Cla017532 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla017532
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr10 : 23684543 .. 23684698 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATTTGAAGAAGAGGAAGCTGGAGGAAACAGCCGGCAACGGTGAAGTTTCTTCCGTCGAACATTTGCGTTCTCTGCTCGAACCGCTTCCCAAACCGCAACTCGTCGATCTCCTTGCTAGACTGTGCGTCTCTTCTCCCTTCTTTATTTAA

mRNA sequence

ATGGAGGATTTGAAGAAGAGGAAGCTGGAGGAAACAGCCGGCAACGGTGAAGTTTCTTCCGTCGAACATTTGCGTTCTCTGCTCGAACCGCTTCCCAAACCGCAACTCGTCGATCTCCTTGCTAGACTGTGCGTCTCTTCTCCCTTCTTTATTTAA

Coding sequence (CDS)

ATGGAGGATTTGAAGAAGAGGAAGCTGGAGGAAACAGCCGGCAACGGTGAAGTTTCTTCCGTCGAACATTTGCGTTCTCTGCTCGAACCGCTTCCCAAACCGCAACTCGTCGATCTCCTTGCTAGACTGTGCGTCTCTTCTCCCTTCTTTATTTAA

Protein sequence

MEDLKKRKLEETAGNGEVSSVEHLRSLLEPLPKPQLVDLLARLCVSSPFFI

Homology

[Close]

BLAST of Cla017532 vs. TrEMBL
Match: A0A0A0LEH0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G809410 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.3e-12
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 1


Query: 1  MEDLKKRKLEETAGNGEVSSVEHLRSLLEPLPKPQLVDLLARL 44
          MEDLKKRKLEET GN E SS+EHLR+LLEPLPKPQLVDLLARL
Sbjct: 1  MEDLKKRKLEETVGNAEFSSLEHLRTLLEPLPKPQLVDLLARL 43

[Close]

BLAST of Cla017532 vs. TrEMBL
Match: W9RRQ2_9ROSA (Uncharacterized RNA-binding protein OS=Morus notabilis GN=L484_018029 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-10
Identity = 36/43 (83.72%), Postives = 38/43 (88.37%), Query Frame = 1


Query: 1  MEDLKKRKLEETAGNGEVSSVEHLRSLLEPLPKPQLVDLLARL 44
          MED+KKRKLEET GNGE SS EHLRSLL+PL KPQLVDLLA L
Sbjct: 1  MEDMKKRKLEETEGNGETSSEEHLRSLLDPLAKPQLVDLLAEL 43

[Close]

BLAST of Cla017532 vs. TrEMBL
Match: A0A0L9U8N0_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g222100 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.4e-09
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1


Query: 1  MEDLKKRKLEETAGNGEVSSVEHLRSLLEPLPKPQLVDLLARLCVS 47
          MEDLKKRKL+E AGNG+ +S E LR L+EPL KPQLVDLLA+LCVS
Sbjct: 1  MEDLKKRKLDE-AGNGDFASKEELRFLIEPLAKPQLVDLLAKLCVS 45

[Close]

BLAST of Cla017532 vs. TrEMBL
Match: M5W8B1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001255mg PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-07
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 1


Query: 1  MEDLKKRKLEETAGNGEVSSV---EHLRSLLEPLPKPQLVDLLARLCVSSP 49
          MED+KKRK+EE +GNGE  S    +HLRSLL+PL KPQLVDLLA+L    P
Sbjct: 1  MEDVKKRKIEEASGNGEEISTYSEDHLRSLLDPLAKPQLVDLLAKLGCQYP 51

[Close]

BLAST of Cla017532 vs. TrEMBL
Match: A0A059BI91_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02996 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.9e-07
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 1


Query: 1  MEDLKKRKLEETAGNGEVS-SVEHLRSLLEPLPKPQLVDLLARL 44
          MEDLKKRKL+ETAGNG  S S E+LRSLLEPL KP LV+LLA+L
Sbjct: 1  MEDLKKRKLDETAGNGGSSDSEENLRSLLEPLAKPHLVELLAKL 44

[Close]

BLAST of Cla017532 vs. NCBI nr
Match: gi|659084784|ref|XP_008443071.1| (PREDICTED: UBP1-associated protein 2C-like [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 2.5e-13
Identity = 41/43 (95.35%), Postives = 41/43 (95.35%), Query Frame = 1


Query: 1  MEDLKKRKLEETAGNGEVSSVEHLRSLLEPLPKPQLVDLLARL 44
          MEDLKKRKLEET GNGE SSVEHLRSLLEPLPKPQLVDLLARL
Sbjct: 1  MEDLKKRKLEETVGNGEFSSVEHLRSLLEPLPKPQLVDLLARL 43

[Close]

BLAST of Cla017532 vs. NCBI nr
Match: gi|449437591|ref|XP_004136575.1| (PREDICTED: UBP1-associated protein 2C-like [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 6.1e-12
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 1


Query: 1  MEDLKKRKLEETAGNGEVSSVEHLRSLLEPLPKPQLVDLLARL 44
          MEDLKKRKLEET GN E SS+EHLR+LLEPLPKPQLVDLLARL
Sbjct: 1  MEDLKKRKLEETVGNAEFSSLEHLRTLLEPLPKPQLVDLLARL 43

[Close]

BLAST of Cla017532 vs. NCBI nr
Match: gi|703122367|ref|XP_010102557.1| (Uncharacterized RNA-binding protein [Morus notabilis])

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-10
Identity = 36/43 (83.72%), Postives = 38/43 (88.37%), Query Frame = 1


Query: 1  MEDLKKRKLEETAGNGEVSSVEHLRSLLEPLPKPQLVDLLARL 44
          MED+KKRKLEET GNGE SS EHLRSLL+PL KPQLVDLLA L
Sbjct: 1  MEDMKKRKLEETEGNGETSSEEHLRSLLDPLAKPQLVDLLAEL 43

[Close]

BLAST of Cla017532 vs. NCBI nr
Match: gi|920695614|gb|KOM38839.1| (hypothetical protein LR48_Vigan03g222100 [Vigna angularis])

HSP 1 Score: 67.8 bits (164), Expect = 6.3e-09
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1


Query: 1  MEDLKKRKLEETAGNGEVSSVEHLRSLLEPLPKPQLVDLLARLCVS 47
          MEDLKKRKL+E AGNG+ +S E LR L+EPL KPQLVDLLA+LCVS
Sbjct: 1  MEDLKKRKLDE-AGNGDFASKEELRFLIEPLAKPQLVDLLAKLCVS 45

[Close]

BLAST of Cla017532 vs. NCBI nr
Match: gi|595817972|ref|XP_007204289.1| (hypothetical protein PRUPE_ppa001255mg [Prunus persica])

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-07
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 1


Query: 1  MEDLKKRKLEETAGNGEVSSV---EHLRSLLEPLPKPQLVDLLARLCVSSP 49
          MED+KKRK+EE +GNGE  S    +HLRSLL+PL KPQLVDLLA+L    P
Sbjct: 1  MEDVKKRKIEEASGNGEEISTYSEDHLRSLLDPLAKPQLVDLLAKLGCQYP 51

The following BLAST results are available for this feature:

BLAST of Cla017532 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEH0_CUCSA	4.3e-12	88.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G809410 PE=4 SV=1	[more]
W9RRQ2_9ROSA	1.1e-10	83.72	Uncharacterized RNA-binding protein OS=Morus notabilis GN=L484_018029 PE=4 SV=1	[more]
A0A0L9U8N0_PHAAN	4.4e-09	76.09	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g222100 PE=4 SV=1	[more]
M5W8B1_PRUPE	1.1e-07	64.71	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001255mg PE=4 SV=1	[more]
A0A059BI91_EUCGR	1.9e-07	77.27	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02996 PE=4 SV=1	[more]

BLAST of Cla017532 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659084784\|ref\|XP_008443071.1\|	2.5e-13	95.35	PREDICTED: UBP1-associated protein 2C-like [Cucumis melo]	[more]
gi\|449437591\|ref\|XP_004136575.1\|	6.1e-12	88.37	PREDICTED: UBP1-associated protein 2C-like [Cucumis sativus]	[more]
gi\|703122367\|ref\|XP_010102557.1\|	1.5e-10	83.72	Uncharacterized RNA-binding protein [Morus notabilis]	[more]
gi\|920695614\|gb\|KOM38839.1\|	6.3e-09	76.09	hypothetical protein LR48_Vigan03g222100 [Vigna angularis]	[more]
gi\|595817972\|ref\|XP_007204289.1\|	1.6e-07	64.71	hypothetical protein PRUPE_ppa001255mg [Prunus persica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0019013	viral nucleocapsid
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003690	double-stranded DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla017532	Cla017532.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla017532	Lsi03G017260	Bottle gourd (USVL1VR-Ls)	lsiwmB240

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla017532	Watermelon (97103) v2	wmwmbB051
Cla017532	Wax gourd	wgowmB024
Cla017532	Watermelon (97103) v1	wmwmB051
Cla017532	Cucumber (Gy14) v1	cgywmB456
Cla017532	Cucurbita maxima (Rimu)	cmawmB228
Cla017532	Cucurbita maxima (Rimu)	cmawmB781
Cla017532	Cucurbita moschata (Rifu)	cmowmB214
Cla017532	Cucurbita moschata (Rifu)	cmowmB774
Cla017532	Wild cucumber (PI 183967)	cpiwmB198
Cla017532	Melon (DHL92) v3.5.1	mewmB346
Cla017532	Watermelon (Charleston Gray)	wcgwmB051
Cla017532	Cucumber (Chinese Long) v2	cuwmB198
Cla017532	Cucurbita pepo (Zucchini)	cpewmB597
Cla017532	Cucurbita pepo (Zucchini)	cpewmB830
Cla017532	Cucumber (Gy14) v2	cgybwmB187
Cla017532	Melon (DHL92) v3.6.1	medwmB344
Cla017532	Melon (DHL92) v3.6.1	medwmB392
Cla017532	Silver-seed gourd	carwmB0148
Cla017532	Silver-seed gourd	carwmB0237
Cla017532	Cucumber (Chinese Long) v3	cucwmB208
Cla017532	Cucumber (Chinese Long) v3	cucwmB308