Cla017512 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla017512
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr10 : 23451559 .. 23451750 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATGAAGAAGTTTACCTGCGCCATCCTTGTCGCCACCGCCACCGTGAGTGCTGCTATGGCCTCCGGTGAAGGCCCGGCTCCCGCACCCGGCCCATCCTCCGGCGAAGCCTCATCTGCAGCCGCTTTGCAAGCTGTTGGAGCCTTCATTGGTGCTTCTCTTGCATCCCTCTTTGCTTACTACTTGTAA

mRNA sequence

ATGGACATGAAGAAGTTTACCTGCGCCATCCTTGTCGCCACCGCCACCGTGAGTGCTGCTATGGCCTCCGGTGAAGGCCCGGCTCCCGCACCCGGCCCATCCTCCGGCGAAGCCTCATCTGCAGCCGCTTTGCAAGCTGTTGGAGCCTTCATTGGTGCTTCTCTTGCATCCCTCTTTGCTTACTACTTGTAA

Coding sequence (CDS)

ATGGACATGAAGAAGTTTACCTGCGCCATCCTTGTCGCCACCGCCACCGTGAGTGCTGCTATGGCCTCCGGTGAAGGCCCGGCTCCCGCACCCGGCCCATCCTCCGGCGAAGCCTCATCTGCAGCCGCTTTGCAAGCTGTTGGAGCCTTCATTGGTGCTTCTCTTGCATCCCTCTTTGCTTACTACTTGTAA

Protein sequence

MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFAYYL

Homology

[Close]

BLAST of Cla017512 vs. Swiss-Prot
Match: AGP23_ARATH (Arabinogalactan peptide 23 OS=Arabidopsis thaliana GN=AGP23 PE=2 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 2.9e-11
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 1


Query: 1  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFA 60
          M+MKK  C +L A A+++A MA+ E  APAPGP+S   +++AAL A+G+ +GASL SLF+
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPAS---AASAALPALGSLVGASLVSLFS 60

Query: 61 YYL 64
          YYL
Sbjct: 61 YYL 60

[Close]

BLAST of Cla017512 vs. TrEMBL
Match: A0A059DIY4_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_A02403 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.0e-12
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 1


Query: 1  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFA 60
          MDMKK +CA+LVA A++SA +AS + PAPAPGPSSG   ++AAL   G+ +GAS+ S FA
Sbjct: 34 MDMKKISCAVLVAAASMSAVLASDDSPAPAPGPSSG---ASAALPVFGSLVGASVVSFFA 93

Query: 61 YYL 64
          YYL
Sbjct: 94 YYL 93

[Close]

BLAST of Cla017512 vs. TrEMBL
Match: I1L9W6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G094600 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-10
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 1


Query: 1  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFA 60
          MDMKK TCA+L+A A++SAA+A+ E PAPAPGPSSG    A+A  AVG+ +GAS+ S FA
Sbjct: 1  MDMKKVTCAVLIAAASMSAALAATEVPAPAPGPSSG----ASAAAAVGSLVGASVLSFFA 58

Query: 61 YY 63
           +
Sbjct: 61 LF 58

[Close]

BLAST of Cla017512 vs. TrEMBL
Match: V7AHI5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G150500g PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-10
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 1


Query: 1  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFA 60
          MDM+K TCAIL+A A+VSA MA+ E PAPAPGPSSG   ++AA   VG+ +GAS+ S FA
Sbjct: 1  MDMRKVTCAILIAAASVSATMAAAEVPAPAPGPSSG---ASAAFPLVGSLVGASVLSFFA 59

Query: 61 YY 63
           +
Sbjct: 61 LF 59

[Close]

BLAST of Cla017512 vs. TrEMBL
Match: V7AJQ0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G150600g PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.8e-10
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 1


Query: 1  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFA 60
          MDM+K TCAIL+A A+VSA +A+ E PAPAPGPSSG   ++AA   VG+ +GAS+ S FA
Sbjct: 1  MDMRKVTCAILIAAASVSATVAAAEVPAPAPGPSSG---ASAAFPLVGSLVGASVLSFFA 59

Query: 61 YY 63
           +
Sbjct: 61 LF 59

[Close]

BLAST of Cla017512 vs. TrEMBL
Match: A0A151R0A0_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_042934 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.8e-10
Identity = 36/62 (58.06%), Postives = 48/62 (77.42%), Query Frame = 1


Query: 1  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFA 60
          MDMKK TCA+L+A A++SAA+A+ E PAPAPGPSSG   ++A L  VG+ +GAS+ S FA
Sbjct: 1  MDMKKVTCAVLIAAASMSAAVAAVEVPAPAPGPSSG---ASATLPLVGSLVGASVLSFFA 59

Query: 61 YY 63
           +
Sbjct: 61 LF 59

[Close]

BLAST of Cla017512 vs. NCBI nr
Match: gi|629125825|gb|KCW90250.1| (hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis])

HSP 1 Score: 78.2 bits (191), Expect = 5.8e-12
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 1


Query: 1  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFA 60
          MDMKK +CA+LVA A++SA +AS + PAPAPGPSSG   ++AAL   G+ +GAS+ S FA
Sbjct: 34 MDMKKISCAVLVAAASMSAVLASDDSPAPAPGPSSG---ASAALPVFGSLVGASVVSFFA 93

Query: 61 YYL 64
          YYL
Sbjct: 94 YYL 93

[Close]

BLAST of Cla017512 vs. NCBI nr
Match: gi|947084319|gb|KRH33040.1| (hypothetical protein GLYMA_10G094600 [Glycine max])

HSP 1 Score: 73.2 bits (178), Expect = 1.9e-10
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 1


Query: 1  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFA 60
          MDMKK TCA+L+A A++SAA+A+ E PAPAPGPSSG    A+A  AVG+ +GAS+ S FA
Sbjct: 1  MDMKKVTCAVLIAAASMSAALAATEVPAPAPGPSSG----ASAAAAVGSLVGASVLSFFA 58

Query: 61 YY 63
           +
Sbjct: 61 LF 58

[Close]

BLAST of Cla017512 vs. NCBI nr
Match: gi|593261818|ref|XP_007133088.1| (hypothetical protein PHAVU_011G150500g [Phaseolus vulgaris])

HSP 1 Score: 73.2 bits (178), Expect = 1.9e-10
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 1


Query: 1  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFA 60
          MDM+K TCAIL+A A+VSA MA+ E PAPAPGPSSG   ++AA   VG+ +GAS+ S FA
Sbjct: 1  MDMRKVTCAILIAAASVSATMAAAEVPAPAPGPSSG---ASAAFPLVGSLVGASVLSFFA 59

Query: 61 YY 63
           +
Sbjct: 61 LF 59

[Close]

BLAST of Cla017512 vs. NCBI nr
Match: gi|1012323911|gb|KYP35980.1| (hypothetical protein KK1_042934 [Cajanus cajan])

HSP 1 Score: 71.6 bits (174), Expect = 5.4e-10
Identity = 36/62 (58.06%), Postives = 48/62 (77.42%), Query Frame = 1


Query: 1  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFA 60
          MDMKK TCA+L+A A++SAA+A+ E PAPAPGPSSG   ++A L  VG+ +GAS+ S FA
Sbjct: 1  MDMKKVTCAVLIAAASMSAAVAAVEVPAPAPGPSSG---ASATLPLVGSLVGASVLSFFA 59

Query: 61 YY 63
           +
Sbjct: 61 LF 59

[Close]

BLAST of Cla017512 vs. NCBI nr
Match: gi|947107092|gb|KRH55475.1| (hypothetical protein GLYMA_06G257800 [Glycine max])

HSP 1 Score: 71.6 bits (174), Expect = 5.4e-10
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 1


Query: 1  MDMKKFTCAILVATATVSAAMASGEGPAPAPGPSSGEASSAAALQAVGAFIGASLASLFA 60
          MDMKK TCA+L+A A+VSA +A+ E PAPAPGPSSG   ++A+L  +G+ +GAS+ S FA
Sbjct: 1  MDMKKVTCAVLIAAASVSAVVAATEVPAPAPGPSSG---ASASLPLIGSLVGASVLSFFA 59

Query: 61 YY 63
           +
Sbjct: 61 LF 59

The following BLAST results are available for this feature:

BLAST of Cla017512 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AGP23_ARATH	2.9e-11	53.97	Arabinogalactan peptide 23 OS=Arabidopsis thaliana GN=AGP23 PE=2 SV=2	[more]

BLAST of Cla017512 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A059DIY4_EUCGR	4.0e-12	60.32	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_A02403 PE=4 ...	[more]
I1L9W6_SOYBN	1.3e-10	59.68	Uncharacterized protein OS=Glycine max GN=GLYMA_10G094600 PE=4 SV=1	[more]
V7AHI5_PHAVU	1.3e-10	59.68	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G150500g PE=4 SV=1	[more]
V7AJQ0_PHAVU	3.8e-10	58.06	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G150600g PE=4 SV=1	[more]
A0A151R0A0_CAJCA	3.8e-10	58.06	Uncharacterized protein OS=Cajanus cajan GN=KK1_042934 PE=4 SV=1	[more]

BLAST of Cla017512 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|629125825\|gb\|KCW90250.1\|	5.8e-12	60.32	hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis]	[more]
gi\|947084319\|gb\|KRH33040.1\|	1.9e-10	59.68	hypothetical protein GLYMA_10G094600 [Glycine max]	[more]
gi\|593261818\|ref\|XP_007133088.1\|	1.9e-10	59.68	hypothetical protein PHAVU_011G150500g [Phaseolus vulgaris]	[more]
gi\|1012323911\|gb\|KYP35980.1\|	5.4e-10	58.06	hypothetical protein KK1_042934 [Cajanus cajan]	[more]
gi\|947107092\|gb\|KRH55475.1\|	5.4e-10	56.45	hypothetical protein GLYMA_06G257800 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla017512	Cla017512.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34672	FAMILY NOT NAMED	coord: 1..63 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla017512	Watermelon (97103) v2	wmwmbB051
Cla017512	Wax gourd	wgowmB024
Cla017512	Cucumber (Gy14) v1	cgywmB456
Cla017512	Cucurbita maxima (Rimu)	cmawmB228
Cla017512	Cucurbita maxima (Rimu)	cmawmB781
Cla017512	Cucurbita moschata (Rifu)	cmowmB214
Cla017512	Cucurbita moschata (Rifu)	cmowmB774
Cla017512	Wild cucumber (PI 183967)	cpiwmB198
Cla017512	Melon (DHL92) v3.5.1	mewmB346
Cla017512	Watermelon (Charleston Gray)	wcgwmB051
Cla017512	Cucumber (Chinese Long) v2	cuwmB198
Cla017512	Cucurbita pepo (Zucchini)	cpewmB597
Cla017512	Cucurbita pepo (Zucchini)	cpewmB830
Cla017512	Bottle gourd (USVL1VR-Ls)	lsiwmB240
Cla017512	Cucumber (Gy14) v2	cgybwmB187
Cla017512	Melon (DHL92) v3.6.1	medwmB344
Cla017512	Silver-seed gourd	carwmB0148
Cla017512	Silver-seed gourd	carwmB0237
Cla017512	Cucumber (Chinese Long) v3	cucwmB208