Cla018655 (gene) Watermelon (97103) v1

NameCla018655
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
LocationChr4 : 24028343 .. 24028576 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTTGGGTTACGCGAAGATGAAGTATGTTGGTGAGGCTGTGGGTTTGTTTAGAGAGATGATGGAAGCTGGGTTTGAGCCCGATGACATGATCTTAGTTATGGAAGTTGGGTTTGAGCTGGATGAGATGATGGAAACTGAGTTTATGGCTGACTTGTGTCTTGGGGGCGTGTGGAGAGCTGGGGGATTTGAGACTCGGCACTTGGGTGGGAGCGTTGGTGATGGAGAATGA

mRNA sequence

ATGATGTTGGGTTACGCGAAGATGAAGTATGTTGGTGAGGCTGTGGGTTTGTTTAGAGAGATGATGGAAGCTGGGTTTGAGCCCGATGACATGATCTTAGTTATGGAAGTTGGGTTTGAGCTGGATGAGATGATGGAAACTGAGTTTATGGCTGACTTGTGTCTTGGGGGCGTGTGGAGAGCTGGGGGATTTGAGACTCGGCACTTGGGTGGGAGCGTTGGTGATGGAGAATGA

Coding sequence (CDS)

ATGATGTTGGGTTACGCGAAGATGAAGTATGTTGGTGAGGCTGTGGGTTTGTTTAGAGAGATGATGGAAGCTGGGTTTGAGCCCGATGACATGATCTTAGTTATGGAAGTTGGGTTTGAGCTGGATGAGATGATGGAAACTGAGTTTATGGCTGACTTGTGTCTTGGGGGCGTGTGGAGAGCTGGGGGATTTGAGACTCGGCACTTGGGTGGGAGCGTTGGTGATGGAGAATGA

Protein sequence

MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVGFELDEMMETEFMADLCLGGVWRAGGFETRHLGGSVGDGE
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla018655Cla018655.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 1..29
score: 3.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 1..28
score: 9

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla018655Cla97C04G079710Watermelon (97103) v2wmwmbB291
The following gene(s) are paralogous to this gene:

None