Cla018511 (gene) Watermelon (97103) v1

Overview
NameCla018511
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr4 : 22819868 .. 22820318 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCTTCCATTACTGCGTCGATGTCTACTTCCTCGTCTCCGACCACCGATCAGATGCCCCTAGATGACAAGAAGCCTGCGCCGCCGCCGAAGCCATGGCTCATCGTGGGCCTCGGGAATCCCGGGAAGAAGTACGATCGTACGCGCCATAATGTCCGTATGGTCCTATCTCTGCTAATTCGGAGTTTCTCTTATCATTTATGTTTTGTTCATCTTTGCTTTGAGCGCAATTGCTTTTCCAGAAATTAGCCTCTGTTTCGTTGATAACTATGTCGAGCGATAGAAGATTATGCCTTATTTTCTGTTTGATTAATTAAGTGTAGGAAACCCCTGGGGGAAGTTTCCCGAGCATGAACTTACGATTATCTCGGGGAATTTAGGGTTTAATGTTGTTTACGAAGGTTATCTGGATGTCCTTTATGAAGACGAATTGAAACACTGGCAGTAG

mRNA sequence

ATGTCTTCTTCCATTACTGCGTCGATGTCTACTTCCTCGTCTCCGACCACCGATCAGATGCCCCTAGATGACAAGAAGCCTGCGCCGCCGCCGAAGCCATGGCTCATCGTGGGCCTCGGGAATCCCGGGAAGAAGTACGATCGAAACCCCTGGGGGAAGTTTCCCGAGCATGAACTTACGATTATCTCGGGGAATTTAGGGTTTAATGTTGTTTACGAAGGTTATCTGGATGTCCTTTATGAAGACGAATTGAAACACTGGCAGTAG

Coding sequence (CDS)

ATGTCTTCTTCCATTACTGCGTCGATGTCTACTTCCTCGTCTCCGACCACCGATCAGATGCCCCTAGATGACAAGAAGCCTGCGCCGCCGCCGAAGCCATGGCTCATCGTGGGCCTCGGGAATCCCGGGAAGAAGTACGATCGAAACCCCTGGGGGAAGTTTCCCGAGCATGAACTTACGATTATCTCGGGGAATTTAGGGTTTAATGTTGTTTACGAAGGTTATCTGGATGTCCTTTATGAAGACGAATTGAAACACTGGCAGTAG

Protein sequence

MSSSITASMSTSSSPTTDQMPLDDKKPAPPPKPWLIVGLGNPGKKYDRNPWGKFPEHELTIISGNLGFNVVYEGYLDVLYEDELKHWQ
Homology
[Close]
BLAST of Cla018511 vs. TrEMBL
Match: A0A0A0LVQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042230 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.7e-16
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 1 

Query: 1  MSSSITASMSTSSSPTTDQMPLDDKKPAPPPKPWLIVGLGNPGKKYDR 49
          ++SSITASMSTSSSPTT+Q  LDDKKPAPPPKPWLIVGLGNPGKKYDR
Sbjct: 48 ITSSITASMSTSSSPTTEQPALDDKKPAPPPKPWLIVGLGNPGKKYDR 95

[Close]
BLAST of Cla018511 vs. NCBI nr
Match: gi|659066706|ref|XP_008457243.1| (PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 8.3e-17
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 1 

Query: 1  MSSSITASMSTSSSPTTDQMPLDDKKPAPPPKPWLIVGLGNPGKKYDR 49
          ++SSITASMSTSSSPTTDQ  LDDKKPAPPPKPWLIVGLGNPGKKYDR
Sbjct: 48 ITSSITASMSTSSSPTTDQPALDDKKPAPPPKPWLIVGLGNPGKKYDR 95

[Close]
BLAST of Cla018511 vs. NCBI nr
Match: gi|449439389|ref|XP_004137468.1| (PREDICTED: peptidyl-tRNA hydrolase, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 2.4e-16
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 1 

Query: 1  MSSSITASMSTSSSPTTDQMPLDDKKPAPPPKPWLIVGLGNPGKKYDR 49
          ++SSITASMSTSSSPTT+Q  LDDKKPAPPPKPWLIVGLGNPGKKYDR
Sbjct: 48 ITSSITASMSTSSSPTTEQPALDDKKPAPPPKPWLIVGLGNPGKKYDR 95

The following BLAST results are available for this feature:
BLAST of Cla018511 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVQ7_CUCSA1.7e-1689.58Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042230 PE=3 SV=1[more]
BLAST of Cla018511 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659066706|ref|XP_008457243.1|8.3e-1791.67PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Cucumis melo][more]
gi|449439389|ref|XP_004137468.1|2.4e-1689.58PREDICTED: peptidyl-tRNA hydrolase, chloroplastic isoform X1 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001328Pept_tRNA_hydro
Vocabulary: Molecular Function
TermDefinition
GO:0004045aminoacyl-tRNA hydrolase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004045 aminoacyl-tRNA hydrolase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla018511Cla018511.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001328Peptidyl-tRNA hydrolaseGENE3DG3DSA:3.40.50.1470coord: 31..48
score: 1.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla018511Carg22756Silver-seed gourdcarwmB0509
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla018511Cucurbita pepo (Zucchini)cpewmB049
Cla018511Cucurbita pepo (Zucchini)cpewmB052
Cla018511Cucurbita pepo (Zucchini)cpewmB367
Cla018511Cucurbita pepo (Zucchini)cpewmB523
Cla018511Cucurbita pepo (Zucchini)cpewmB664
Cla018511Bottle gourd (USVL1VR-Ls)lsiwmB212
Cla018511Bottle gourd (USVL1VR-Ls)lsiwmB329
Cla018511Bottle gourd (USVL1VR-Ls)lsiwmB408
Cla018511Cucumber (Gy14) v2cgybwmB064
Cla018511Cucumber (Gy14) v2cgybwmB065
Cla018511Cucumber (Gy14) v2cgybwmB398
Cla018511Melon (DHL92) v3.6.1medwmB067
Cla018511Melon (DHL92) v3.6.1medwmB170
Cla018511Melon (DHL92) v3.6.1medwmB274
Cla018511Silver-seed gourdcarwmB0387
Cla018511Silver-seed gourdcarwmB0459
Cla018511Silver-seed gourdcarwmB0592
Cla018511Cucumber (Chinese Long) v3cucwmB070
Cla018511Cucumber (Chinese Long) v3cucwmB071
Cla018511Cucumber (Chinese Long) v3cucwmB452
Cla018511Watermelon (97103) v2wmwmbB291
Cla018511Watermelon (97103) v2wmwmbB300
Cla018511Watermelon (97103) v2wmwmbB301
Cla018511Wax gourdwgowmB232
Cla018511Wax gourdwgowmB518
Cla018511Wax gourdwgowmB560
Cla018511Watermelon (97103) v1wmwmB130
Cla018511Watermelon (97103) v1wmwmB156
Cla018511Cucumber (Gy14) v1cgywmB163
Cla018511Cucumber (Gy14) v1cgywmB388
Cla018511Cucumber (Gy14) v1cgywmB529
Cla018511Cucurbita maxima (Rimu)cmawmB062
Cla018511Cucurbita maxima (Rimu)cmawmB120
Cla018511Cucurbita maxima (Rimu)cmawmB206
Cla018511Cucurbita maxima (Rimu)cmawmB396
Cla018511Cucurbita maxima (Rimu)cmawmB395
Cla018511Cucurbita moschata (Rifu)cmowmB055
Cla018511Cucurbita moschata (Rifu)cmowmB108
Cla018511Cucurbita moschata (Rifu)cmowmB194
Cla018511Cucurbita moschata (Rifu)cmowmB388
Cla018511Cucurbita moschata (Rifu)cmowmB389
Cla018511Melon (DHL92) v3.5.1mewmB068
Cla018511Melon (DHL92) v3.5.1mewmB174
Cla018511Melon (DHL92) v3.5.1mewmB281
Cla018511Watermelon (Charleston Gray)wcgwmB255
Cla018511Watermelon (Charleston Gray)wcgwmB304
Cla018511Watermelon (Charleston Gray)wcgwmB339
Cla018511Cucumber (Chinese Long) v2cuwmB062
Cla018511Cucumber (Chinese Long) v2cuwmB063
Cla018511Cucumber (Chinese Long) v2cuwmB425