Cla016917 (gene) Watermelon (97103) v1

Overview
NameCla016917
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1); contains Interpro domain(s) IPR005516 Remorin, C-terminal region
LocationChr11 : 26079997 .. 26080185 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGGACAAGCACATGATAGGCTTACGAACAAACTAGCGGCAGTAAGGCACAAAGCTGAAGAAAAGCTAGCGGCAGCAGAAGCAAAGAGAAACCGGCAGGCTGCAATAGCAGAGCAGCAAGCAGATTATATTCGCCAAACTGGTCGTGTCCCTTCTTTATTTTCTTGCTTCTATTGTTGCTCTTGA

mRNA sequence

ATGAGAGGACAAGCACATGATAGGCTTACGAACAAACTAGCGGCAGTAAGGCACAAAGCTGAAGAAAAGCTAGCGGCAGCAGAAGCAAAGAGAAACCGGCAGGCTGCAATAGCAGAGCAGCAAGCAGATTATATTCGCCAAACTGGTCGTGTCCCTTCTTTATTTTCTTGCTTCTATTGTTGCTCTTGA

Coding sequence (CDS)

ATGAGAGGACAAGCACATGATAGGCTTACGAACAAACTAGCGGCAGTAAGGCACAAAGCTGAAGAAAAGCTAGCGGCAGCAGAAGCAAAGAGAAACCGGCAGGCTGCAATAGCAGAGCAGCAAGCAGATTATATTCGCCAAACTGGTCGTGTCCCTTCTTTATTTTCTTGCTTCTATTGTTGCTCTTGA

Protein sequence

MRGQAHDRLTNKLAAVRHKAEEKLAAAEAKRNRQAAIAEQQADYIRQTGRVPSLFSCFYCCS
Homology
[Close]
BLAST of Cla016917 vs. TrEMBL
Match: A0A0A0KMA3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G264285 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.8e-26
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 1 

Query: 1  MRGQAHDRLTNKLAAVRHKAEEKLAAAEAKRNRQAAIAEQQADYIRQTGRVPSLFSCFYC 60
          MRGQAHDRLTNKLAAVRHKAEEKLAAAEAKRNRQAAIAEQQAD+IRQTGR+PSLFSCFYC
Sbjct: 8  MRGQAHDRLTNKLAAVRHKAEEKLAAAEAKRNRQAAIAEQQADHIRQTGRIPSLFSCFYC 67

Query: 61 CS 63
          CS
Sbjct: 68 CS 69

[Close]
BLAST of Cla016917 vs. TrEMBL
Match: D7TAG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g01760 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.4e-17
Identity = 46/62 (74.19%), Postives = 54/62 (87.10%), Query Frame = 1 

Query: 1   MRGQAHDRLTNKLAAVRHKAEEKLAAAEAKRNRQAAIAEQQADYIRQTGRVPSLFSCFYC 60
           +RG+AHDRL NKLAA RH+AEEK AAAEAKR+RQAA  EQQA+YIR+TGR+PS FSC+  
Sbjct: 449 IRGRAHDRLMNKLAAARHRAEEKRAAAEAKRSRQAAKTEQQAEYIRKTGRIPSSFSCWNW 508

Query: 61  CS 63
           CS
Sbjct: 509 CS 510

[Close]
BLAST of Cla016917 vs. TrEMBL
Match: A0A059AFE0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01777 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.4e-17
Identity = 44/61 (72.13%), Postives = 53/61 (86.89%), Query Frame = 1 

Query: 1   MRGQAHDRLTNKLAAVRHKAEEKLAAAEAKRNRQAAIAEQQADYIRQTGRVPSLFSCFYC 60
           +RGQAHD+LT+KLA +RHKAEEK AAAEAKRNRQA  AE+QA+YIR+TGR+PS   C +C
Sbjct: 445 IRGQAHDKLTSKLATLRHKAEEKRAAAEAKRNRQAVKAEEQAEYIRKTGRIPSFSICSWC 504

Query: 61  C 62
           C
Sbjct: 505 C 505

[Close]
BLAST of Cla016917 vs. TrEMBL
Match: W9RFB3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002462 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.1e-17
Identity = 45/61 (73.77%), Postives = 53/61 (86.89%), Query Frame = 1 

Query: 1   MRGQAHDRLTNKLAAVRHKAEEKLAAAEAKRNRQAAIAEQQADYIRQTGRVPSLFSCFYC 60
           MRG+AHD+L NKLAA RH+AEEK AAAEAKRN+QAA  EQQA+YIR+TGR+PSL SC+  
Sbjct: 451 MRGRAHDKLMNKLAAARHRAEEKRAAAEAKRNQQAARTEQQAEYIRRTGRIPSLLSCWNW 510

Query: 61  C 62
           C
Sbjct: 511 C 511

[Close]
BLAST of Cla016917 vs. TrEMBL
Match: H6X1M3_9ROSI (Remorin-3b (Fragment) OS=Dimocarpus longan PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 7.0e-17
Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = 1 

Query: 1  MRGQAHDRLTNKLAAVRHKAEEKLAAAEAKRNRQAAIAEQQADYIRQTGRVPSLFSCFYC 60
          +RG+AHD+L NKLAA RHKAEEK A AEAKRNRQAA  EQQA++IR+TGR+PS FSC+  
Sbjct: 6  IRGRAHDKLMNKLAAARHKAEEKRAEAEAKRNRQAAKTEQQAEFIRRTGRIPSSFSCWSW 65

Query: 61 CS 63
          CS
Sbjct: 66 CS 67

[Close]
BLAST of Cla016917 vs. NCBI nr
Match: gi|449445288|ref|XP_004140405.1| (PREDICTED: uncharacterized protein LOC101221140 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 4.1e-26
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 1 

Query: 1   MRGQAHDRLTNKLAAVRHKAEEKLAAAEAKRNRQAAIAEQQADYIRQTGRVPSLFSCFYC 60
           MRGQAHDRLTNKLAAVRHKAEEKLAAAEAKRNRQAAIAEQQAD+IRQTGR+PSLFSCFYC
Sbjct: 457 MRGQAHDRLTNKLAAVRHKAEEKLAAAEAKRNRQAAIAEQQADHIRQTGRIPSLFSCFYC 516

Query: 61  CS 63
           CS
Sbjct: 517 CS 518

[Close]
BLAST of Cla016917 vs. NCBI nr
Match: gi|700195618|gb|KGN50795.1| (hypothetical protein Csa_5G264285 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 4.1e-26
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 1 

Query: 1  MRGQAHDRLTNKLAAVRHKAEEKLAAAEAKRNRQAAIAEQQADYIRQTGRVPSLFSCFYC 60
          MRGQAHDRLTNKLAAVRHKAEEKLAAAEAKRNRQAAIAEQQAD+IRQTGR+PSLFSCFYC
Sbjct: 8  MRGQAHDRLTNKLAAVRHKAEEKLAAAEAKRNRQAAIAEQQADHIRQTGRIPSLFSCFYC 67

Query: 61 CS 63
          CS
Sbjct: 68 CS 69

[Close]
BLAST of Cla016917 vs. NCBI nr
Match: gi|659120515|ref|XP_008460230.1| (PREDICTED: uncharacterized protein LOC103499112 [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 4.1e-26
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 1 

Query: 1   MRGQAHDRLTNKLAAVRHKAEEKLAAAEAKRNRQAAIAEQQADYIRQTGRVPSLFSCFYC 60
           MRGQAHDRLTNKLAAVRHKAEEKLAAAEAKRNRQAAIAEQQAD+IRQTGR+PSLFSCFYC
Sbjct: 459 MRGQAHDRLTNKLAAVRHKAEEKLAAAEAKRNRQAAIAEQQADHIRQTGRIPSLFSCFYC 518

Query: 61  CS 63
           CS
Sbjct: 519 CS 520

[Close]
BLAST of Cla016917 vs. NCBI nr
Match: gi|719963726|ref|XP_010250558.1| (PREDICTED: uncharacterized protein LOC104592772 isoform X1 [Nelumbo nucifera])

HSP 1 Score: 97.4 bits (241), Expect = 9.1e-18
Identity = 48/62 (77.42%), Postives = 54/62 (87.10%), Query Frame = 1 

Query: 1   MRGQAHDRLTNKLAAVRHKAEEKLAAAEAKRNRQAAIAEQQADYIRQTGRVPSLFS-CFY 60
           MRG+AHD+L NKLAA RHKAEEK AAAEAKRNRQAA  EQQA+YIR+TGR+PS FS C +
Sbjct: 459 MRGRAHDKLMNKLAAARHKAEEKRAAAEAKRNRQAAKTEQQAEYIRRTGRIPSSFSCCSW 518

Query: 61  CC 62
           CC
Sbjct: 519 CC 520

[Close]
BLAST of Cla016917 vs. NCBI nr
Match: gi|719963730|ref|XP_010250566.1| (PREDICTED: uncharacterized protein LOC104592772 isoform X2 [Nelumbo nucifera])

HSP 1 Score: 97.4 bits (241), Expect = 9.1e-18
Identity = 48/62 (77.42%), Postives = 54/62 (87.10%), Query Frame = 1 

Query: 1   MRGQAHDRLTNKLAAVRHKAEEKLAAAEAKRNRQAAIAEQQADYIRQTGRVPSLFS-CFY 60
           MRG+AHD+L NKLAA RHKAEEK AAAEAKRNRQAA  EQQA+YIR+TGR+PS FS C +
Sbjct: 438 MRGRAHDKLMNKLAAARHKAEEKRAAAEAKRNRQAAKTEQQAEYIRRTGRIPSSFSCCSW 497

Query: 61  CC 62
           CC
Sbjct: 498 CC 499

The following BLAST results are available for this feature:
BLAST of Cla016917 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMA3_CUCSA2.8e-2696.77Uncharacterized protein OS=Cucumis sativus GN=Csa_5G264285 PE=4 SV=1[more]
D7TAG1_VITVI2.4e-1774.19Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g01760 PE=4 SV=... [more]
A0A059AFE0_EUCGR2.4e-1772.13Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01777 PE=4 SV=1[more]
W9RFB3_9ROSA4.1e-1773.77Uncharacterized protein OS=Morus notabilis GN=L484_002462 PE=4 SV=1[more]
H6X1M3_9ROSI7.0e-1772.58Remorin-3b (Fragment) OS=Dimocarpus longan PE=2 SV=1[more]
BLAST of Cla016917 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449445288|ref|XP_004140405.1|4.1e-2696.77PREDICTED: uncharacterized protein LOC101221140 [Cucumis sativus][more]
gi|700195618|gb|KGN50795.1|4.1e-2696.77hypothetical protein Csa_5G264285 [Cucumis sativus][more]
gi|659120515|ref|XP_008460230.1|4.1e-2696.77PREDICTED: uncharacterized protein LOC103499112 [Cucumis melo][more]
gi|719963726|ref|XP_010250558.1|9.1e-1877.42PREDICTED: uncharacterized protein LOC104592772 isoform X1 [Nelumbo nucifera][more]
gi|719963730|ref|XP_010250566.1|9.1e-1877.42PREDICTED: uncharacterized protein LOC104592772 isoform X2 [Nelumbo nucifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005516Remorin_C
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005886 plasma membrane
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU05100watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU40129watermelon EST collection version 2.0transcribed_cluster
WMU52773watermelon EST collection version 2.0transcribed_cluster
WMU67834watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla016917Cla016917.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU05100WMU05100transcribed_cluster
WMU67834WMU67834transcribed_cluster
WMU40129WMU40129transcribed_cluster
WMU52773WMU52773transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005516Remorin, C-terminalPFAMPF03763Remorin_Ccoord: 1..53
score: 3.4
NoneNo IPR availableunknownCoilCoilcoord: 10..39
scor
NoneNo IPR availablePANTHERPTHR31471FAMILY NOT NAMEDcoord: 1..61
score: 5.1
NoneNo IPR availablePANTHERPTHR31471:SF1SUBFAMILY NOT NAMEDcoord: 1..61
score: 5.1