [Cucumis melo]	[more]
gi\|449439207\|ref\|XP_004137378.1\|	1.9e-11	100.00	PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Cucumis sativus]	[more]
gi\|1012175579\|ref\|XP_015966846.1\|	1.9e-11	100.00	PREDICTED: putative 3,4-dihydroxy-2-butanone kinase isoform X1 [Arachis duranens...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004006	DhaK_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0004371	glycerone kinase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006071	glycerol metabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046486	glycerolipid metabolic process
biological_process	GO:0006071	glycerol metabolic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0019852	L-ascorbic acid metabolic process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004371	glycerone kinase activity
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0008447	L-ascorbate oxidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla018663	Cla018663.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004006	DhaK domain	PFAM	PF02733	Dak1	coord: 1..37 score: 4.5
IPR004006	DhaK domain	PROFILE	PS51481	DHAK	coord: 1..70 score: 17
None	No IPR available	GENE3D	G3DSA:3.40.50.10440		coord: 1..38 score: 8.7
None	No IPR available	PANTHER	PTHR28629	FAMILY NOT NAMED	coord: 1..37 score: 1.2
None	No IPR available	PANTHER	PTHR28629:SF4	BIFUNCTIONAL ATP-DEPENDENT DIHYDROXYACETONE KINASE/FAD-AMP LYASE (CYCLIZING)	coord: 1..37 score: 1.2
None	No IPR available	unknown	SSF82549	DAK1/DegV-like	coord: 1..37 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla018663	ClCG04G012780	Watermelon (Charleston Gray)	wcgwmB255
Cla018663	CmoCh13G012100	Cucurbita moschata (Rifu)	cmowmB195

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla018663	Silver-seed gourd	carwmB0388
Cla018663	Silver-seed gourd	carwmB0519
Cla018663	Cucumber (Chinese Long) v3	cucwmB068
Cla018663	Cucumber (Chinese Long) v3	cucwmB070
Cla018663	Watermelon (97103) v2	wmwmbB291
Cla018663	Wax gourd	wgowmB519
Cla018663	Cucumber (Gy14) v1	cgywmB162
Cla018663	Cucumber (Gy14) v1	cgywmB163
Cla018663	Cucurbita maxima (Rimu)	cmawmB207
Cla018663	Cucurbita maxima (Rimu)	cmawmB451
Cla018663	Cucurbita moschata (Rifu)	cmowmB446
Cla018663	Melon (DHL92) v3.5.1	mewmB174
Cla018663	Cucumber (Chinese Long) v2	cuwmB060
Cla018663	Cucumber (Chinese Long) v2	cuwmB062
Cla018663	Cucurbita pepo (Zucchini)	cpewmB524
Cla018663	Cucurbita pepo (Zucchini)	cpewmB578
Cla018663	Bottle gourd (USVL1VR-Ls)	lsiwmB212
Cla018663	Cucumber (Gy14) v2	cgybwmB062
Cla018663	Melon (DHL92) v3.6.1	medwmB170