Cla018527 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla018527
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr4 : 22989407 .. 22989715 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCCGCCTCATCGCCGCCATTGTTACCTGACTTGCAGCAAACGCCGGCCTCCGACAGCAGCGGCGCCTGGCAGTCCTCTAGTTCTGTTGCGCCGTTCTTTGTGGTGATCTCTGTTTTAACTCTGCTTTCGATTATGTCTTGCTTTCTGGGTCGAATTTGCAGCCGCAGATATGAAGAAACGCCATCACAAGGAAGAAATTTTTTGGGATTTTTTAAAAGGAAGTTGCAGAGGCCTTGTGTTGAAGACGTTGAGATCGGTGTAAAAGGAAGAATGGAATTGGGTAATCGGAACTCTTCTTCTTAG

mRNA sequence

ATGGCCTCCGCCTCATCGCCGCCATTGTTACCTGACTTGCAGCAAACGCCGGCCTCCGACAGCAGCGGCGCCTGGCAGTCCTCTAGTTCTGTTGCGCCGTTCTTTGTGGTGATCTCTGTTTTAACTCTGCTTTCGATTATGTCTTGCTTTCTGGGTCGAATTTGCAGCCGCAGATATGAAGAAACGCCATCACAAGGAAGAAATTTTTTGGGATTTTTTAAAAGGAAGTTGCAGAGGCCTTGTGTTGAAGACGTTGAGATCGGTGTAAAAGGAAGAATGGAATTGGGTAATCGGAACTCTTCTTCTTAG

Coding sequence (CDS)

ATGGCCTCCGCCTCATCGCCGCCATTGTTACCTGACTTGCAGCAAACGCCGGCCTCCGACAGCAGCGGCGCCTGGCAGTCCTCTAGTTCTGTTGCGCCGTTCTTTGTGGTGATCTCTGTTTTAACTCTGCTTTCGATTATGTCTTGCTTTCTGGGTCGAATTTGCAGCCGCAGATATGAAGAAACGCCATCACAAGGAAGAAATTTTTTGGGATTTTTTAAAAGGAAGTTGCAGAGGCCTTGTGTTGAAGACGTTGAGATCGGTGTAAAAGGAAGAATGGAATTGGGTAATCGGAACTCTTCTTCTTAG

Protein sequence

MASASSPPLLPDLQQTPASDSSGAWQSSSSVAPFFVVISVLTLLSIMSCFLGRICSRRYEETPSQGRNFLGFFKRKLQRPCVEDVEIGVKGRMELGNRNSSS

Homology

[Close]

BLAST of Cla018527 vs. TrEMBL
Match: A0A072VIN4_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_2g056070 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.7e-13
Identity = 48/98 (48.98%), Postives = 64/98 (65.31%), Query Frame = 1


Query: 1  MASASSPPLLPDLQQ----TPASDSSGAWQSSSSVAPFFVVISVLTLLSIMSCFLGRICS 60
          MASA+S  LL   QQ    T +S SS AW+SS S+ PFF VI VLT+L+++SC+L R+C+
Sbjct: 1  MASAASSALLQPQQQQSGETISSPSSSAWKSSGSIGPFFAVIIVLTILAVLSCYLTRMCN 60

Query: 61 RRYEETPSQ---GRNFLGFFKRKLQRPCVEDVEIGVKG 92
          RR E TP +   GR   G+ KR+ +R    DVE+G  G
Sbjct: 61 RR-EPTPLESIKGRGCFGWVKRRCRRCMSRDVEVGGVG 97

[Close]

BLAST of Cla018527 vs. TrEMBL
Match: A0A067J8N7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05831 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.1e-10
Identity = 44/102 (43.14%), Postives = 65/102 (63.73%), Query Frame = 1


Query: 7   PPLLPDLQQTPASDSSGAWQSSSSVAPFFVVISVLTLLSIMSCFLGRICSRRYEETPS-- 66
           PP+  +++Q PAS SS +W SS S+ PFF VISVL +L+I+SC LGR+CSRR    P   
Sbjct: 14  PPMAGEIEQ-PASSSS-SWHSSGSIGPFFGVISVLAVLAILSCILGRVCSRRAVAPPPPQ 73

Query: 67  -----QGRNFLGFFKRKLQRPC-VEDVEIGVKGR-MELGNRN 100
                + R +LG++ ++  R C   DVE+G   + M LG+++
Sbjct: 74  LDNRFKHRGYLGWWMKRKNRWCRGGDVEVGANNKVMALGDQD 113

[Close]

BLAST of Cla018527 vs. TrEMBL
Match: A0A0S3R7M9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G448200 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 8.8e-09
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 1


Query: 14 QQTPASDSSGAWQSSSSVAPFFVVISVLTLLSIMSCFLGRICSRRYEETPSQ---GRNFL 73
          +  P++  S AW+SS SV PFF V+SVL +L+++SC+LGR  +RR  +TP +   GR F 
Sbjct: 20 EAVPSTTGSSAWKSSGSVGPFFAVMSVLVILAVLSCYLGRKWNRR-PKTPLESIRGRGFS 79

Query: 74 GFFKRKLQRPCVEDVEIGVKG 92
          G+ KR  +     D+E+G  G
Sbjct: 80 GWLKRVCRERIGNDIEVGGVG 99

[Close]

BLAST of Cla018527 vs. TrEMBL
Match: A0A0L9TSI9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g268500 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 8.8e-09
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 1


Query: 14 QQTPASDSSGAWQSSSSVAPFFVVISVLTLLSIMSCFLGRICSRRYEETPSQ---GRNFL 73
          +  P++  S AW+SS SV PFF V+SVL +L+++SC+LGR  +RR  +TP +   GR F 
Sbjct: 20 EAVPSTTGSSAWKSSGSVGPFFAVMSVLVILAVLSCYLGRKWNRR-PKTPLESIRGRGFS 79

Query: 74 GFFKRKLQRPCVEDVEIGVKG 92
          G+ KR  +     D+E+G  G
Sbjct: 80 GWLKRVCRERIGNDIEVGGVG 99

[Close]

BLAST of Cla018527 vs. TrEMBL
Match: A0A151SPJ9_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_003003 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-08
Identity = 35/83 (42.17%), Postives = 53/83 (63.86%), Query Frame = 1


Query: 12 DLQQTPASDSSGAWQSSSSVAPFFVVISVLTLLSIMSCFLGRICSRRYEETPSQ---GRN 71
          D +  P + ++ AW+SS SV PFF V+ VL +L+++SC+LGR  + R  +TP +   GR 
Sbjct: 15 DPEAVPITSTTSAWKSSGSVGPFFAVMCVLIILAVLSCYLGRKWNPR-PKTPLESIRGRG 74

Query: 72 FLGFFKRKLQRPCVEDVEIGVKG 92
          FLG+ KR  +    +DVE+G  G
Sbjct: 75 FLGWLKRVFRERIAKDVEVGGVG 96

[Close]

BLAST of Cla018527 vs. NCBI nr
Match: gi|922391140|ref|XP_013463985.1| (transmembrane protein, putative [Medicago truncatula])

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 48/98 (48.98%), Postives = 64/98 (65.31%), Query Frame = 1


Query: 1  MASASSPPLLPDLQQ----TPASDSSGAWQSSSSVAPFFVVISVLTLLSIMSCFLGRICS 60
          MASA+S  LL   QQ    T +S SS AW+SS S+ PFF VI VLT+L+++SC+L R+C+
Sbjct: 1  MASAASSALLQPQQQQSGETISSPSSSAWKSSGSIGPFFAVIIVLTILAVLSCYLTRMCN 60

Query: 61 RRYEETPSQ---GRNFLGFFKRKLQRPCVEDVEIGVKG 92
          RR E TP +   GR   G+ KR+ +R    DVE+G  G
Sbjct: 61 RR-EPTPLESIKGRGCFGWVKRRCRRCMSRDVEVGGVG 97

[Close]

BLAST of Cla018527 vs. NCBI nr
Match: gi|828291560|ref|XP_012575091.1| (PREDICTED: uncharacterized protein LOC101512774 [Cicer arietinum])

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 47/102 (46.08%), Postives = 65/102 (63.73%), Query Frame = 1


Query: 1   MASASSPPLLPDLQQ--------TPASDSSGAWQSSSSVAPFFVVISVLTLLSIMSCFLG 60
           MA+A+S  LL   QQ        + +S SS AWQSS S+APFF VI +LT+L+++SC+L 
Sbjct: 1   MATAASSSLLQPQQQQANSGEVVSTSSSSSSAWQSSGSIAPFFAVIIILTILAVLSCYLS 60

Query: 61  RICSRRYEETPSQ---GRNFLGFFKRKLQRPCVEDVEIGVKG 92
           R+C+RR E TP +   GR  LG+ KR+ +     DVE+G  G
Sbjct: 61  RMCNRR-ELTPLESIKGRGCLGWLKRRCRECMCRDVEVGGVG 101

[Close]

BLAST of Cla018527 vs. NCBI nr
Match: gi|802797083|ref|XP_012092928.1| (PREDICTED: uncharacterized protein LOC105650625 [Jatropha curcas])

HSP 1 Score: 73.2 bits (178), Expect = 3.0e-10
Identity = 44/102 (43.14%), Postives = 65/102 (63.73%), Query Frame = 1


Query: 7   PPLLPDLQQTPASDSSGAWQSSSSVAPFFVVISVLTLLSIMSCFLGRICSRRYEETPS-- 66
           PP+  +++Q PAS SS +W SS S+ PFF VISVL +L+I+SC LGR+CSRR    P   
Sbjct: 14  PPMAGEIEQ-PASSSS-SWHSSGSIGPFFGVISVLAVLAILSCILGRVCSRRAVAPPPPQ 73

Query: 67  -----QGRNFLGFFKRKLQRPC-VEDVEIGVKGR-MELGNRN 100
                + R +LG++ ++  R C   DVE+G   + M LG+++
Sbjct: 74  LDNRFKHRGYLGWWMKRKNRWCRGGDVEVGANNKVMALGDQD 113

[Close]

BLAST of Cla018527 vs. NCBI nr
Match: gi|951006493|ref|XP_014508487.1| (PREDICTED: uncharacterized protein LOC106768034 [Vigna radiata var. radiata])

HSP 1 Score: 68.9 bits (167), Expect = 5.7e-09
Identity = 36/81 (44.44%), Postives = 54/81 (66.67%), Query Frame = 1


Query: 14 QQTPASDSSGAWQSSSSVAPFFVVISVLTLLSIMSCFLGRICSRRYEETPSQ---GRNFL 73
          +  P++ +S AW+SS SVAPFF V+SVL +L+++SC+LGR  +RR  +TP +   GR F 
Sbjct: 20 EAVPSTTASTAWKSSGSVAPFFAVMSVLVILAVLSCYLGRKWNRR-PKTPLESIRGRGFS 79

Query: 74 GFFKRKLQRPCVEDVEIGVKG 92
          G+ KR  +     D+E+G  G
Sbjct: 80 GWLKRVCRERIGNDIEVGGVG 99

[Close]

BLAST of Cla018527 vs. NCBI nr
Match: gi|920689146|gb|KOM33129.1| (hypothetical protein LR48_Vigan01g268500 [Vigna angularis])

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-08
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 1


Query: 14 QQTPASDSSGAWQSSSSVAPFFVVISVLTLLSIMSCFLGRICSRRYEETPSQ---GRNFL 73
          +  P++  S AW+SS SV PFF V+SVL +L+++SC+LGR  +RR  +TP +   GR F 
Sbjct: 20 EAVPSTTGSSAWKSSGSVGPFFAVMSVLVILAVLSCYLGRKWNRR-PKTPLESIRGRGFS 79

Query: 74 GFFKRKLQRPCVEDVEIGVKG 92
          G+ KR  +     D+E+G  G
Sbjct: 80 GWLKRVCRERIGNDIEVGGVG 99

The following BLAST results are available for this feature:

BLAST of Cla018527 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A072VIN4_MEDTR	7.7e-13	48.98	Transmembrane protein, putative OS=Medicago truncatula GN=MTR_2g056070 PE=4 SV=1	[more]
A0A067J8N7_JATCU	2.1e-10	43.14	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05831 PE=4 SV=1	[more]
A0A0S3R7M9_PHAAN	8.8e-09	43.21	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G448200 PE=...	[more]
A0A0L9TSI9_PHAAN	8.8e-09	43.21	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g268500 PE=4 SV=1	[more]
A0A151SPJ9_CAJCA	1.2e-08	42.17	Uncharacterized protein OS=Cajanus cajan GN=KK1_003003 PE=4 SV=1	[more]

BLAST of Cla018527 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|922391140\|ref\|XP_013463985.1\|	1.1e-12	48.98	transmembrane protein, putative [Medicago truncatula]	[more]
gi\|828291560\|ref\|XP_012575091.1\|	1.1e-12	46.08	PREDICTED: uncharacterized protein LOC101512774 [Cicer arietinum]	[more]
gi\|802797083\|ref\|XP_012092928.1\|	3.0e-10	43.14	PREDICTED: uncharacterized protein LOC105650625 [Jatropha curcas]	[more]
gi\|951006493\|ref\|XP_014508487.1\|	5.7e-09	44.44	PREDICTED: uncharacterized protein LOC106768034 [Vigna radiata var. radiata]	[more]
gi\|920689146\|gb\|KOM33129.1\|	1.3e-08	43.21	hypothetical protein LR48_Vigan01g268500 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla018527	Cla018527.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33429	FAMILY NOT NAMED	coord: 24..94 score: 3.8
None	No IPR available	PANTHER	PTHR33429:SF6	SUBFAMILY NOT NAMED	coord: 24..94 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla018527	Cla97C04G078260	Watermelon (97103) v2	wmwmbB291
Cla018527	ClCG04G011400	Watermelon (Charleston Gray)	wcgwmB255
Cla018527	Lsi02G001540	Bottle gourd (USVL1VR-Ls)	lsiwmB212

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla018527	Melon (DHL92) v3.6.1	medwmB170
Cla018527	Melon (DHL92) v3.6.1	medwmB274
Cla018527	Silver-seed gourd	carwmB0387
Cla018527	Silver-seed gourd	carwmB0459
Cla018527	Silver-seed gourd	carwmB0509
Cla018527	Silver-seed gourd	carwmB0592
Cla018527	Cucumber (Chinese Long) v3	cucwmB070
Cla018527	Cucumber (Chinese Long) v3	cucwmB071
Cla018527	Watermelon (97103) v2	wmwmbB301
Cla018527	Wax gourd	wgowmB516
Cla018527	Wax gourd	wgowmB670
Cla018527	Watermelon (97103) v1	wmwmB156
Cla018527	Cucumber (Gy14) v1	cgywmB163
Cla018527	Cucumber (Gy14) v1	cgywmB388
Cla018527	Cucurbita maxima (Rimu)	cmawmB062
Cla018527	Cucurbita maxima (Rimu)	cmawmB120
Cla018527	Cucurbita maxima (Rimu)	cmawmB206
Cla018527	Cucurbita maxima (Rimu)	cmawmB396
Cla018527	Cucurbita maxima (Rimu)	cmawmB394
Cla018527	Cucurbita moschata (Rifu)	cmowmB055
Cla018527	Cucurbita moschata (Rifu)	cmowmB108
Cla018527	Cucurbita moschata (Rifu)	cmowmB194
Cla018527	Cucurbita moschata (Rifu)	cmowmB387
Cla018527	Cucurbita moschata (Rifu)	cmowmB389
Cla018527	Melon (DHL92) v3.5.1	mewmB174
Cla018527	Melon (DHL92) v3.5.1	mewmB281
Cla018527	Watermelon (Charleston Gray)	wcgwmB339
Cla018527	Cucumber (Chinese Long) v2	cuwmB062
Cla018527	Cucumber (Chinese Long) v2	cuwmB063
Cla018527	Cucurbita pepo (Zucchini)	cpewmB049
Cla018527	Cucurbita pepo (Zucchini)	cpewmB367
Cla018527	Cucurbita pepo (Zucchini)	cpewmB523
Cla018527	Cucurbita pepo (Zucchini)	cpewmB664
Cla018527	Bottle gourd (USVL1VR-Ls)	lsiwmB408
Cla018527	Cucumber (Gy14) v2	cgybwmB064
Cla018527	Cucumber (Gy14) v2	cgybwmB065