Cla017007 (gene) Watermelon (97103) v1

Overview
NameCla017007
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr10 : 21100492 .. 21100692 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGATGACTCTGTCCATCGCACATTATCAGGTCACCTCCATGTGCCGCTTCTTAACGGAGATAAGCAAAACGACGTCGAACAGCAACCCATCACCGCCGCCAATGCCGGTGGCGCCACCTCCTTCGTCAAAACCTGCTTCAATGGACTCAACGCTCTTTCAGGTTCTAATTTTTTATTTCCTCTTTTATTTCTTTGA

mRNA sequence

ATGGATGATGACTCTGTCCATCGCACATTATCAGGTCACCTCCATGTGCCGCTTCTTAACGGAGATAAGCAAAACGACGTCGAACAGCAACCCATCACCGCCGCCAATGCCGGTGGCGCCACCTCCTTCGTCAAAACCTGCTTCAATGGACTCAACGCTCTTTCAGGTTCTAATTTTTTATTTCCTCTTTTATTTCTTTGA

Coding sequence (CDS)

ATGGATGATGACTCTGTCCATCGCACATTATCAGGTCACCTCCATGTGCCGCTTCTTAACGGAGATAAGCAAAACGACGTCGAACAGCAACCCATCACCGCCGCCAATGCCGGTGGCGCCACCTCCTTCGTCAAAACCTGCTTCAATGGACTCAACGCTCTTTCAGGTTCTAATTTTTTATTTCCTCTTTTATTTCTTTGA

Protein sequence

MDDDSVHRTLSGHLHVPLLNGDKQNDVEQQPITAANAGGATSFVKTCFNGLNALSGSNFLFPLLFL
Homology
[Close]
BLAST of Cla017007 vs. NCBI nr
Match: gi|449459482|ref|XP_004147475.1| (PREDICTED: vacuolar amino acid transporter 1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 9.7e-18
Identity = 48/61 (78.69%), Postives = 49/61 (80.33%), Query Frame = 1 

Query: 1  MDDDSVHRTLSGHLHVPLLNGDKQN-DVEQQPITAANAGGATSFVKTCFNGLNALSGSNF 60
          MDD+ VHRTLSGHLH PLLNG KQN DVE QP T  NAGG TSFVKTCFNGLNALSG   
Sbjct: 1  MDDEFVHRTLSGHLHAPLLNGHKQNNDVEHQPTTIVNAGGTTSFVKTCFNGLNALSGVGI 60

[Close]
BLAST of Cla017007 vs. NCBI nr
Match: gi|659085421|ref|XP_008443410.1| (PREDICTED: vacuolar amino acid transporter 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 6.3e-17
Identity = 49/62 (79.03%), Postives = 50/62 (80.65%), Query Frame = 1 

Query: 1  MDDDSVHRTLSGHLHVPLLNGDKQN-DVEQQPITA-ANAGGATSFVKTCFNGLNALSGSN 60
          MDD+ VHRTLSGHLH PLLNG KQN DVE QP T   NAGGATSFVKTCFNGLNALSG  
Sbjct: 1  MDDEFVHRTLSGHLHAPLLNGHKQNDDVEHQPTTTIVNAGGATSFVKTCFNGLNALSGVG 60

The following BLAST results are available for this feature:
BLAST of Cla017007 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449459482|ref|XP_004147475.1|9.7e-1878.69PREDICTED: vacuolar amino acid transporter 1-like isoform X2 [Cucumis sativus][more]
gi|659085421|ref|XP_008443410.1|6.3e-1779.03PREDICTED: vacuolar amino acid transporter 1-like isoform X2 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005774 vacuolar membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla017007Cla017007.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla017007Cla97C10G197930Watermelon (97103) v2wmwmbB051
Cla017007ClCG10G015050Watermelon (Charleston Gray)wcgwmB051
Cla017007Cucsa.338910Cucumber (Gy14) v1cgywmB609
Cla017007CmaCh11G010220Cucurbita maxima (Rimu)cmawmB089
Cla017007CmoCh11G010430Cucurbita moschata (Rifu)cmowmB080
Cla017007Lsi03G014830Bottle gourd (USVL1VR-Ls)lsiwmB240
Cla017007Cp4.1LG04g01500Cucurbita pepo (Zucchini)cpewmB641
Cla017007CsGy3G036570Cucumber (Gy14) v2cgybwmB187
Cla017007MELO3C009869.2Melon (DHL92) v3.6.1medwmB344
Cla017007Carg22890Silver-seed gourdcarwmB0201
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla017007Cucurbita pepo (Zucchini)cpewmB597
Cla017007Bottle gourd (USVL1VR-Ls)lsiwmB181
Cla017007Cucumber (Gy14) v2cgybwmB347
Cla017007Melon (DHL92) v3.6.1medwmB006
Cla017007Melon (DHL92) v3.6.1medwmB047
Cla017007Silver-seed gourdcarwmB0249
Cla017007Silver-seed gourdcarwmB0431
Cla017007Cucumber (Chinese Long) v3cucwmB208
Cla017007Cucumber (Chinese Long) v3cucwmB393
Cla017007Cucumber (Chinese Long) v3cucwmB397
Cla017007Watermelon (97103) v2wmwmbB076
Cla017007Wax gourdwgowmB021
Cla017007Wax gourdwgowmB122
Cla017007Watermelon (97103) v1wmwmB009
Cla017007Watermelon (97103) v1wmwmB045
Cla017007Cucumber (Gy14) v1cgywmB281
Cla017007Cucumber (Gy14) v1cgywmB520
Cla017007Cucurbita maxima (Rimu)cmawmB228
Cla017007Cucurbita maxima (Rimu)cmawmB257
Cla017007Cucurbita maxima (Rimu)cmawmB657
Cla017007Cucurbita maxima (Rimu)cmawmB658
Cla017007Cucurbita moschata (Rifu)cmowmB214
Cla017007Cucurbita moschata (Rifu)cmowmB652
Cla017007Wild cucumber (PI 183967)cpiwmB198
Cla017007Wild cucumber (PI 183967)cpiwmB376
Cla017007Wild cucumber (PI 183967)cpiwmB379
Cla017007Melon (DHL92) v3.5.1mewmB008
Cla017007Melon (DHL92) v3.5.1mewmB045
Cla017007Melon (DHL92) v3.5.1mewmB144
Cla017007Melon (DHL92) v3.5.1mewmB346
Cla017007Watermelon (Charleston Gray)wcgwmB018
Cla017007Watermelon (Charleston Gray)wcgwmB272
Cla017007Cucumber (Chinese Long) v2cuwmB198
Cla017007Cucumber (Chinese Long) v2cuwmB368
Cla017007Cucumber (Chinese Long) v2cuwmB371
Cla017007Cucurbita pepo (Zucchini)cpewmB167