Cla018453 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla018453
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Protection of telomeres 1 protein (AHRD V1 ***- B7T1J5_POPTR); contains Interpro domain(s) IPR016027 Nucleic acid-binding, OB-fold-like
Location	Chr4 : 22195691 .. 22196054 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGCAGCGACGACTATAAATTCATGGAGATTAGAGATGCTATTGCCTCCATAAACCAGAAGGTTAACCTTATTGGCGTCATCATCGAGTTCGGTTTCCCCAGGCGAACGAAGGGCACTGGTATTTCTCCTCTCTCTTTCCTCTATTCCATGCCATGCAAATGGATTTTGTTTCTGGAATTCACTCCTTTGAAATTGTTAGCAGTTTCATTTCTTACTCTGAATCATGTTTTTTAGTAAAATCCGAGCATCTCGTAGTTTAATATCATCGATCTCATCGTTTTGCGTGTAACAAGTTACTGGCAATGATGATACAAAGGCCGGACTTACGGCTGCTTCCATTTGGACGGTAGTAGATTGA

mRNA sequence

ATGGGGAGCAGCGACGACTATAAATTCATGGAGATTAGAGATGCTATTGCCTCCATAAACCAGAAGGTTAACCTTATTGGCGTCATCATCGAGTTCGGTTTCCCCAGGCGAACGAAGGGCACTGTTACTGGCAATGATGATACAAAGGCCGGACTTACGGCTGCTTCCATTTGGACGGTAGTAGATTGA

Coding sequence (CDS)

ATGGGGAGCAGCGACGACTATAAATTCATGGAGATTAGAGATGCTATTGCCTCCATAAACCAGAAGGTTAACCTTATTGGCGTCATCATCGAGTTCGGTTTCCCCAGGCGAACGAAGGGCACTGTTACTGGCAATGATGATACAAAGGCCGGACTTACGGCTGCTTCCATTTGGACGGTAGTAGATTGA

Protein sequence

MGSSDDYKFMEIRDAIASINQKVNLIGVIIEFGFPRRTKGTVTGNDDTKAGLTAASIWTVVD

Homology

[Close]

BLAST of Cla018453 vs. TrEMBL
Match: A0A0A0LTS7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042840 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-11
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 1


Query: 2  GSSDDYKFMEIRDAIASINQKVNLIGVIIEFGFPRRTKGT-------VTGNDDTKAGLTA 55
          G SDDY+FMEIRDAIASINQKVN++GVIIEF FPRRTKGT       +      K G+TA
Sbjct: 3  GRSDDYRFMEIRDAIASINQKVNIVGVIIEFSFPRRTKGTDCFCAVKIVDQSHHKPGITA 62

[Close]

BLAST of Cla018453 vs. TrEMBL
Match: W9RZQ3_9ROSA (Protection of telomeres protein 1 OS=Morus notabilis GN=L484_025176 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.2e-10
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 1


Query: 1  MGSSDDYKFMEIRDAIASINQKVNLIGVIIEFGFPRRTKGT 42
          MG  DDYKF+EIRDAIASINQKV+LIGVIIE GFP++TKGT
Sbjct: 1  MGERDDYKFLEIRDAIASINQKVSLIGVIIECGFPKKTKGT 41

[Close]

BLAST of Cla018453 vs. TrEMBL
Match: B9I2E1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s04380g PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.0e-09
Identity = 29/41 (70.73%), Postives = 37/41 (90.24%), Query Frame = 1


Query: 1  MGSSDDYKFMEIRDAIASINQKVNLIGVIIEFGFPRRTKGT 42
          MG  DDYKF++I+DAI++INQKVNLIGV+IE GFP+ T+GT
Sbjct: 1  MGERDDYKFLKIKDAISAINQKVNLIGVVIELGFPKTTRGT 41

[Close]

BLAST of Cla018453 vs. TrEMBL
Match: B7T1J5_POPTR (Protection of telomeres 1 protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.0e-09
Identity = 29/41 (70.73%), Postives = 37/41 (90.24%), Query Frame = 1


Query: 1  MGSSDDYKFMEIRDAIASINQKVNLIGVIIEFGFPRRTKGT 42
          MG  DDYKF++I+DAI++INQKVNLIGV+IE GFP+ T+GT
Sbjct: 1  MGERDDYKFLKIKDAISAINQKVNLIGVVIELGFPKTTRGT 41

[Close]

BLAST of Cla018453 vs. TrEMBL
Match: A5AXJ1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014374 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.5e-08
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 1


Query: 1  MGSSDDYKFMEIRDAIASINQKVNLIGVIIEFGFPRRTKGT 42
          MG  DDY+FM I DA+AS+NQKVN+IGV++E G P+R+KGT
Sbjct: 1  MGGEDDYRFMAIEDAMASLNQKVNIIGVVVEMGMPKRSKGT 41

[Close]

BLAST of Cla018453 vs. NCBI nr
Match: gi|659066860|ref|XP_008464728.1| (PREDICTED: protection of telomeres protein 1a-like isoform X2 [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 2.6e-12
Identity = 41/60 (68.33%), Postives = 45/60 (75.00%), Query Frame = 1


Query: 2  GSSDDYKFMEIRDAIASINQKVNLIGVIIEFGFPRRTKGT-------VTGNDDTKAGLTA 55
          G SDDY+FMEIRDAIASINQKVN+IGVIIEFGFPRRTKGT       +      K G+TA
Sbjct: 3  GRSDDYRFMEIRDAIASINQKVNIIGVIIEFGFPRRTKGTDCFCAVKIVDQSHHKPGITA 62

[Close]

BLAST of Cla018453 vs. NCBI nr
Match: gi|659066858|ref|XP_008464669.1| (PREDICTED: protection of telomeres protein 1a-like isoform X1 [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 2.6e-12
Identity = 41/60 (68.33%), Postives = 45/60 (75.00%), Query Frame = 1


Query: 2  GSSDDYKFMEIRDAIASINQKVNLIGVIIEFGFPRRTKGT-------VTGNDDTKAGLTA 55
          G SDDY+FMEIRDAIASINQKVN+IGVIIEFGFPRRTKGT       +      K G+TA
Sbjct: 3  GRSDDYRFMEIRDAIASINQKVNIIGVIIEFGFPRRTKGTDCFCAVKIVDQSHHKPGITA 62

[Close]

BLAST of Cla018453 vs. NCBI nr
Match: gi|778657389|ref|XP_011650817.1| (PREDICTED: protection of telomeres protein 1a-like isoform X1 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 1.7e-11
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 1


Query: 2  GSSDDYKFMEIRDAIASINQKVNLIGVIIEFGFPRRTKGT-------VTGNDDTKAGLTA 55
          G SDDY+FMEIRDAIASINQKVN++GVIIEF FPRRTKGT       +      K G+TA
Sbjct: 3  GRSDDYRFMEIRDAIASINQKVNIVGVIIEFSFPRRTKGTDCFCAVKIVDQSHHKPGITA 62

[Close]

BLAST of Cla018453 vs. NCBI nr
Match: gi|778657392|ref|XP_004137504.2| (PREDICTED: protection of telomeres protein 1a-like isoform X2 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 1.7e-11
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 1


Query: 2  GSSDDYKFMEIRDAIASINQKVNLIGVIIEFGFPRRTKGT-------VTGNDDTKAGLTA 55
          G SDDY+FMEIRDAIASINQKVN++GVIIEF FPRRTKGT       +      K G+TA
Sbjct: 3  GRSDDYRFMEIRDAIASINQKVNIVGVIIEFSFPRRTKGTDCFCAVKIVDQSHHKPGITA 62

[Close]

BLAST of Cla018453 vs. NCBI nr
Match: gi|703110980|ref|XP_010099743.1| (Protection of telomeres protein 1 [Morus notabilis])

HSP 1 Score: 72.4 bits (176), Expect = 3.1e-10
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 1


Query: 1  MGSSDDYKFMEIRDAIASINQKVNLIGVIIEFGFPRRTKGT 42
          MG  DDYKF+EIRDAIASINQKV+LIGVIIE GFP++TKGT
Sbjct: 1  MGERDDYKFLEIRDAIASINQKVSLIGVIIECGFPKKTKGT 41

The following BLAST results are available for this feature:

BLAST of Cla018453 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTS7_CUCSA	1.2e-11	65.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042840 PE=4 SV=1	[more]
W9RZQ3_9ROSA	2.2e-10	82.93	Protection of telomeres protein 1 OS=Morus notabilis GN=L484_025176 PE=4 SV=1	[more]
B9I2E1_POPTR	7.0e-09	70.73	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s04380g PE=4 SV=1	[more]
B7T1J5_POPTR	7.0e-09	70.73	Protection of telomeres 1 protein OS=Populus trichocarpa PE=2 SV=1	[more]
A5AXJ1_VITVI	3.5e-08	65.85	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014374 PE=4 SV=1	[more]

BLAST of Cla018453 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659066860\|ref\|XP_008464728.1\|	2.6e-12	68.33	PREDICTED: protection of telomeres protein 1a-like isoform X2 [Cucumis melo]	[more]
gi\|659066858\|ref\|XP_008464669.1\|	2.6e-12	68.33	PREDICTED: protection of telomeres protein 1a-like isoform X1 [Cucumis melo]	[more]
gi\|778657389\|ref\|XP_011650817.1\|	1.7e-11	65.00	PREDICTED: protection of telomeres protein 1a-like isoform X1 [Cucumis sativus]	[more]
gi\|778657392\|ref\|XP_004137504.2\|	1.7e-11	65.00	PREDICTED: protection of telomeres protein 1a-like isoform X2 [Cucumis sativus]	[more]
gi\|703110980\|ref\|XP_010099743.1\|	3.1e-10	82.93	Protection of telomeres protein 1 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012340	NA-bd_OB-fold

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000723	telomere maintenance
cellular_component	GO:0000784	nuclear chromosome, telomeric region
molecular_function	GO:0043047	single-stranded telomeric DNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU07332	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla018453	Cla018453.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU07332	WMU07332	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 5..41 score: 5.7
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 8..41 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla018453	CmoCh13G010240	Cucurbita moschata (Rifu)	cmowmB194

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla018453	Cucumber (Gy14) v1	cgywmB193
Cla018453	Cucurbita maxima (Rimu)	cmawmB206
Cla018453	Cucurbita maxima (Rimu)	cmawmB396
Cla018453	Cucurbita moschata (Rifu)	cmowmB389
Cla018453	Melon (DHL92) v3.5.1	mewmB174
Cla018453	Watermelon (Charleston Gray)	wcgwmB255
Cla018453	Cucumber (Chinese Long) v2	cuwmB062
Cla018453	Cucurbita pepo (Zucchini)	cpewmB049
Cla018453	Cucurbita pepo (Zucchini)	cpewmB523
Cla018453	Bottle gourd (USVL1VR-Ls)	lsiwmB212
Cla018453	Cucumber (Gy14) v2	cgybwmB064
Cla018453	Melon (DHL92) v3.6.1	medwmB170
Cla018453	Silver-seed gourd	carwmB0387
Cla018453	Silver-seed gourd	carwmB0493
Cla018453	Cucumber (Chinese Long) v3	cucwmB070
Cla018453	Watermelon (97103) v2	wmwmbB291
Cla018453	Wax gourd	wgowmB518