Cla016988 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla016988
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Rhodanese-like domain-containing protein (Fragment) (AHRD V1 *--- D7ULI0_LISMO)
Location	Chr10 : 21318202 .. 21320156 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAACGGTGCTCATACGGCGGCCATGGCTACAATTACTCCTATCCACAGACCAACCATTTTTTGTACTTTCGGTTTCACTATTACCGCCATTAAGCTTCCGCTCCGCCGCCGGAAATGGAAGCCAAGGCAAATTGCAGTTTCCTCCGCCCCTCTAACTCAACCCAACACCTTTCTTTCCGTCTCCCTATCAAACTTAGGTCCAAACGACGAACATCCTCAGCTCCTTCCCAATACTTCGGAGGAAGATTTTGTAGTCGTTAATTTCTACCATTTTGTGTTCATTGAAGATCCCGAAGCTGAAGTCGCTAAGCATCTCTACTTCACGAGGGTAATTTCTAGATTTTTCTTTTTCTTCCAAGTATATTTAATCCATAGTTGCTCTTAACAAAACCTAGAAATGGTGATTTGGGTAATTAGTTATGAGCGAAATTTGTAATGTGCGTTTCTATTTTTTGTTTAGGACTTGGATATACATGGCCGAGTCTACCTGAATGAACAAGGAATTAACGCACAGGTATTGTGTTCCGAATGGTATTTTTCATTTCCATGTTTTCCTGTTTTTCTAAATGACAGTCATTCACATGCCTATCCATTCTGTATGCTTTCTCTGATTTATCACTCTGGAGTTTGAGTTTAGAGTTCGCCATAGAAACTCTCTGAGGGAGCTTGGACATGGACAAATATAGGTTGTCAAACTATGAAGAACCTAGTTGATAAGAATTTATTTTTACTTTTCTATTCTTGCATGAATCCTATATACAACAGCAATGAGAGGAAATTGTGAGAAATAACCCTCAAATATTTTCATCTTTCACAACTGGCAACCTTTTAGAGAATTCGTTGAAATAGTTTTGCTCGGTCATCCCGGCCATTATCAAATTTTGGGGAAGATTAAATAAAATTTGGGAAAAAGATACCATCTCGGTCTTCATTGGCCAAGATTCCACCAAGAAAGTCCAAAAAAATTGATAGTTTGGATATACAAGAAAAAAAGTTAAATTTTTATTTGAATCTCGGGGTCGATCTTGGCTAGGAAAGACCTAGGAAAATTATTTCAACAAATTCTCTAAAAGGGTGCTAGTTGTGAAAGATGAAAACTTTTTTAGGTTACTTGTGACAATTTTCCCATCTCATTGGGTTTCATCCCAAAGGCTTTCCTAAAATTTAATTAAGTAATGGGGCATTTCCCCATCTTGCAATTGTAAAAATCAGTTTTGGGTTGAATTGCTGTAACACAATTTACCAAATTGTTGGTTTTTAGAATCATATACATGTGTTTTCTCAAGATCACATGTCATAATTGTAATCATTACATAAAGTGCAAAGAAAGTTGATTTGACTCTCAAGGTTATATTCTAATATTGTTTACAGTAGCGTCATTTCTTGTTTGTTTGAGTGCTGCAGAAGAGGTGGAAATTGATATTTGTGGGCATTTCAACTCGCAGGCTCGCAGCTTCTTTATTATCTTTTTGTTTCGTATTTGTTTTTTCATTTTGAATTCTCCAGATCTTCAGATGTCCGTTAACAGTAATATACATAAACGGGTGAAATATTATTCTGTAATTCGGGTTAAATAATTTTATATCAATCTTTGAACCTTAACACCAAGATCATATACCCAACGATACTAGTTTTACTTTCTCATTCCATTGTAATCATTAATCATCTTGTTTGTTTTCCGTTGATTGCTGTTTTCTTTTGATGCTAATCATATAATTGTTGGTTCAGTACAGTGGGCCATCAAAACATGCTCTTGCTTATGCTAACTGGTTAAGAGAAGATCCCAGATTTTCGGATATCCTAGTTCAAGTTTCTCCTGCAATAAATGGCCATGCATTTCCAAAGTTGAAGTTGCGTTATAAGCCCTCACTTGTACAAGTGAGTAAATTCACTTTCTTCAGAATGAATTTCATTGTTTTAAGTTTACCGCTAACCCCTTCTTTCCTTTAG

mRNA sequence

ATGTGGAACGGTGCTCATACGGCGGCCATGGCTACAATTACTCCTATCCACAGACCAACCATTTTTTGTACTTTCGGTTTCACTATTACCGCCATTAAGCTTCCGCTCCGCCGCCGGAAATGGAAGCCAAGGCAAATTGCAGTTTCCTCCGCCCCTCTAACTCAACCCAACACCTTTCTTTCCGTCTCCCTATCAAACTTAGGTCCAAACGACGAACATCCTCAGCTCCTTCCCAATACTTCGGAGGAAGATTTTGTAGTCGTTAATTTCTACCATTTTGTGTTCATTGAAGATCCCGAAGCTGAAGTCGCTAAGCATCTCTACTTCACGAGGGACTTGGATATACATGGCCGAGTCTACCTGAATGAACAAGGAATTAACGCACAGTACAGTGGGCCATCAAAACATGCTCTTGCTTATGCTAACTGGTTAAGAGAAGATCCCAGATTTTCGGATATCCTAGTTCAAGTTTCTCCTGCAATAAATGGCCATGCATTTCCAAAGTTGAAGTTGCGTTATAAGCCCTCACTTGTACAAGTGAGTAAATTCACTTTCTTCAGAATGAATTTCATTGTTTTAAGTTTACCGCTAACCCCTTCTTTCCTTTAG

Coding sequence (CDS)

ATGTGGAACGGTGCTCATACGGCGGCCATGGCTACAATTACTCCTATCCACAGACCAACCATTTTTTGTACTTTCGGTTTCACTATTACCGCCATTAAGCTTCCGCTCCGCCGCCGGAAATGGAAGCCAAGGCAAATTGCAGTTTCCTCCGCCCCTCTAACTCAACCCAACACCTTTCTTTCCGTCTCCCTATCAAACTTAGGTCCAAACGACGAACATCCTCAGCTCCTTCCCAATACTTCGGAGGAAGATTTTGTAGTCGTTAATTTCTACCATTTTGTGTTCATTGAAGATCCCGAAGCTGAAGTCGCTAAGCATCTCTACTTCACGAGGGACTTGGATATACATGGCCGAGTCTACCTGAATGAACAAGGAATTAACGCACAGTACAGTGGGCCATCAAAACATGCTCTTGCTTATGCTAACTGGTTAAGAGAAGATCCCAGATTTTCGGATATCCTAGTTCAAGTTTCTCCTGCAATAAATGGCCATGCATTTCCAAAGTTGAAGTTGCGTTATAAGCCCTCACTTGTACAAGTGAGTAAATTCACTTTCTTCAGAATGAATTTCATTGTTTTAAGTTTACCGCTAACCCCTTCTTTCCTTTAG

Protein sequence

MWNGAHTAAMATITPIHRPTIFCTFGFTITAIKLPLRRRKWKPRQIAVSSAPLTQPNTFLSVSLSNLGPNDEHPQLLPNTSEEDFVVVNFYHFVFIEDPEAEVAKHLYFTRDLDIHGRVYLNEQGINAQYSGPSKHALAYANWLREDPRFSDILVQVSPAINGHAFPKLKLRYKPSLVQVSKFTFFRMNFIVLSLPLTPSFL

Homology

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BLAST of Cla016988 vs. Swiss-Prot
Match: STR8_ARATH (Rhodanese-like domain-containing protein 8, chloroplastic OS=Arabidopsis thaliana GN=STR8 PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.7e-36
Identity = 73/97 (75.26%), Postives = 81/97 (83.51%), Query Frame = 1


Query: 83  EDFVVVNFYHFVFIEDPEAEVAKHLYFTRDLDIHGRVYLNEQGINAQYSGPSKHALAYAN 142
           EDF+VVNFY FV I DPEAE+ KHL F +DL+I GR+YLNEQGINAQYSGPSK ALAY  
Sbjct: 81  EDFIVVNFYRFVSIGDPEAEIEKHLSFLKDLNIRGRIYLNEQGINAQYSGPSKDALAYVE 140

Query: 143 WLREDPRFSDILVQVSPAINGHAFPKLKLRYKPSLVQ 180
           WL+ D RFSD+LVQ+SPA+N HAFPKLKL+ KPSLVQ
Sbjct: 141 WLKGDDRFSDLLVQMSPAMNRHAFPKLKLQNKPSLVQ 177

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BLAST of Cla016988 vs. Swiss-Prot
Match: Y205_BACP2 (UPF0176 protein BPUM_0205 OS=Bacillus pumilus (strain SAFR-032) GN=BPUM_0205 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.9e-14
Identity = 38/100 (38.00%), Postives = 62/100 (62.00%), Query Frame = 1


Query: 82  EEDFVVVNFYHFVFIEDPEAEVAKHLYFTRDLDIHGRVYLNEQGINAQYSGPSKHALAYA 141
           E+ + V+ +Y +V IEDPE   A+HL F ++L + GR+ ++ +GIN   SG  +    Y 
Sbjct: 2   EKQYRVLLYYQYVPIEDPETFTAEHLAFCKELGLLGRILISSEGINGTVSGTIEQTDKYM 61

Query: 142 NWLREDPRFSDILVQVSPAINGHAFPKLKLRYKPSLVQVS 182
             L+EDPRF+ + +++  A +GHAF K+ +R++  LV +S
Sbjct: 62  EALKEDPRFASMPIKIDEA-DGHAFKKMHVRHRNELVNLS 100

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BLAST of Cla016988 vs. Swiss-Prot
Match: Y734_CHLPN (UPF0176 protein CPn_0734/CP_0012/CPj0734/CpB0762 OS=Chlamydia pneumoniae GN=CPn_0734 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.9e-14
Identity = 35/96 (36.46%), Postives = 56/96 (58.33%), Query Frame = 1


Query: 82  EEDFVVVNFYHFVFIEDPEAEVAKHLYFTRDLDIHGRVYLNEQGINAQYSGPSKHALAYA 141
           E+ +  + +Y+   +++P  E+A H  F  DLD+  R+Y++EQGIN Q+SG   HA  Y 
Sbjct: 2   EKKYYALAYYYITRVDNPHEEIALHKKFLEDLDVSCRIYISEQGINGQFSGYEPHAELYM 61

Query: 142 NWLREDPRFSDILVQVSPAINGHAFPKLKLRYKPSL 178
            WL+E P FS I  ++   I  + FP++ ++Y+  L
Sbjct: 62  QWLKERPNFSKIKFKIH-HIKENIFPRITVKYRKEL 96

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BLAST of Cla016988 vs. Swiss-Prot
Match: Y274_BACVZ (UPF0176 protein RBAM_002740 OS=Bacillus velezensis (strain DSM 23117 / BGSC 10A6 / FZB42) GN=RBAM_002740 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.9e-14
Identity = 38/97 (39.18%), Postives = 62/97 (63.92%), Query Frame = 1


Query: 82  EEDFVVVNFYHFVFIEDPEAEVAKHLYFTRDLDIHGRVYLNEQGINAQYSGPSKHALAYA 141
           E+ + V+ +Y +V I++PE   A+HL F ++L + GR+ ++E+GIN   SG  +    Y 
Sbjct: 2   EKQYRVLLYYKYVKIDEPEEFTAQHLKFCKELGLLGRILISEEGINGTVSGTVEQTEQYM 61

Query: 142 NWLREDPRFSDILVQVSPAINGHAFPKLKLRYKPSLV 179
           N L+ DPRF+D+ +++  A +GHAF K+ +R+K  LV
Sbjct: 62  NALKADPRFADMPIKIDEA-DGHAFRKMFVRHKKELV 97

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BLAST of Cla016988 vs. Swiss-Prot
Match: Y378_PARUW (UPF0176 protein pc0378 OS=Protochlamydia amoebophila (strain UWE25) GN=pc0378 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.8e-13
Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = 1


Query: 82  EEDFVVVNFYHFVFIEDPEAEVAKHLYFTRDLDIHGRVYLNEQGINAQYSGPSKHALAYA 141
           E  F V+ +YHF  I DP  EV  H  F +D +I  R+YL+EQGIN Q SG  + A AY 
Sbjct: 4   EPSFFVLAYYHFTAIADPHQEVKAHKEFFKDRNITSRIYLSEQGINGQMSGKREDAEAYM 63

Query: 142 NWLREDPRFSDILVQVSPAINGHAFPKLKLRYKPSLVQVSK 183
            WL  +P F  +  ++  + + + FP+  ++Y+  LV + +
Sbjct: 64  KWLHANPLFETMPFKIH-SHHENVFPRQTVKYRKQLVALDE 103

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BLAST of Cla016988 vs. TrEMBL
Match: A0A0A0LHQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G824960 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 8.5e-80
Identity = 156/204 (76.47%), Postives = 170/204 (83.33%), Query Frame = 1


Query: 1   MWNGAHTAAMATITPIHRPTIFCTFGFTITAIKLPLRRRKWKPRQI-AVSSAPLTQPNTF 60
           MWN  H A   TIT  H PTIFC+ GFT+ A KLPLRR KWKP QI AVSSA LTQ NTF
Sbjct: 1   MWNVTHGAPTPTITLTHTPTIFCSIGFTVAATKLPLRRGKWKPTQIIAVSSASLTQSNTF 60

Query: 61  LSVSLSNLGPNDEHPQLLPNTSEEDFVVVNFYHFVFIEDPEAEVAKHLYFTRDLDIHGRV 120
            SVSLSNLGP++EH QLLP+ SEEDFVVVNFYHFVFIEDP+AEV+KHLYF RDLDIHGR+
Sbjct: 61  HSVSLSNLGPSEEHRQLLPHISEEDFVVVNFYHFVFIEDPQAEVSKHLYFMRDLDIHGRI 120

Query: 121 YLNEQGINAQYSGPSKHALAYANWLREDPRFSDILVQVSPAINGHAFPKLKLRYKPSLVQ 180
           YLNEQGINAQYSGPSKHALAYANWLREDPRF DILVQVSPAIN HAFPKLKLRYKPSLVQ
Sbjct: 121 YLNEQGINAQYSGPSKHALAYANWLREDPRFLDILVQVSPAINDHAFPKLKLRYKPSLVQ 180

Query: 181 VSKFTFFRMNFIVLS---LPLTPS 201
           + +  F  ++ +  S   +PLTPS
Sbjct: 181 M-EGDFSHVSLLDSSKRAVPLTPS 203

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BLAST of Cla016988 vs. TrEMBL
Match: V7CR20_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G333400g PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 6.6e-40
Identity = 100/180 (55.56%), Postives = 118/180 (65.56%), Query Frame = 1


Query: 5   AHTAAMATITPIHRPTIFCTFGFTITAIKLPLRRRKWKPRQIAVSSAPLTQPNTFLSVSL 64
           AH  A  ++ PI     FC+     + + LP +   +K +    SS  LT     L  +L
Sbjct: 17  AHAIA-PSVAPIVTAASFCS-----SRLVLPFQNSLFKFKFTDSSSLALTHRKHLLPAAL 76

Query: 65  SNLGPNDEHPQLLPNTSEED---FVVVNFYHFVFIEDPEAEVAKHLYFT--RDLDIHGRV 124
                    P   P+TS ED   F+VVNFYHFVFI+DP+AEVAKH  F   +DLDI+GRV
Sbjct: 77  ---------PLTQPSTSREDDFHFLVVNFYHFVFIQDPQAEVAKHRSFLELQDLDINGRV 136

Query: 125 YLNEQGINAQYSGPSKHALAYANWLREDPRFSDILVQVSPAINGHAFPKLKLRYKPSLVQ 180
           YLNEQGINAQYSGPSK ALAY NWLRED RFSD+LVQ+SP+ NGH FP LKLRYKPSLVQ
Sbjct: 137 YLNEQGINAQYSGPSKDALAYVNWLREDNRFSDMLVQISPSENGHTFPALKLRYKPSLVQ 181

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BLAST of Cla016988 vs. TrEMBL
Match: A0A0S3QW99_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G000500 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 4.3e-39
Identity = 96/179 (53.63%), Postives = 118/179 (65.92%), Query Frame = 1


Query: 3   NGAHTAAMATITPIHRPTIFCTFGFTITAIKLPLRRRKWKPRQIAVSSAPLTQPNTFLSV 62
           +GAH  A++ + PI       T  F   ++ LP +   ++ +    SS  LT     L  
Sbjct: 15  SGAHAIALS-LAPI------VTASFCSKSLVLPFQNFPFEFKLTDSSSLALTHRKQLLPA 74

Query: 63  SLSNLGPNDEHPQLLPNTSEEDFVVVNFYHFVFIEDPEAEVAKHLYFT--RDLDIHGRVY 122
           +LS   P+           + DFVVVNFYHFVFI+DP+AEV+KH  F   +DLDI+GRVY
Sbjct: 75  ALSLTQPSTARED------DFDFVVVNFYHFVFIQDPQAEVSKHRSFLELQDLDINGRVY 134

Query: 123 LNEQGINAQYSGPSKHALAYANWLREDPRFSDILVQVSPAINGHAFPKLKLRYKPSLVQ 180
           +NEQGINAQYSGPSK ALAY NWLR+D RFSDILVQ+SP+ NGH FP LKLRYKPSLVQ
Sbjct: 135 VNEQGINAQYSGPSKDALAYVNWLRQDNRFSDILVQISPSENGHTFPALKLRYKPSLVQ 180

[Close]

BLAST of Cla016988 vs. TrEMBL
Match: A0A0L9UKC3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g095400 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 4.3e-39
Identity = 96/179 (53.63%), Postives = 118/179 (65.92%), Query Frame = 1


Query: 3   NGAHTAAMATITPIHRPTIFCTFGFTITAIKLPLRRRKWKPRQIAVSSAPLTQPNTFLSV 62
           +GAH  A++ + PI       T  F   ++ LP +   ++ +    SS  LT     L  
Sbjct: 44  SGAHAIALS-LAPI------VTASFCSKSLVLPFQNFPFEFKLTDSSSLALTHRKQLLPA 103

Query: 63  SLSNLGPNDEHPQLLPNTSEEDFVVVNFYHFVFIEDPEAEVAKHLYFT--RDLDIHGRVY 122
           +LS   P+           + DFVVVNFYHFVFI+DP+AEV+KH  F   +DLDI+GRVY
Sbjct: 104 ALSLTQPSTARED------DFDFVVVNFYHFVFIQDPQAEVSKHRSFLELQDLDINGRVY 163

Query: 123 LNEQGINAQYSGPSKHALAYANWLREDPRFSDILVQVSPAINGHAFPKLKLRYKPSLVQ 180
           +NEQGINAQYSGPSK ALAY NWLR+D RFSDILVQ+SP+ NGH FP LKLRYKPSLVQ
Sbjct: 164 VNEQGINAQYSGPSKDALAYVNWLRQDNRFSDILVQISPSENGHTFPALKLRYKPSLVQ 209

[Close]

BLAST of Cla016988 vs. TrEMBL
Match: U5FPE7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s05490g PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 5.6e-39
Identity = 88/139 (63.31%), Postives = 101/139 (72.66%), Query Frame = 1


Query: 54  TQPNTFLSVSLSNLGPNDEHPQL-------LPNTS-----EEDFVVVNFYHFVFIEDPEA 113
           T    FLS+S S      +  +L       +P++S       DF+VVNFY FVFI DP  
Sbjct: 47  TTARPFLSLSRSQPDKAKQKQKLWKFNCATIPSSSTVANPSNDFIVVNFYRFVFINDPHE 106

Query: 114 EVAKHLYFTRDLDIHGRVYLNEQGINAQYSGPSKHALAYANWLREDPRFSDILVQVSPAI 173
           EVAKHL F + LDIHGR+Y+NEQGINAQYSGPSK ALAY  WLRED RFSDILVQ+SPA+
Sbjct: 107 EVAKHLSFLKGLDIHGRIYVNEQGINAQYSGPSKDALAYVEWLREDFRFSDILVQISPAL 166

Query: 174 NGHAFPKLKLRYKPSLVQV 181
           NGHAFPKLKLRYKPSLVQ+
Sbjct: 167 NGHAFPKLKLRYKPSLVQL 185

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BLAST of Cla016988 vs. NCBI nr
Match: gi|659085383|ref|XP_008443389.1| (PREDICTED: rhodanese-like domain-containing protein 8, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 308.1 bits (788), Expect = 1.1e-80
Identity = 158/204 (77.45%), Postives = 172/204 (84.31%), Query Frame = 1


Query: 1   MWNGAHTAAMATITPIHRPTIFCTFGFTITAIKLPLRRRKWKPRQI-AVSSAPLTQPNTF 60
           MWN AH A   TIT IHRPTIFC+ GFT+ A KLPLRR KWKPRQI AVSSA LT  NT 
Sbjct: 1   MWNVAHGAHTPTITLIHRPTIFCSIGFTVAACKLPLRRGKWKPRQIIAVSSASLTHSNTV 60

Query: 61  LSVSLSNLGPNDEHPQLLPNTSEEDFVVVNFYHFVFIEDPEAEVAKHLYFTRDLDIHGRV 120
            SVSLSNLGP++EH QLLP  SEEDFVVVNFYHFVFIEDP+AEV+KHLYF RDLDIHGR+
Sbjct: 61  HSVSLSNLGPSEEHRQLLPQISEEDFVVVNFYHFVFIEDPQAEVSKHLYFMRDLDIHGRI 120

Query: 121 YLNEQGINAQYSGPSKHALAYANWLREDPRFSDILVQVSPAINGHAFPKLKLRYKPSLVQ 180
           YLNEQGINAQYSGPSKHALAYANWLREDPRF DILVQVSPAI+GHAFPKLKLRYKPSLVQ
Sbjct: 121 YLNEQGINAQYSGPSKHALAYANWLREDPRFLDILVQVSPAIDGHAFPKLKLRYKPSLVQ 180

Query: 181 VSKFTFFRMNFIVLS---LPLTPS 201
           + +  F  ++ +  S   +PLTPS
Sbjct: 181 L-EGDFSHVSLLDPSKRAIPLTPS 203

[Close]

BLAST of Cla016988 vs. NCBI nr
Match: gi|659085385|ref|XP_008443390.1| (PREDICTED: rhodanese-like domain-containing protein 8, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 308.1 bits (788), Expect = 1.1e-80
Identity = 158/204 (77.45%), Postives = 172/204 (84.31%), Query Frame = 1


Query: 1   MWNGAHTAAMATITPIHRPTIFCTFGFTITAIKLPLRRRKWKPRQI-AVSSAPLTQPNTF 60
           MWN AH A   TIT IHRPTIFC+ GFT+ A KLPLRR KWKPRQI AVSSA LT  NT 
Sbjct: 1   MWNVAHGAHTPTITLIHRPTIFCSIGFTVAACKLPLRRGKWKPRQIIAVSSASLTHSNTV 60

Query: 61  LSVSLSNLGPNDEHPQLLPNTSEEDFVVVNFYHFVFIEDPEAEVAKHLYFTRDLDIHGRV 120
            SVSLSNLGP++EH QLLP  SEEDFVVVNFYHFVFIEDP+AEV+KHLYF RDLDIHGR+
Sbjct: 61  HSVSLSNLGPSEEHRQLLPQISEEDFVVVNFYHFVFIEDPQAEVSKHLYFMRDLDIHGRI 120

Query: 121 YLNEQGINAQYSGPSKHALAYANWLREDPRFSDILVQVSPAINGHAFPKLKLRYKPSLVQ 180
           YLNEQGINAQYSGPSKHALAYANWLREDPRF DILVQVSPAI+GHAFPKLKLRYKPSLVQ
Sbjct: 121 YLNEQGINAQYSGPSKHALAYANWLREDPRFLDILVQVSPAIDGHAFPKLKLRYKPSLVQ 180

Query: 181 VSKFTFFRMNFIVLS---LPLTPS 201
           + +  F  ++ +  S   +PLTPS
Sbjct: 181 L-EGDFSHVSLLDPSKRAIPLTPS 203

[Close]

BLAST of Cla016988 vs. NCBI nr
Match: gi|449438048|ref|XP_004136802.1| (PREDICTED: rhodanese-like domain-containing protein 8, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 304.7 bits (779), Expect = 1.2e-79
Identity = 156/204 (76.47%), Postives = 170/204 (83.33%), Query Frame = 1


Query: 1   MWNGAHTAAMATITPIHRPTIFCTFGFTITAIKLPLRRRKWKPRQI-AVSSAPLTQPNTF 60
           MWN  H A   TIT  H PTIFC+ GFT+ A KLPLRR KWKP QI AVSSA LTQ NTF
Sbjct: 1   MWNVTHGAPTPTITLTHTPTIFCSIGFTVAATKLPLRRGKWKPTQIIAVSSASLTQSNTF 60

Query: 61  LSVSLSNLGPNDEHPQLLPNTSEEDFVVVNFYHFVFIEDPEAEVAKHLYFTRDLDIHGRV 120
            SVSLSNLGP++EH QLLP+ SEEDFVVVNFYHFVFIEDP+AEV+KHLYF RDLDIHGR+
Sbjct: 61  HSVSLSNLGPSEEHRQLLPHISEEDFVVVNFYHFVFIEDPQAEVSKHLYFMRDLDIHGRI 120

Query: 121 YLNEQGINAQYSGPSKHALAYANWLREDPRFSDILVQVSPAINGHAFPKLKLRYKPSLVQ 180
           YLNEQGINAQYSGPSKHALAYANWLREDPRF DILVQVSPAIN HAFPKLKLRYKPSLVQ
Sbjct: 121 YLNEQGINAQYSGPSKHALAYANWLREDPRFLDILVQVSPAINDHAFPKLKLRYKPSLVQ 180

Query: 181 VSKFTFFRMNFIVLS---LPLTPS 201
           + +  F  ++ +  S   +PLTPS
Sbjct: 181 M-EGDFSHVSLLDSSKRAVPLTPS 203

[Close]

BLAST of Cla016988 vs. NCBI nr
Match: gi|720069065|ref|XP_010277319.1| (PREDICTED: rhodanese-like domain-containing protein 8, chloroplastic isoform X1 [Nelumbo nucifera])

HSP 1 Score: 173.7 bits (439), Expect = 3.2e-40
Identity = 80/101 (79.21%), Postives = 93/101 (92.08%), Query Frame = 1


Query: 80  TSEEDFVVVNFYHFVFIEDPEAEVAKHLYFTRDLDIHGRVYLNEQGINAQYSGPSKHALA 139
            S++DF+VVNFYHFVFI++PE EVAKHL F + LDIHGRVYLNEQGINAQYSGPS+ ALA
Sbjct: 89  ASDDDFIVVNFYHFVFIKNPEDEVAKHLSFMQGLDIHGRVYLNEQGINAQYSGPSRDALA 148

Query: 140 YANWLREDPRFSDILVQVSPAINGHAFPKLKLRYKPSLVQV 181
           Y +WL+ED RFSDILVQ+SPA+NGHAFP+LKLRYKPSLVQ+
Sbjct: 149 YIDWLKEDKRFSDILVQISPALNGHAFPRLKLRYKPSLVQL 189

[Close]

BLAST of Cla016988 vs. NCBI nr
Match: gi|720069072|ref|XP_010277321.1| (PREDICTED: rhodanese-like domain-containing protein 8, chloroplastic isoform X3 [Nelumbo nucifera])

HSP 1 Score: 173.7 bits (439), Expect = 3.2e-40
Identity = 80/101 (79.21%), Postives = 93/101 (92.08%), Query Frame = 1


Query: 80  TSEEDFVVVNFYHFVFIEDPEAEVAKHLYFTRDLDIHGRVYLNEQGINAQYSGPSKHALA 139
            S++DF+VVNFYHFVFI++PE EVAKHL F + LDIHGRVYLNEQGINAQYSGPS+ ALA
Sbjct: 89  ASDDDFIVVNFYHFVFIKNPEDEVAKHLSFMQGLDIHGRVYLNEQGINAQYSGPSRDALA 148

Query: 140 YANWLREDPRFSDILVQVSPAINGHAFPKLKLRYKPSLVQV 181
           Y +WL+ED RFSDILVQ+SPA+NGHAFP+LKLRYKPSLVQ+
Sbjct: 149 YIDWLKEDKRFSDILVQISPALNGHAFPRLKLRYKPSLVQL 189

The following BLAST results are available for this feature:

BLAST of Cla016988 vs. Swiss-Prot


Match Name	E-value	Identity	Description
STR8_ARATH	1.7e-36	75.26	Rhodanese-like domain-containing protein 8, chloroplastic OS=Arabidopsis thalian...	[more]
Y205_BACP2	8.9e-14	38.00	UPF0176 protein BPUM_0205 OS=Bacillus pumilus (strain SAFR-032) GN=BPUM_0205 PE=...	[more]
Y734_CHLPN	8.9e-14	36.46	UPF0176 protein CPn_0734/CP_0012/CPj0734/CpB0762 OS=Chlamydia pneumoniae GN=CPn_...	[more]
Y274_BACVZ	8.9e-14	39.18	UPF0176 protein RBAM_002740 OS=Bacillus velezensis (strain DSM 23117 / BGSC 10A6...	[more]
Y378_PARUW	5.8e-13	37.62	UPF0176 protein pc0378 OS=Protochlamydia amoebophila (strain UWE25) GN=pc0378 PE...	[more]

BLAST of Cla016988 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHQ3_CUCSA	8.5e-80	76.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G824960 PE=4 SV=1	[more]
V7CR20_PHAVU	6.6e-40	55.56	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G333400g PE=4 SV=1	[more]
A0A0S3QW99_PHAAN	4.3e-39	53.63	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G000500 PE=...	[more]
A0A0L9UKC3_PHAAN	4.3e-39	53.63	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g095400 PE=4 SV=1	[more]
U5FPE7_POPTR	5.6e-39	63.31	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s05490g PE=4 SV=1	[more]

BLAST of Cla016988 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659085383\|ref\|XP_008443389.1\|	1.1e-80	77.45	PREDICTED: rhodanese-like domain-containing protein 8, chloroplastic isoform X1 ...	[more]
gi\|659085385\|ref\|XP_008443390.1\|	1.1e-80	77.45	PREDICTED: rhodanese-like domain-containing protein 8, chloroplastic isoform X2 ...	[more]
gi\|449438048\|ref\|XP_004136802.1\|	1.2e-79	76.47	PREDICTED: rhodanese-like domain-containing protein 8, chloroplastic isoform X1 ...	[more]
gi\|720069065\|ref\|XP_010277319.1\|	3.2e-40	79.21	PREDICTED: rhodanese-like domain-containing protein 8, chloroplastic isoform X1 ...	[more]
gi\|720069072\|ref\|XP_010277321.1\|	3.2e-40	79.21	PREDICTED: rhodanese-like domain-containing protein 8, chloroplastic isoform X3 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009536	plastid
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla016988	Cla016988.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22778	OVARIAN CANCER GENE-2 PROTEIN-RELATED	coord: 55..180 score: 9.0
None	No IPR available	PANTHER	PTHR22778:SF18	RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 8, CHLOROPLASTIC	coord: 55..180 score: 9.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla016988	Cla97C10G198120	Watermelon (97103) v2	wmwmbB051
Cla016988	Csa3G824960	Cucumber (Chinese Long) v2	cuwmB198
Cla016988	MELO3C009853	Melon (DHL92) v3.5.1	mewmB346
Cla016988	ClCG10G015270	Watermelon (Charleston Gray)	wcgwmB051
Cla016988	CSPI03G38810	Wild cucumber (PI 183967)	cpiwmB198
Cla016988	Cucsa.338680	Cucumber (Gy14) v1	cgywmB609
Cla016988	CmaCh11G010090	Cucurbita maxima (Rimu)	cmawmB089
Cla016988	CmoCh11G010330	Cucurbita moschata (Rifu)	cmowmB080
Cla016988	Cp4.1LG04g01600	Cucurbita pepo (Zucchini)	cpewmB641
Cla016988	MELO3C009853.2	Melon (DHL92) v3.6.1	medwmB344
Cla016988	CsaV3_3G041250	Cucumber (Chinese Long) v3	cucwmB208
Cla016988	Bhi11G002465	Wax gourd	wgowmB021

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla016988	Cucumber (Gy14) v2	cgybwmB187
Cla016988	Cucumber (Gy14) v2	cgybwmB347
Cla016988	Melon (DHL92) v3.6.1	medwmB006
Cla016988	Silver-seed gourd	carwmB0249
Cla016988	Silver-seed gourd	carwmB0431
Cla016988	Cucumber (Chinese Long) v3	cucwmB393
Cla016988	Watermelon (97103) v2	wmwmbB076
Cla016988	Wax gourd	wgowmB122
Cla016988	Watermelon (97103) v1	wmwmB009
Cla016988	Cucumber (Gy14) v1	cgywmB281
Cla016988	Cucurbita maxima (Rimu)	cmawmB228
Cla016988	Cucurbita maxima (Rimu)	cmawmB257
Cla016988	Cucurbita maxima (Rimu)	cmawmB658
Cla016988	Cucurbita moschata (Rifu)	cmowmB214
Cla016988	Cucurbita moschata (Rifu)	cmowmB652
Cla016988	Wild cucumber (PI 183967)	cpiwmB376
Cla016988	Melon (DHL92) v3.5.1	mewmB008
Cla016988	Watermelon (Charleston Gray)	wcgwmB018
Cla016988	Cucumber (Chinese Long) v2	cuwmB368
Cla016988	Cucurbita pepo (Zucchini)	cpewmB167
Cla016988	Cucurbita pepo (Zucchini)	cpewmB597
Cla016988	Bottle gourd (USVL1VR-Ls)	lsiwmB181
Cla016988	Bottle gourd (USVL1VR-Ls)	lsiwmB240