Cla016628 (gene) Watermelon (97103) v1

NameCla016628
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionAuxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein
LocationChr11 : 23348490 .. 23348783 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATTCGTCTACCTTCTCTTCTCTTTAGTGCTGTGAAAATTTTGAGAATGCAGTCTGTTTCTGCACAATGTCAATCGAATGTTCCCAAAGGTCATGTTGCAGTGTACGTGGGAGAAATTCAGAGGAAGCGGTTTTTGGTTCCGATTTCTTACTTGAACCATCCTTCATTTGTGAATTTTCTCAGTAGGGCTGTAGAAGAGTTTGGATTCAACCATCCAACAGGAGGTTTGACCATTCCTTGCAAAGAAGAAGCCTTCATTGATGCCACTTCTAGACTGCACACTTCATGA

mRNA sequence

ATGGGAATTCGTCTACCTTCTCTTCTCTTTAGTGCTGTGAAAATTTTGAGAATGCAGTCTGTTTCTGCACAATGTCAATCGAATGTTCCCAAAGGTCATGTTGCAGTGTACGTGGGAGAAATTCAGAGGAAGCGGTTTTTGGTTCCGATTTCTTACTTGAACCATCCTTCATTTGTGAATTTTCTCAGTAGGGCTGTAGAAGAGTTTGGATTCAACCATCCAACAGGAGGTTTGACCATTCCTTGCAAAGAAGAAGCCTTCATTGATGCCACTTCTAGACTGCACACTTCATGA

Coding sequence (CDS)

ATGGGAATTCGTCTACCTTCTCTTCTCTTTAGTGCTGTGAAAATTTTGAGAATGCAGTCTGTTTCTGCACAATGTCAATCGAATGTTCCCAAAGGTCATGTTGCAGTGTACGTGGGAGAAATTCAGAGGAAGCGGTTTTTGGTTCCGATTTCTTACTTGAACCATCCTTCATTTGTGAATTTTCTCAGTAGGGCTGTAGAAGAGTTTGGATTCAACCATCCAACAGGAGGTTTGACCATTCCTTGCAAAGAAGAAGCCTTCATTGATGCCACTTCTAGACTGCACACTTCATGA

Protein sequence

MGIRLPSLLFSAVKILRMQSVSAQCQSNVPKGHVAVYVGEIQRKRFLVPISYLNHPSFVNFLSRAVEEFGFNHPTGGLTIPCKEEAFIDATSRLHTS
BLAST of Cla016628 vs. Swiss-Prot
Match: SAU23_ARATH (Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana GN=SAUR23 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.3e-22
Identity = 55/87 (63.22%), Postives = 62/87 (71.26%), Query Frame = 1

Query: 9  LFSAVKILRMQSVSAQCQSNVPKGHVAVYVGEIQRKRFLVPISYLNHPSFVNFLSRAVEE 68
          L  A KIL   S SA   S  PKG +AVYVGE Q+KR+LVP+SYLN PSF   LS++ EE
Sbjct: 7  LLVAKKIL---SRSAAAVSAPPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEEE 66

Query: 69 FGFNHPTGGLTIPCKEEAFIDATSRLH 96
          FGF+HP GGLTIPC E+ FI+ TSRLH
Sbjct: 67 FGFDHPMGGLTIPCPEDTFINVTSRLH 90

BLAST of Cla016628 vs. Swiss-Prot
Match: SAU24_ARATH (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana GN=SAUR24 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.8e-21
Identity = 53/86 (61.63%), Postives = 60/86 (69.77%), Query Frame = 1

Query: 9  LFSAVKILRMQSVSAQCQSNVPKGHVAVYVGEIQRKRFLVPISYLNHPSFVNFLSRAVEE 68
          L  A KIL   S S    S  PKG +AVYVGE Q+KR+LVP+SYLN PSF   LS++ EE
Sbjct: 7  LLGAKKIL---SRSTGAGSAAPKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEE 66

Query: 69 FGFNHPTGGLTIPCKEEAFIDATSRL 95
          FGF+HP GGLTIPC E+ FI+ TSRL
Sbjct: 67 FGFDHPMGGLTIPCPEDTFINVTSRL 89

BLAST of Cla016628 vs. Swiss-Prot
Match: SAU20_ARATH (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana GN=SAUR20 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.8e-21
Identity = 52/85 (61.18%), Postives = 60/85 (70.59%), Query Frame = 1

Query: 9  LFSAVKILRMQSVSAQCQSNVPKGHVAVYVGEIQRKRFLVPISYLNHPSFVNFLSRAVEE 68
          L  A KIL   + +A   S  PKG +AVYVGE Q+KR+LVPISYLN PSF   LS++ EE
Sbjct: 7  LLGAKKILSRSTTAA---SAAPKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEE 66

Query: 69 FGFNHPTGGLTIPCKEEAFIDATSR 94
          FGF+HP GGLTIPC E+ FI+ TSR
Sbjct: 67 FGFDHPMGGLTIPCPEDTFINVTSR 88

BLAST of Cla016628 vs. Swiss-Prot
Match: SAU22_ARATH (Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana GN=SAUR22 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 6.2e-21
Identity = 52/86 (60.47%), Postives = 60/86 (69.77%), Query Frame = 1

Query: 9  LFSAVKILRMQSVSAQCQSNVPKGHVAVYVGEIQRKRFLVPISYLNHPSFVNFLSRAVEE 68
          L  A KIL   S S    S  PKG +AVYVGE Q+KR+LVP+SYLN PSF   LS++ +E
Sbjct: 7  LLGAKKIL---SRSTAAVSAAPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEDE 66

Query: 69 FGFNHPTGGLTIPCKEEAFIDATSRL 95
          FGF+HP GGLTIPC E+ FI+ TSRL
Sbjct: 67 FGFDHPMGGLTIPCHEDTFINVTSRL 89

BLAST of Cla016628 vs. Swiss-Prot
Match: SAU21_ARATH (Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana GN=SAUR21 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 8.0e-21
Identity = 51/86 (59.30%), Postives = 60/86 (69.77%), Query Frame = 1

Query: 9  LFSAVKILRMQSVSAQCQSNVPKGHVAVYVGEIQRKRFLVPISYLNHPSFVNFLSRAVEE 68
          L  A KIL   + SA      PKG +AVYVGE Q+KR+LVP+SYL+ PSF   LS++ EE
Sbjct: 7  LLGAKKILSRSTASA-----APKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEE 66

Query: 69 FGFNHPTGGLTIPCKEEAFIDATSRL 95
          FGF+HP GGLTIPC E+ FI+ TSRL
Sbjct: 67 FGFDHPMGGLTIPCPEDTFINVTSRL 87

BLAST of Cla016628 vs. TrEMBL
Match: A0A0A0LIZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258710 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.7e-39
Identity = 79/97 (81.44%), Postives = 89/97 (91.75%), Query Frame = 1

Query: 1  MGIRLPSLLFSAVKILRMQSVSAQCQSNVPKGHVAVYVGEIQRKRFLVPISYLNHPSFVN 60
          MG RLPS+LFSA +IL+ QS+S +CQS+VPKGH+AVYVGEIQ+KRFLVPISYLNHPSF++
Sbjct: 1  MGFRLPSILFSAKQILKAQSISGRCQSSVPKGHIAVYVGEIQKKRFLVPISYLNHPSFLD 60

Query: 61 FLSRAVEEFGFNHPTGGLTIPCKEEAFIDATSRLHTS 98
           L RA EEFGFNHPTGGLTIPCKEEAFID TSRLHTS
Sbjct: 61 LLRRAEEEFGFNHPTGGLTIPCKEEAFIDVTSRLHTS 97

BLAST of Cla016628 vs. TrEMBL
Match: A0A0A0LM65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258730 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.9e-38
Identity = 79/97 (81.44%), Postives = 88/97 (90.72%), Query Frame = 1

Query: 1  MGIRLPSLLFSAVKILRMQSVSAQCQSNVPKGHVAVYVGEIQRKRFLVPISYLNHPSFVN 60
          MGIRLPS+L SA +IL+M++VS +CQS+VPKGH+ VYVGE QRKRFLVPISYLNHPSFVN
Sbjct: 1  MGIRLPSVLLSAKQILKMKTVSTRCQSDVPKGHIPVYVGENQRKRFLVPISYLNHPSFVN 60

Query: 61 FLSRAVEEFGFNHPTGGLTIPCKEEAFIDATSRLHTS 98
           LSRA EEFGF+HPTGGLTIPCKEEAFID TSRLH S
Sbjct: 61 LLSRAEEEFGFSHPTGGLTIPCKEEAFIDVTSRLHIS 97

BLAST of Cla016628 vs. TrEMBL
Match: A0A0A0LLF7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258750 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.9e-37
Identity = 78/97 (80.41%), Postives = 86/97 (88.66%), Query Frame = 1

Query: 1  MGIRLPSLLFSAVKILRMQSVSAQCQSNVPKGHVAVYVGEIQRKRFLVPISYLNHPSFVN 60
          MGIR PS+L SA +IL+M+SVS +CQS+VPKGH+ VYVGE QRKRF VPISYLNHPSFVN
Sbjct: 1  MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVN 60

Query: 61 FLSRAVEEFGFNHPTGGLTIPCKEEAFIDATSRLHTS 98
           LSRA EEFGF+HPTGGLTIPCKEEAFID TSRLH S
Sbjct: 61 LLSRAEEEFGFSHPTGGLTIPCKEEAFIDVTSRLHIS 97

BLAST of Cla016628 vs. TrEMBL
Match: A0A0A0LPH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258670 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.9e-37
Identity = 73/97 (75.26%), Postives = 89/97 (91.75%), Query Frame = 1

Query: 1  MGIRLPSLLFSAVKILRMQSVSAQCQSNVPKGHVAVYVGEIQRKRFLVPISYLNHPSFVN 60
          MGIR+PSLL +A +I RMQSVS +C SN+PKGH+AVYVGEI+RKRF+VP+SYLNHP+F++
Sbjct: 1  MGIRMPSLLLNAKQIFRMQSVSTRCHSNIPKGHIAVYVGEIERKRFVVPVSYLNHPTFLS 60

Query: 61 FLSRAVEEFGFNHPTGGLTIPCKEEAFIDATSRLHTS 98
           L+RA EEFGFNHP+GGLTIPCKE+AFID TS+LHTS
Sbjct: 61 LLNRAEEEFGFNHPSGGLTIPCKEDAFIDLTSKLHTS 97

BLAST of Cla016628 vs. TrEMBL
Match: A0A0A0LPG7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258620 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 4.4e-34
Identity = 70/97 (72.16%), Postives = 83/97 (85.57%), Query Frame = 1

Query: 1  MGIRLPSLLFSAVKILRMQSVSAQCQSNVPKGHVAVYVGEIQRKRFLVPISYLNHPSFVN 60
          MGIRLPS+L    +IL++Q VS + +S++PKGH+AVYVGEIQ KRF+VPIS+LNHPSF+N
Sbjct: 1  MGIRLPSILLHTKQILKIQGVSTKVKSDIPKGHIAVYVGEIQTKRFVVPISFLNHPSFLN 60

Query: 61 FLSRAVEEFGFNHPTGGLTIPCKEEAFIDATSRLHTS 98
           L RA EEFGFNHP GGLTIPC+EE FID TSRLHTS
Sbjct: 61 LLKRAEEEFGFNHPMGGLTIPCREETFIDLTSRLHTS 97

BLAST of Cla016628 vs. NCBI nr
Match: gi|449458550|ref|XP_004147010.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 3.8e-39
Identity = 79/97 (81.44%), Postives = 89/97 (91.75%), Query Frame = 1

Query: 1  MGIRLPSLLFSAVKILRMQSVSAQCQSNVPKGHVAVYVGEIQRKRFLVPISYLNHPSFVN 60
          MG RLPS+LFSA +IL+ QS+S +CQS+VPKGH+AVYVGEIQ+KRFLVPISYLNHPSF++
Sbjct: 1  MGFRLPSILFSAKQILKAQSISGRCQSSVPKGHIAVYVGEIQKKRFLVPISYLNHPSFLD 60

Query: 61 FLSRAVEEFGFNHPTGGLTIPCKEEAFIDATSRLHTS 98
           L RA EEFGFNHPTGGLTIPCKEEAFID TSRLHTS
Sbjct: 61 LLRRAEEEFGFNHPTGGLTIPCKEEAFIDVTSRLHTS 97

BLAST of Cla016628 vs. NCBI nr
Match: gi|659115590|ref|XP_008457631.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis melo])

HSP 1 Score: 166.4 bits (420), Expect = 2.5e-38
Identity = 77/97 (79.38%), Postives = 88/97 (90.72%), Query Frame = 1

Query: 1  MGIRLPSLLFSAVKILRMQSVSAQCQSNVPKGHVAVYVGEIQRKRFLVPISYLNHPSFVN 60
          MG RLPS+LFSA +IL+ QS+S +CQS+VPKGH+AVYVGE+Q+ RFLVPISYLNHPSF++
Sbjct: 1  MGFRLPSILFSAKQILKAQSISGRCQSSVPKGHIAVYVGEVQKTRFLVPISYLNHPSFLD 60

Query: 61 FLSRAVEEFGFNHPTGGLTIPCKEEAFIDATSRLHTS 98
           L RA EEFGFNHPTGGLTIPCKEEAFID TSRLHTS
Sbjct: 61 LLRRAEEEFGFNHPTGGLTIPCKEEAFIDVTSRLHTS 97

BLAST of Cla016628 vs. NCBI nr
Match: gi|778669591|ref|XP_011649272.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 5.5e-38
Identity = 79/97 (81.44%), Postives = 88/97 (90.72%), Query Frame = 1

Query: 1  MGIRLPSLLFSAVKILRMQSVSAQCQSNVPKGHVAVYVGEIQRKRFLVPISYLNHPSFVN 60
          MGIRLPS+L SA +IL+M++VS +CQS+VPKGH+ VYVGE QRKRFLVPISYLNHPSFVN
Sbjct: 1  MGIRLPSVLLSAKQILKMKTVSTRCQSDVPKGHIPVYVGENQRKRFLVPISYLNHPSFVN 60

Query: 61 FLSRAVEEFGFNHPTGGLTIPCKEEAFIDATSRLHTS 98
           LSRA EEFGF+HPTGGLTIPCKEEAFID TSRLH S
Sbjct: 61 LLSRAEEEFGFSHPTGGLTIPCKEEAFIDVTSRLHIS 97

BLAST of Cla016628 vs. NCBI nr
Match: gi|659115594|ref|XP_008457634.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis melo])

HSP 1 Score: 163.3 bits (412), Expect = 2.1e-37
Identity = 78/97 (80.41%), Postives = 88/97 (90.72%), Query Frame = 1

Query: 1  MGIRLPSLLFSAVKILRMQSVSAQCQSNVPKGHVAVYVGEIQRKRFLVPISYLNHPSFVN 60
          MGIRLPS+L SA +IL+M++VS +CQS+VPKGH+ VYVGE QRKRFLVPISYLNHPSFV+
Sbjct: 1  MGIRLPSVLLSAKQILKMKTVSTRCQSDVPKGHIPVYVGENQRKRFLVPISYLNHPSFVH 60

Query: 61 FLSRAVEEFGFNHPTGGLTIPCKEEAFIDATSRLHTS 98
           LSRA EEFGF+HPTGGLTIPCKEEAFID TSRLH S
Sbjct: 61 LLSRAEEEFGFSHPTGGLTIPCKEEAFIDVTSRLHIS 97

BLAST of Cla016628 vs. NCBI nr
Match: gi|778669580|ref|XP_011649270.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 2.8e-37
Identity = 73/97 (75.26%), Postives = 89/97 (91.75%), Query Frame = 1

Query: 1  MGIRLPSLLFSAVKILRMQSVSAQCQSNVPKGHVAVYVGEIQRKRFLVPISYLNHPSFVN 60
          MGIR+PSLL +A +I RMQSVS +C SN+PKGH+AVYVGEI+RKRF+VP+SYLNHP+F++
Sbjct: 1  MGIRMPSLLLNAKQIFRMQSVSTRCHSNIPKGHIAVYVGEIERKRFVVPVSYLNHPTFLS 60

Query: 61 FLSRAVEEFGFNHPTGGLTIPCKEEAFIDATSRLHTS 98
           L+RA EEFGFNHP+GGLTIPCKE+AFID TS+LHTS
Sbjct: 61 LLNRAEEEFGFNHPSGGLTIPCKEDAFIDLTSKLHTS 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
SAU23_ARATH3.3e-2263.22Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana GN=SAUR23 PE=2 SV=1[more]
SAU24_ARATH2.8e-2161.63Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana GN=SAUR24 PE=2 SV=1[more]
SAU20_ARATH2.8e-2161.18Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana GN=SAUR20 PE=2 SV=1[more]
SAU22_ARATH6.2e-2160.47Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana GN=SAUR22 PE=2 SV=1[more]
SAU21_ARATH8.0e-2159.30Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana GN=SAUR21 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LIZ4_CUCSA2.7e-3981.44Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258710 PE=4 SV=1[more]
A0A0A0LM65_CUCSA3.9e-3881.44Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258730 PE=4 SV=1[more]
A0A0A0LLF7_CUCSA1.9e-3780.41Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258750 PE=4 SV=1[more]
A0A0A0LPH3_CUCSA1.9e-3775.26Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258670 PE=4 SV=1[more]
A0A0A0LPG7_CUCSA4.4e-3472.16Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258620 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449458550|ref|XP_004147010.1|3.8e-3981.44PREDICTED: auxin-induced protein 15A-like [Cucumis sativus][more]
gi|659115590|ref|XP_008457631.1|2.5e-3879.38PREDICTED: auxin-induced protein 15A-like [Cucumis melo][more]
gi|778669591|ref|XP_011649272.1|5.5e-3881.44PREDICTED: auxin-induced protein 15A-like [Cucumis sativus][more]
gi|659115594|ref|XP_008457634.1|2.1e-3780.41PREDICTED: auxin-induced protein 15A-like [Cucumis melo][more]
gi|778669580|ref|XP_011649270.1|2.8e-3775.26PREDICTED: auxin-induced protein 15A-like [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003676SAUR_fam
Vocabulary: Biological Process
TermDefinition
GO:0009733response to auxin
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009733 response to auxin
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla016628Cla016628.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003676Small auxin-up RNAPFAMPF02519Auxin_induciblecoord: 17..93
score: 9.1
NoneNo IPR availablePANTHERPTHR31929FAMILY NOT NAMEDcoord: 2..97
score: 5.4
NoneNo IPR availablePANTHERPTHR31929:SF3SUBFAMILY NOT NAMEDcoord: 2..97
score: 5.4