Cla018416 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla018416
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Uncharacterized YGGT family conserved membrane protein (AHRD V1 -- Q7VC17_PROMA); contains Interpro domain(s) IPR003425 Protein of unknown function YGGT
Location	Chr4 : 21791174 .. 21791863 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCTTCGCTAATCGCTTCTCAAGCTCTCCCTCTTCGACGGCCCCTCCTCCCGCCGAAGCTCCACCGCCCACTACCTTCGCCGCTCCTCCTCCCTTTCTGCACTGTCAAGTCTCCAAATCTTCGCCTTAGGGTTTTAGCTTCCTCATCGCCTTCCTCTTATTCACCAAAACTTTCCCATCAATCACAAGAATTGCCGATTGCATCGCTCCTTACCGGCCCGACCCGGGTACTTGCTACCGTTCTCTCTGTTTCCCTAGCATTTTCGACCTTAATTGTTAAACTGGTTCAGAATGTTTGGCCGATTTTGATTCCTCAATGTCTCGTAAATCCCTGTACTGCGCTCGGTGCCTTCCACCCGGCCGGCTCCTTGTTCTTCGCTGCTTTGCGGGATCGTCCCAGTGGATATCTCAACACGCCTTTGACGGTGGTGGCTGCAGGGCTAGCTAAGTGGCTGGATATTTACAGTGGGGTTTTGATGGTTAGGGTTTTGCTGAGTTGGTTTCCTAACATCCCTTGGGACCGGCAGCCACTCTCTGCAATTCGTGATCTCTGTGATCCGTACTTGAACCTGTTCCGGAATATAATTCCTCCAATCTTCGATACCCTGGATGTTAGCCCACTTTTGGCTTTTGCGGTTCTGGGTACACTAGGATCAATTCTGAACAACAGCAGGGGCATGTATTGA

mRNA sequence

ATGGCGTCTTCGCTAATCGCTTCTCAAGCTCTCCCTCTTCGACGGCCCCTCCTCCCGCCGAAGCTCCACCGCCCACTACCTTCGCCGCTCCTCCTCCCTTTCTGCACTGTCAAGTCTCCAAATCTTCGCCTTAGGGTTTTAGCTTCCTCATCGCCTTCCTCTTATTCACCAAAACTTTCCCATCAATCACAAGAATTGCCGATTGCATCGCTCCTTACCGGCCCGACCCGGGTACTTGCTACCGTTCTCTCTGTTTCCCTAGCATTTTCGACCTTAATTGTTAAACTGGTTCAGAATGTTTGGCCGATTTTGATTCCTCAATGTCTCGTAAATCCCTGTACTGCGCTCGGTGCCTTCCACCCGGCCGGCTCCTTGTTCTTCGCTGCTTTGCGGGATCGTCCCAGTGGATATCTCAACACGCCTTTGACGGTGGTGGCTGCAGGGCTAGCTAAGTGGCTGGATATTTACAGTGGGGTTTTGATGGTTAGGGTTTTGCTGAGTTGGTTTCCTAACATCCCTTGGGACCGGCAGCCACTCTCTGCAATTCGTGATCTCTGTGATCCGTACTTGAACCTGTTCCGGAATATAATTCCTCCAATCTTCGATACCCTGGATGTTAGCCCACTTTTGGCTTTTGCGGTTCTGGGTACACTAGGATCAATTCTGAACAACAGCAGGGGCATGTATTGA

Coding sequence (CDS)

ATGGCGTCTTCGCTAATCGCTTCTCAAGCTCTCCCTCTTCGACGGCCCCTCCTCCCGCCGAAGCTCCACCGCCCACTACCTTCGCCGCTCCTCCTCCCTTTCTGCACTGTCAAGTCTCCAAATCTTCGCCTTAGGGTTTTAGCTTCCTCATCGCCTTCCTCTTATTCACCAAAACTTTCCCATCAATCACAAGAATTGCCGATTGCATCGCTCCTTACCGGCCCGACCCGGGTACTTGCTACCGTTCTCTCTGTTTCCCTAGCATTTTCGACCTTAATTGTTAAACTGGTTCAGAATGTTTGGCCGATTTTGATTCCTCAATGTCTCGTAAATCCCTGTACTGCGCTCGGTGCCTTCCACCCGGCCGGCTCCTTGTTCTTCGCTGCTTTGCGGGATCGTCCCAGTGGATATCTCAACACGCCTTTGACGGTGGTGGCTGCAGGGCTAGCTAAGTGGCTGGATATTTACAGTGGGGTTTTGATGGTTAGGGTTTTGCTGAGTTGGTTTCCTAACATCCCTTGGGACCGGCAGCCACTCTCTGCAATTCGTGATCTCTGTGATCCGTACTTGAACCTGTTCCGGAATATAATTCCTCCAATCTTCGATACCCTGGATGTTAGCCCACTTTTGGCTTTTGCGGTTCTGGGTACACTAGGATCAATTCTGAACAACAGCAGGGGCATGTATTGA

Protein sequence

MASSLIASQALPLRRPLLPPKLHRPLPSPLLLPFCTVKSPNLRLRVLASSSPSSYSPKLSHQSQELPIASLLTGPTRVLATVLSVSLAFSTLIVKLVQNVWPILIPQCLVNPCTALGAFHPAGSLFFAALRDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILNNSRGMY

Homology

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BLAST of Cla018416 vs. Swiss-Prot
Match: YMG12_ARATH (YlmG homolog protein 1-2, chloroplastic OS=Arabidopsis thaliana GN=YLMG1-2 PE=2 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.3e-58
Identity = 138/228 (60.53%), Postives = 153/228 (67.11%), Query Frame = 1


Query: 6   IASQALPLRRPLLPPKLHRP-LPSPLLLPFCTVKSPNLRL---RVLASSSPSSYSPKLSH 65
           +A +A  L  P LPP + RP L  P  L F      NL L   R + SS+ +S SP LS 
Sbjct: 9   LALRASILANPRLPPPIIRPRLSLPRKLSF------NLSLHNARTIVSSAVTSSSPVLSS 68

Query: 66  QSQELPIASLLTGPTRVLAT-VLSVSLAFSTLIVKLVQNVWPILIPQCLVNPCTALGA-F 125
           +    P     +  TR + T VL   +   +LI KL            +VN    + A F
Sbjct: 69  KP---PSQFPFSDSTRSITTLVLLAGVVIKSLIQKL---------SVAIVNLSPQIQASF 128

Query: 126 HPAGSLFFAALRDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPL 185
             A  LFFA+LRDRP+GYLNTPLTVVAAGL+KWLDIYSGVLMVRVLLSWFPNIPWDRQPL
Sbjct: 129 RTASPLFFASLRDRPAGYLNTPLTVVAAGLSKWLDIYSGVLMVRVLLSWFPNIPWDRQPL 188

Query: 186 SAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILNNSRG 228
           SAIRDLCDPYLNLFRNIIPP+FDTLDVSPLLAFAVLGTLGSILNNSRG
Sbjct: 189 SAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLGSILNNSRG 218

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BLAST of Cla018416 vs. Swiss-Prot
Match: YMG11_ARATH (YlmG homolog protein 1-1, chloroplastic OS=Arabidopsis thaliana GN=YLMG1-1 PE=2 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.4e-55
Identity = 129/241 (53.53%), Postives = 161/241 (66.80%), Query Frame = 1


Query: 5   LIASQALPLRRPL-LP-----PKLH----RPLPSPLLLPFCTVKSPNLR----LRVLASS 64
           + A  AL LR P+ LP     P+ H    +P P+ L  P     S +++    +R+ AS+
Sbjct: 1   MAAITALTLRSPVYLPSSATSPRFHGFTNQPPPARLFFPLNPFPSLSIQNPKSIRISASA 60

Query: 65  SPSSYSPKLSHQSQELPIASLLTGPTRVLATVLSVSLAFSTLIVK----LVQNVWPILIP 124
           SP + +P L  +      +S LTG TR LAT+ ++++A + ++ +     +Q   P++  
Sbjct: 61  SPIT-TPILQTEKSTAR-SSTLTGSTRSLATLAALAIAVTRVLAQKLSLAIQTSSPVIAD 120

Query: 125 QCLVNPCTALGAFHPAGSLFFAALRDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLL 184
               +  TA       G +FFA+LRDRP GYLNTPLTVVA G+ KWLDIYSGVLMVRVLL
Sbjct: 121 GLRFSLSTA-------GPVFFASLRDRPPGYLNTPLTVVAVGIKKWLDIYSGVLMVRVLL 180

Query: 185 SWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILNNSR 228
           SWFPNIPW+RQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSI++ S 
Sbjct: 181 SWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIVHGST 232

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BLAST of Cla018416 vs. Swiss-Prot
Match: YLMG2_ARATH (YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana GN=YLMG2 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.5e-12
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 1


Query: 144 VVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDT 203
           VVA GL  +L+IY+ +L+VR++L+WFP+ P     ++ +  LCDPYLN+FR  IPP+   
Sbjct: 133 VVANGLINFLNIYNTILVVRLVLTWFPSAP--PAIVNPLSTLCDPYLNIFRGFIPPL-GG 192

Query: 204 LDVSPLLAFAVLGTLGS 221
           LD+SP+LAF VL    S
Sbjct: 193 LDLSPILAFLVLNAFTS 206

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BLAST of Cla018416 vs. Swiss-Prot
Match: YCF19_GUITH (Uncharacterized protein ycf19 OS=Guillardia theta GN=ycf19 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.2e-12
Identity = 32/87 (36.78%), Postives = 54/87 (62.07%), Query Frame = 1


Query: 138 LNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNII 197
           ++   T++ +    +L IY  +L++RV L+WFPN+ W  QP  ++  + DPYL +FR I+
Sbjct: 1   MSNSFTLLFSSFIGFLQIYLILLLIRVSLTWFPNVNWYGQPFYSLSRITDPYLKMFRGIV 60

Query: 198 PPIFDTLDVSPLLAFAVLGTLGSILNN 225
           PP+   +D+SP+L F +L  +  I++N
Sbjct: 61  PPLIG-IDISPILGFILLQCIMQIVSN 86

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BLAST of Cla018416 vs. Swiss-Prot
Match: YCF19_PORPU (Uncharacterized protein ycf19 OS=Porphyra purpurea GN=ycf19 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.8e-10
Identity = 31/85 (36.47%), Postives = 51/85 (60.00%), Query Frame = 1


Query: 142 LTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIF 201
           L ++   +A + +IY  ++++++ L+WFP + W  +P  ++  + DPYL LFR  IPP+F
Sbjct: 8   LNLLLGSIANFSEIYLILILLKLSLAWFPTVNWYNEPFCSLNRITDPYLKLFRGSIPPMF 67

Query: 202 DTLDVSPLLAFAVLGTLGSILNNSR 227
             +D+SP+L    L  L  I NN R
Sbjct: 68  G-MDMSPMLGIIFLQCLMVIFNNVR 91

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BLAST of Cla018416 vs. TrEMBL
Match: A0A0A0LEB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G642720 PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 3.1e-102
Identity = 192/230 (83.48%), Postives = 210/230 (91.30%), Query Frame = 1


Query: 1   MASSLIASQALPLRRPLLPPKLHRPLPSPLLLPFCTVKSPNLRLRVLASSSPSSYSPKLS 60
           MASSLIASQ+LPLRRPLLPP L RP   PLLLP  TVKSPNL LRVLASSSPSSYSPKLS
Sbjct: 1   MASSLIASQSLPLRRPLLPPNLRRPPTYPLLLPLSTVKSPNLGLRVLASSSPSSYSPKLS 60

Query: 61  HQSQELPIASLLTGPTRVLATVLSVSLAFSTLIVKLVQNVWPILIPQCLV-NPCTALGAF 120
           HQSQE+PI+SLLTGPTR+LAT+LSVSLAFST+IV+LVQNVWPILIPQCL+ NPC+ LGA 
Sbjct: 61  HQSQEIPISSLLTGPTRILATILSVSLAFSTVIVQLVQNVWPILIPQCLINNPCSGLGAL 120

Query: 121 HPAGSLFFAALRDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPL 180
            PAGSLFFAA+R+R +  LNTPLTVVA GLAKWLDIYSGVLMVRVLLSWFPN+PW+RQPL
Sbjct: 121 QPAGSLFFAAVRNRTA--LNTPLTVVAVGLAKWLDIYSGVLMVRVLLSWFPNVPWERQPL 180

Query: 181 SAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILNNSRGMY 230
           SAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLG LG+I+ +S  +Y
Sbjct: 181 SAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGALGAIMGSSTRVY 228

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BLAST of Cla018416 vs. TrEMBL
Match: A0A0D2PA03_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G159100 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.4e-62
Identity = 140/222 (63.06%), Postives = 159/222 (71.62%), Query Frame = 1


Query: 11  LPLRRPLLPPKLHRP--LP-SPLLLPFCTVKSPNLRLRVLASSSPSSYSPKLSHQSQELP 70
           LP R P  P    +P  LP SP + P  +V  P   + + + S+P    P    +S E+P
Sbjct: 17  LPPRNPNFPIFTFKPIFLPLSPPIKPSNSVSKPPKFIPLASISAP----PATPCKSPEIP 76

Query: 71  IASLLTGPTRVLATVLSVSLAFSTLIVKLVQNVWPILIPQCLVNPCTALGAFHPAGSLFF 130
             S L G TR L T+ S++L+ + +  K++QN     I Q   NP     A    G LFF
Sbjct: 77  ALSPLNGSTRTLKTLFSLALSATIVFTKMIQNYALKTISQ---NP----NALSTVGPLFF 136

Query: 131 AALRDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCD 190
           A+L+DRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCD
Sbjct: 137 ASLKDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCD 196

Query: 191 PYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILNNSRGMY 230
           PYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILNNSRGMY
Sbjct: 197 PYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILNNSRGMY 227

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BLAST of Cla018416 vs. TrEMBL
Match: A0A061DLU9_THECC (YGGT family protein OS=Theobroma cacao GN=TCM_002686 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.4e-62
Identity = 143/228 (62.72%), Postives = 160/228 (70.18%), Query Frame = 1


Query: 5   LIASQALPLRRPLLPPKLHRPLPSPLLLPFCTVKSPNLR---LRVLASSSPSSYSPKLSH 64
           L AS  LP R P+ P    +     L LP     +PN +     +LAS SPS   P    
Sbjct: 10  LRASNYLPPRNPISPIFTSKTNSLALSLPI-KPSNPNQKHPKFTLLASVSPSRTIPC--- 69

Query: 65  QSQELPIASLLTGPTRVLATVLSVSLAFSTLIVKLVQNVWPILIPQCLVNPCTALGAFHP 124
           +  ++P  S L   TR L T+ S++L+ + +  K+VQN     I Q   NP     AF  
Sbjct: 70  RPPQIPAQSRLKDSTRTLKTLFSIALSATIIFTKMVQNFALKTISQ---NP----NAFST 129

Query: 125 AGSLFFAALRDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSA 184
            G LFFA+L+DRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSA
Sbjct: 130 VGPLFFASLKDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSA 189

Query: 185 IRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILNNSRGMY 230
           IRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILNNSRGMY
Sbjct: 190 IRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILNNSRGMY 226

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BLAST of Cla018416 vs. TrEMBL
Match: B9GQQ7_POPTR (YGGT family protein OS=Populus trichocarpa GN=POPTR_0002s25170g PE=4 SV=2)

HSP 1 Score: 238.4 bits (607), Expect = 8.5e-60
Identity = 144/254 (56.69%), Postives = 167/254 (65.75%), Query Frame = 1


Query: 1   MASSLIASQALPLRRPLLPP--KLHRPLP--------SPLLLPFCTVKSPNLRLRVLASS 60
           MA  L +     LR P LP    L R LP        + L LP  +    +L L+    S
Sbjct: 1   MAMMLSSQTGAVLRAPFLPSHSNLSRRLPLTATTTTTTTLCLP--SQNPLSLALKFPKPS 60

Query: 61  SPSSYSPK-------LSHQSQELPIASL--LTGPTRVLATVLSVSLAFSTLIVKLVQ--- 120
             S+ +PK       LS QS ++P  S   L G TR +AT+L+++L+ S + V  +Q   
Sbjct: 61  LSSTITPKQRIHRVHLSPQSTQIPTESQPQLIGSTRTVATILTLALSLSRIFVTSIQKFV 120

Query: 121 ---NVWPILIPQCLVNPCTALGAFHPAGSLFFAALRDRPSGYLNTPLTVVAAGLAKWLDI 180
              N++P    Q +          H  G  FFAAL+DRP+GYLNTPLTVVAAGLAKWLDI
Sbjct: 121 LSHNLFPTP-DQLVAIRALQSNLVHSVGPFFFAALKDRPTGYLNTPLTVVAAGLAKWLDI 180

Query: 181 YSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVL 230
           YSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVL
Sbjct: 181 YSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVL 240

[Close]

BLAST of Cla018416 vs. TrEMBL
Match: D7U9L1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0062g00910 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.9e-59
Identity = 139/241 (57.68%), Postives = 160/241 (66.39%), Query Frame = 1


Query: 3   SSLIASQALPLRRPLLPPKLHRPLPSPL------LLPFCTVKSPNLRLRVLASSSPSSYS 62
           +SL+ASQ L LR P   P LH P  +PL      L  F   KS  LRLR   ++      
Sbjct: 2   ASLMASQTLLLRTP--NPTLHAPHCTPLPSFHVSLPTFSPPKSHRLRLRFRRAA------ 61

Query: 63  PKLSHQSQELPIASLLTGPTRVLATVLSVSLAFSTLIVKLVQNVWPILIPQCLVNPCTAL 122
            KL+  +      +  T  TR ++ +L+ +LA S + +  +Q+++  L           L
Sbjct: 62  -KLAISASTTTPTTPFTDSTRTVSAILASALAVSKVFIAKIQDIFLNLKQIDFTPNPEEL 121

Query: 123 GAFHP--------AGSLFFAALRDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSW 182
            A            G LFFAA RDRPSGYLNTPLTVVAAG+AKWLDIYSGVLMVRVLLSW
Sbjct: 122 AAIRDLRSSVVCAVGPLFFAAARDRPSGYLNTPLTVVAAGMAKWLDIYSGVLMVRVLLSW 181

Query: 183 FPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILNNSRGM 230
           FPNIPWDRQPLSAIRDLCDPYLNLFRNIIPP+FDTLDVSPLLAFAVLGTLGSILNNSRGM
Sbjct: 182 FPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLGSILNNSRGM 233

[Close]

BLAST of Cla018416 vs. NCBI nr
Match: gi|449453352|ref|XP_004144422.1| (PREDICTED: uncharacterized protein LOC101222332 [Cucumis sativus])

HSP 1 Score: 379.4 bits (973), Expect = 4.4e-102
Identity = 192/230 (83.48%), Postives = 210/230 (91.30%), Query Frame = 1


Query: 1   MASSLIASQALPLRRPLLPPKLHRPLPSPLLLPFCTVKSPNLRLRVLASSSPSSYSPKLS 60
           MASSLIASQ+LPLRRPLLPP L RP   PLLLP  TVKSPNL LRVLASSSPSSYSPKLS
Sbjct: 1   MASSLIASQSLPLRRPLLPPNLRRPPTYPLLLPLSTVKSPNLGLRVLASSSPSSYSPKLS 60

Query: 61  HQSQELPIASLLTGPTRVLATVLSVSLAFSTLIVKLVQNVWPILIPQCLV-NPCTALGAF 120
           HQSQE+PI+SLLTGPTR+LAT+LSVSLAFST+IV+LVQNVWPILIPQCL+ NPC+ LGA 
Sbjct: 61  HQSQEIPISSLLTGPTRILATILSVSLAFSTVIVQLVQNVWPILIPQCLINNPCSGLGAL 120

Query: 121 HPAGSLFFAALRDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPL 180
            PAGSLFFAA+R+R +  LNTPLTVVA GLAKWLDIYSGVLMVRVLLSWFPN+PW+RQPL
Sbjct: 121 QPAGSLFFAAVRNRTA--LNTPLTVVAVGLAKWLDIYSGVLMVRVLLSWFPNVPWERQPL 180

Query: 181 SAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILNNSRGMY 230
           SAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLG LG+I+ +S  +Y
Sbjct: 181 SAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGALGAIMGSSTRVY 228

[Close]

BLAST of Cla018416 vs. NCBI nr
Match: gi|659120629|ref|XP_008460284.1| (PREDICTED: uncharacterized protein LOC103499156 [Cucumis melo])

HSP 1 Score: 379.4 bits (973), Expect = 4.4e-102
Identity = 192/226 (84.96%), Postives = 207/226 (91.59%), Query Frame = 1


Query: 1   MASSLIASQALPLRRPLLPPKLHRPLPSPLLLPFCTVKSPNLRLRVLASSSPSSYSPKLS 60
           MASSLIASQ+LPLRRPLLPP L RP PSPLLLP  TVKSPNL LRVLASSS SSYSPKLS
Sbjct: 1   MASSLIASQSLPLRRPLLPPNLRRPPPSPLLLPLSTVKSPNLGLRVLASSSLSSYSPKLS 60

Query: 61  HQSQELPIASLLTGPTRVLATVLSVSLAFSTLIVKLVQNVWPILIPQCLVN-PCTALGAF 120
            Q QE+PI+ LLTGPTR+LAT+LSVSLAFST+IVKLVQNVWPILIPQCL+N PC+ LGA 
Sbjct: 61  RQLQEIPISPLLTGPTRILATLLSVSLAFSTVIVKLVQNVWPILIPQCLINNPCSGLGAL 120

Query: 121 HPAGSLFFAALRDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPL 180
            PAGSLFFA+LR+   G LNTPLTVVA GLAKWLDIYSG+LMVRVLLSWFPNIPW+RQPL
Sbjct: 121 QPAGSLFFASLRNPSVGGLNTPLTVVAVGLAKWLDIYSGILMVRVLLSWFPNIPWERQPL 180

Query: 181 SAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILNNS 226
           SAIRDLCDPYLNLFRNIIPP+FDTLDVSPLLAFAVLGTLGSIL+N+
Sbjct: 181 SAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLGSILSNT 226

[Close]

BLAST of Cla018416 vs. NCBI nr
Match: gi|823189697|ref|XP_012490916.1| (PREDICTED: uncharacterized protein LOC105803337 [Gossypium raimondii])

HSP 1 Score: 247.7 bits (631), Expect = 2.0e-62
Identity = 140/222 (63.06%), Postives = 159/222 (71.62%), Query Frame = 1


Query: 11  LPLRRPLLPPKLHRP--LP-SPLLLPFCTVKSPNLRLRVLASSSPSSYSPKLSHQSQELP 70
           LP R P  P    +P  LP SP + P  +V  P   + + + S+P    P    +S E+P
Sbjct: 17  LPPRNPNFPIFTFKPIFLPLSPPIKPSNSVSKPPKFIPLASISAP----PATPCKSPEIP 76

Query: 71  IASLLTGPTRVLATVLSVSLAFSTLIVKLVQNVWPILIPQCLVNPCTALGAFHPAGSLFF 130
             S L G TR L T+ S++L+ + +  K++QN     I Q   NP     A    G LFF
Sbjct: 77  ALSPLNGSTRTLKTLFSLALSATIVFTKMIQNYALKTISQ---NP----NALSTVGPLFF 136

Query: 131 AALRDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCD 190
           A+L+DRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCD
Sbjct: 137 ASLKDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCD 196

Query: 191 PYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILNNSRGMY 230
           PYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILNNSRGMY
Sbjct: 197 PYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILNNSRGMY 227

[Close]

BLAST of Cla018416 vs. NCBI nr
Match: gi|590713329|ref|XP_007049612.1| (YGGT family protein [Theobroma cacao])

HSP 1 Score: 247.7 bits (631), Expect = 2.0e-62
Identity = 143/228 (62.72%), Postives = 160/228 (70.18%), Query Frame = 1


Query: 5   LIASQALPLRRPLLPPKLHRPLPSPLLLPFCTVKSPNLR---LRVLASSSPSSYSPKLSH 64
           L AS  LP R P+ P    +     L LP     +PN +     +LAS SPS   P    
Sbjct: 10  LRASNYLPPRNPISPIFTSKTNSLALSLPI-KPSNPNQKHPKFTLLASVSPSRTIPC--- 69

Query: 65  QSQELPIASLLTGPTRVLATVLSVSLAFSTLIVKLVQNVWPILIPQCLVNPCTALGAFHP 124
           +  ++P  S L   TR L T+ S++L+ + +  K+VQN     I Q   NP     AF  
Sbjct: 70  RPPQIPAQSRLKDSTRTLKTLFSIALSATIIFTKMVQNFALKTISQ---NP----NAFST 129

Query: 125 AGSLFFAALRDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSA 184
            G LFFA+L+DRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSA
Sbjct: 130 VGPLFFASLKDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSA 189

Query: 185 IRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILNNSRGMY 230
           IRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILNNSRGMY
Sbjct: 190 IRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILNNSRGMY 226

[Close]

BLAST of Cla018416 vs. NCBI nr
Match: gi|743833557|ref|XP_011024561.1| (PREDICTED: uncharacterized protein LOC105125696 [Populus euphratica])

HSP 1 Score: 240.4 bits (612), Expect = 3.2e-60
Identity = 141/247 (57.09%), Postives = 164/247 (66.40%), Query Frame = 1


Query: 1   MASSLIASQALPLRRPLLPP--KLHRPLP---SPLLLPF-----CTVKSPNLRLRVLASS 60
           MA  L +     LR P LP    L R LP   + L LP        +K P   L   +++
Sbjct: 1   MAMMLSSQTGAVLRAPFLPSHSNLSRRLPLTTTTLCLPSQNPLSLALKFPKPSLSPTSTT 60

Query: 61  SPSSYSPKLSHQSQELPIASL--LTGPTRVLATVLSVSLAFSTLIVKLVQ------NVWP 120
               +   LS QS ++P  S   L G TR +AT+L+++L+ S + V  +Q      N++P
Sbjct: 61  KQRIHRVHLSPQSTQIPTESQPQLIGSTRTVATILTLALSLSRIFVASIQKFVLSHNLFP 120

Query: 121 ILIPQCLVNPCTALGAFHPAGSLFFAALRDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMV 180
               Q +          H  G  FFAAL+DRP+GYLNTPLTVVAAGLAKWLDIYSGVLMV
Sbjct: 121 TP-DQLMAIRALQSNLVHSVGPFFFAALKDRPTGYLNTPLTVVAAGLAKWLDIYSGVLMV 180

Query: 181 RVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 230
           RVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL
Sbjct: 181 RVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 240

The following BLAST results are available for this feature:

BLAST of Cla018416 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YMG12_ARATH	2.3e-58	60.53	YlmG homolog protein 1-2, chloroplastic OS=Arabidopsis thaliana GN=YLMG1-2 PE=2 ...	[more]
YMG11_ARATH	2.4e-55	53.53	YlmG homolog protein 1-1, chloroplastic OS=Arabidopsis thaliana GN=YLMG1-1 PE=2 ...	[more]
YLMG2_ARATH	2.5e-12	49.35	YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana GN=YLMG2 PE=2 SV=1	[more]
YCF19_GUITH	4.2e-12	36.78	Uncharacterized protein ycf19 OS=Guillardia theta GN=ycf19 PE=3 SV=1	[more]
YCF19_PORPU	1.8e-10	36.47	Uncharacterized protein ycf19 OS=Porphyra purpurea GN=ycf19 PE=3 SV=1	[more]

BLAST of Cla018416 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEB0_CUCSA	3.1e-102	83.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G642720 PE=4 SV=1	[more]
A0A0D2PA03_GOSRA	1.4e-62	63.06	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G159100 PE=4 SV=1	[more]
A0A061DLU9_THECC	1.4e-62	62.72	YGGT family protein OS=Theobroma cacao GN=TCM_002686 PE=4 SV=1	[more]
B9GQQ7_POPTR	8.5e-60	56.69	YGGT family protein OS=Populus trichocarpa GN=POPTR_0002s25170g PE=4 SV=2	[more]
D7U9L1_VITVI	1.9e-59	57.68	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0062g00910 PE=4 SV=...	[more]

BLAST of Cla018416 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453352\|ref\|XP_004144422.1\|	4.4e-102	83.48	PREDICTED: uncharacterized protein LOC101222332 [Cucumis sativus]	[more]
gi\|659120629\|ref\|XP_008460284.1\|	4.4e-102	84.96	PREDICTED: uncharacterized protein LOC103499156 [Cucumis melo]	[more]
gi\|823189697\|ref\|XP_012490916.1\|	2.0e-62	63.06	PREDICTED: uncharacterized protein LOC105803337 [Gossypium raimondii]	[more]
gi\|590713329\|ref\|XP_007049612.1\|	2.0e-62	62.72	YGGT family protein [Theobroma cacao]	[more]
gi\|743833557\|ref\|XP_011024561.1\|	3.2e-60	57.09	PREDICTED: uncharacterized protein LOC105125696 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003425	CCB3/YggT

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010020	chloroplast fission
biological_process	GO:0090143	nucleoid organization
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0042651	thylakoid membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU32533	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla018416	Cla018416.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU32533	WMU32533	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003425	CCB3/YggT	PFAM	PF02325	YGGT	coord: 153..221 score: 1.5
None	No IPR available	PANTHER	PTHR33219	FAMILY NOT NAMED	coord: 8..229 score: 6.6
None	No IPR available	PANTHER	PTHR33219:SF2	SUBFAMILY NOT NAMED	coord: 8..229 score: 6.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla018416	Cucumber (Gy14) v2	cgybwmB250
Cla018416	Cucumber (Gy14) v2	cgybwmB472
Cla018416	Cucumber (Gy14) v2	cgybwmB473
Cla018416	Cucumber (Gy14) v2	cgybwmB475
Cla018416	Melon (DHL92) v3.6.1	medwmB374
Cla018416	Melon (DHL92) v3.6.1	medwmB572
Cla018416	Silver-seed gourd	carwmB0227
Cla018416	Silver-seed gourd	carwmB0238
Cla018416	Silver-seed gourd	carwmB0609
Cla018416	Silver-seed gourd	carwmB0807
Cla018416	Silver-seed gourd	carwmB0927
Cla018416	Cucumber (Chinese Long) v3	cucwmB275
Cla018416	Cucumber (Chinese Long) v3	cucwmB530
Cla018416	Cucumber (Chinese Long) v3	cucwmB531
Cla018416	Watermelon (97103) v2	wmwmbB285
Cla018416	Watermelon (97103) v2	wmwmbB287
Cla018416	Watermelon (97103) v2	wmwmbB291
Cla018416	Wax gourd	wgowmB050
Cla018416	Wax gourd	wgowmB451
Cla018416	Watermelon (97103) v1	wmwmB050
Cla018416	Watermelon (97103) v1	wmwmB152
Cla018416	Cucumber (Gy14) v1	cgywmB090
Cla018416	Cucumber (Gy14) v1	cgywmB457
Cla018416	Cucumber (Gy14) v1	cgywmB695
Cla018416	Cucurbita maxima (Rimu)	cmawmB246
Cla018416	Cucurbita maxima (Rimu)	cmawmB582
Cla018416	Cucurbita maxima (Rimu)	cmawmB639
Cla018416	Cucurbita maxima (Rimu)	cmawmB806
Cla018416	Cucurbita maxima (Rimu)	cmawmB835
Cla018416	Cucurbita moschata (Rifu)	cmowmB236
Cla018416	Cucurbita moschata (Rifu)	cmowmB576
Cla018416	Cucurbita moschata (Rifu)	cmowmB632
Cla018416	Cucurbita moschata (Rifu)	cmowmB797
Cla018416	Cucurbita moschata (Rifu)	cmowmB825
Cla018416	Melon (DHL92) v3.5.1	mewmB380
Cla018416	Melon (DHL92) v3.5.1	mewmB584
Cla018416	Watermelon (Charleston Gray)	wcgwmB074
Cla018416	Watermelon (Charleston Gray)	wcgwmB195
Cla018416	Watermelon (Charleston Gray)	wcgwmB255
Cla018416	Cucumber (Chinese Long) v2	cuwmB266
Cla018416	Cucumber (Chinese Long) v2	cuwmB505
Cla018416	Cucurbita pepo (Zucchini)	cpewmB078
Cla018416	Cucurbita pepo (Zucchini)	cpewmB485
Cla018416	Cucurbita pepo (Zucchini)	cpewmB618
Cla018416	Cucurbita pepo (Zucchini)	cpewmB722
Cla018416	Cucurbita pepo (Zucchini)	cpewmB848
Cla018416	Bottle gourd (USVL1VR-Ls)	lsiwmB064
Cla018416	Bottle gourd (USVL1VR-Ls)	lsiwmB152
Cla018416	Bottle gourd (USVL1VR-Ls)	lsiwmB267