Cla016620 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla016620
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein
Location	Chr11 : 23308654 .. 23308941 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTTCGTTTTGCAAAAATTGTAAATGCTGTGCATAATCTAGGACTTTCTTCTCTGGCAACAAACCAAGAATCATCAATTGTCCGCAAAGGCTATTGTGCTGTTTATGTTGGAGAGAGCCAAAGGAAACGGTTTGTGATTCCAATAGCTTACTTGAATCAGCCGTTCTTTAAAGATTTGCTCAGTCGAGCTGAAGAAGAATTTGGTTACAATCACCCCATGGGAGGTCTCACCATTCCCTGCAGTGAGGATACATTCATCGATCTCATCTCTCATTTGCATTAG

mRNA sequence

ATGGGTTTTCGTTTTGCAAAAATTGTAAATGCTGTGCATAATCTAGGACTTTCTTCTCTGGCAACAAACCAAGAATCATCAATTGTCCGCAAAGGCTATTGTGCTGTTTATGTTGGAGAGAGCCAAAGGAAACGGTTTGTGATTCCAATAGCTTACTTGAATCAGCCGTTCTTTAAAGATTTGCTCAGTCGAGCTGAAGAAGAATTTGGTTACAATCACCCCATGGGAGGTCTCACCATTCCCTGCAGTGAGGATACATTCATCGATCTCATCTCTCATTTGCATTAG

Coding sequence (CDS)

ATGGGTTTTCGTTTTGCAAAAATTGTAAATGCTGTGCATAATCTAGGACTTTCTTCTCTGGCAACAAACCAAGAATCATCAATTGTCCGCAAAGGCTATTGTGCTGTTTATGTTGGAGAGAGCCAAAGGAAACGGTTTGTGATTCCAATAGCTTACTTGAATCAGCCGTTCTTTAAAGATTTGCTCAGTCGAGCTGAAGAAGAATTTGGTTACAATCACCCCATGGGAGGTCTCACCATTCCCTGCAGTGAGGATACATTCATCGATCTCATCTCTCATTTGCATTAG

Protein sequence

MGFRFAKIVNAVHNLGLSSLATNQESSIVRKGYCAVYVGESQRKRFVIPIAYLNQPFFKDLLSRAEEEFGYNHPMGGLTIPCSEDTFIDLISHLH

Homology

[Close]

BLAST of Cla016620 vs. Swiss-Prot
Match: SAU23_ARATH (Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana GN=SAUR23 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.2e-22
Identity = 45/65 (69.23%), Postives = 57/65 (87.69%), Query Frame = 1


Query: 31 KGYCAVYVGESQRKRFVIPIAYLNQPFFKDLLSRAEEEFGYNHPMGGLTIPCSEDTFIDL 90
          KG+ AVYVGESQ+KR+++P++YLNQP F+ LLS++EEEFG++HPMGGLTIPC EDTFI++
Sbjct: 26 KGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEEEFGFDHPMGGLTIPCPEDTFINV 85

Query: 91 ISHLH 96
           S LH
Sbjct: 86 TSRLH 90

[Close]

BLAST of Cla016620 vs. Swiss-Prot
Match: SAU21_ARATH (Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana GN=SAUR21 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.2e-22
Identity = 46/80 (57.50%), Postives = 62/80 (77.50%), Query Frame = 1


Query: 15 LGLSSLATNQESSIVRKGYCAVYVGESQRKRFVIPIAYLNQPFFKDLLSRAEEEFGYNHP 74
          LG   + +   +S   KG+ AVYVGESQ+KR+++P++YL+QP F+ LLS++EEEFG++HP
Sbjct: 8  LGAKKILSRSTASAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEFGFDHP 67

Query: 75 MGGLTIPCSEDTFIDLISHL 95
          MGGLTIPC EDTFI++ S L
Sbjct: 68 MGGLTIPCPEDTFINVTSRL 87

[Close]

BLAST of Cla016620 vs. Swiss-Prot
Match: AX10A_SOYBN (Auxin-induced protein X10A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-21
Identity = 55/98 (56.12%), Postives = 67/98 (68.37%), Query Frame = 1


Query: 1  MGFRFAKIVNAVHNLGLSSLATNQESSI---VRKGYCAVYVGESQRKRFVIPIAYLNQPF 60
          MGFR   I         +S+A NQ SS    V KGY  VYVG+   +RF+IP++YLNQP 
Sbjct: 1  MGFRLPGIRK-------TSIAANQASSKSVEVPKGYLVVYVGDKM-RRFLIPVSYLNQPS 60

Query: 61 FKDLLSRAEEEFGYNHPMGGLTIPCSEDTFIDLISHLH 96
          F+DLL++AEEEFGY+HPMGGLTIPC ED F+ + SHL+
Sbjct: 61 FQDLLNQAEEEFGYDHPMGGLTIPCKEDEFLTVTSHLN 90

[Close]

BLAST of Cla016620 vs. Swiss-Prot
Match: SAU24_ARATH (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana GN=SAUR24 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-21
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 1


Query: 27 SIVRKGYCAVYVGESQRKRFVIPIAYLNQPFFKDLLSRAEEEFGYNHPMGGLTIPCSEDT 86
          S   KG+ AVYVGESQ+KR+++P++YLNQP F+ LLS++EEEFG++HPMGGLTIPC EDT
Sbjct: 22 SAAPKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEEFGFDHPMGGLTIPCPEDT 81

Query: 87 FIDLISHL 95
          FI++ S L
Sbjct: 82 FINVTSRL 89

[Close]

BLAST of Cla016620 vs. Swiss-Prot
Match: A10A5_SOYBN (Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.1e-21
Identity = 54/98 (55.10%), Postives = 68/98 (69.39%), Query Frame = 1


Query: 1  MGFRFAKIVNAVHNLGLSSLATNQESSI---VRKGYCAVYVGESQRKRFVIPIAYLNQPF 60
          MGFR A IV        +S  T Q +S    V KGY AVYVG+  R RF IP++YLN+P 
Sbjct: 1  MGFRIAGIVRR------TSFYTTQAASKRVDVPKGYAAVYVGDKMR-RFTIPVSYLNEPS 60

Query: 61 FKDLLSRAEEEFGYNHPMGGLTIPCSEDTFIDLISHLH 96
          F++LLS+AEEEFGY+HPMGGLTIPC E+ F+++ +HL+
Sbjct: 61 FQELLSQAEEEFGYDHPMGGLTIPCKEEEFLNVTAHLN 91

[Close]

BLAST of Cla016620 vs. TrEMBL
Match: A0A0A0LM55_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258630 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 4.3e-42
Identity = 85/95 (89.47%), Postives = 90/95 (94.74%), Query Frame = 1


Query: 1  MGFRFAKIVNAVHNLGLSSLATNQESSIVRKGYCAVYVGESQRKRFVIPIAYLNQPFFKD 60
          MGFR AKIVNAVHN+GLSSLATNQE SIVRKGYCAVYVGESQRKRFVIPI+YLN+PFFKD
Sbjct: 1  MGFRVAKIVNAVHNIGLSSLATNQEPSIVRKGYCAVYVGESQRKRFVIPISYLNRPFFKD 60

Query: 61 LLSRAEEEFGYNHPMGGLTIPCSEDTFIDLISHLH 96
          LL +AEEEFGYNHP GGLTIPCS+DTFI LISHLH
Sbjct: 61 LLCQAEEEFGYNHPTGGLTIPCSDDTFIGLISHLH 95

[Close]

BLAST of Cla016620 vs. TrEMBL
Match: A0A0A0LIY4_CUCSA (SAUR family protein OS=Cucumis sativus GN=Csa_2G258610 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 4.3e-34
Identity = 70/95 (73.68%), Postives = 82/95 (86.32%), Query Frame = 1


Query: 1  MGFRFAKIVNAVHNLGLSSLATNQESSIVRKGYCAVYVGESQRKRFVIPIAYLNQPFFKD 60
          MGFR  ++VN + N+ LSSL T+  SS +RKGYCAVYVGE+Q+KRFVIPIAYLN+PFFKD
Sbjct: 1  MGFRLGRMVNVMQNIRLSSLTTHHGSSAIRKGYCAVYVGENQKKRFVIPIAYLNEPFFKD 60

Query: 61 LLSRAEEEFGYNHPMGGLTIPCSEDTFIDLISHLH 96
          LLS+  EEFGYNHPMGGLTIPCS DTF+DLIS L+
Sbjct: 61 LLSQVGEEFGYNHPMGGLTIPCSNDTFMDLISRLN 95

[Close]

BLAST of Cla016620 vs. TrEMBL
Match: M5W086_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013844mg PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.5e-26
Identity = 62/98 (63.27%), Postives = 76/98 (77.55%), Query Frame = 1


Query: 1  MGFRFAKIVNA----VHNLGLSSLATNQESSIVRKGYCAVYVGESQRKRFVIPIAYLNQP 60
          MGFR   IVNA    + +L  SS   + ++  + KGY AVYVGESQ+KRFVIPI+YLN+P
Sbjct: 1  MGFRLPAIVNAKRSLIRSLSSSSQTADSKTLDIPKGYLAVYVGESQKKRFVIPISYLNEP 60

Query: 61 FFKDLLSRAEEEFGYNHPMGGLTIPCSEDTFIDLISHL 95
           F DLLS+AEEEFGY+HPMGG+TIPCSE+TF+DL S L
Sbjct: 61 LFLDLLSQAEEEFGYDHPMGGITIPCSENTFLDLTSRL 98

[Close]

BLAST of Cla016620 vs. TrEMBL
Match: M5W753_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013847mg PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 9.7e-26
Identity = 62/98 (63.27%), Postives = 75/98 (76.53%), Query Frame = 1


Query: 1  MGFRFAKIVNA----VHNLGLSSLATNQESSIVRKGYCAVYVGESQRKRFVIPIAYLNQP 60
          MGFR   IVNA    + +L  SS   + ++    KGY AVYVGESQ+KRFVIPI+YLN+P
Sbjct: 1  MGFRLPAIVNAKRSLIRSLSSSSQTADSKTLDFPKGYFAVYVGESQKKRFVIPISYLNEP 60

Query: 61 FFKDLLSRAEEEFGYNHPMGGLTIPCSEDTFIDLISHL 95
           F DLLS+AEEEFGY+HPMGG+TIPCSE+TF+DL S L
Sbjct: 61 LFLDLLSQAEEEFGYDHPMGGITIPCSENTFLDLTSRL 98

[Close]

BLAST of Cla016620 vs. TrEMBL
Match: M5VP01_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013863mg PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.6e-25
Identity = 62/97 (63.92%), Postives = 75/97 (77.32%), Query Frame = 1


Query: 1  MGFRFAKIVNAVHNLGLS---SLATNQESSIVRKGYCAVYVGESQRKRFVIPIAYLNQPF 60
          MGFR   IVNA  +L  S   S  T +  + + KGY AVYVGESQ+KRFVIP++YLN+P 
Sbjct: 1  MGFRLPGIVNAKRSLIRSRSTSKRTAESKTDIPKGYFAVYVGESQKKRFVIPVSYLNEPL 60

Query: 61 FKDLLSRAEEEFGYNHPMGGLTIPCSEDTFIDLISHL 95
          F DLLS+AEEEFGY+HPMGG+TIPCSE+TF+DL S L
Sbjct: 61 FLDLLSQAEEEFGYDHPMGGITIPCSENTFLDLTSRL 97

[Close]

BLAST of Cla016620 vs. NCBI nr
Match: gi|700206748|gb|KGN61867.1| (hypothetical protein Csa_2G258630 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 6.2e-42
Identity = 85/95 (89.47%), Postives = 90/95 (94.74%), Query Frame = 1


Query: 1  MGFRFAKIVNAVHNLGLSSLATNQESSIVRKGYCAVYVGESQRKRFVIPIAYLNQPFFKD 60
          MGFR AKIVNAVHN+GLSSLATNQE SIVRKGYCAVYVGESQRKRFVIPI+YLN+PFFKD
Sbjct: 1  MGFRVAKIVNAVHNIGLSSLATNQEPSIVRKGYCAVYVGESQRKRFVIPISYLNRPFFKD 60

Query: 61 LLSRAEEEFGYNHPMGGLTIPCSEDTFIDLISHLH 96
          LL +AEEEFGYNHP GGLTIPCS+DTFI LISHLH
Sbjct: 61 LLCQAEEEFGYNHPTGGLTIPCSDDTFIGLISHLH 95

[Close]

BLAST of Cla016620 vs. NCBI nr
Match: gi|659116172|ref|XP_008457943.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis melo])

HSP 1 Score: 155.6 bits (392), Expect = 4.3e-35
Identity = 73/95 (76.84%), Postives = 83/95 (87.37%), Query Frame = 1


Query: 1  MGFRFAKIVNAVHNLGLSSLATNQESSIVRKGYCAVYVGESQRKRFVIPIAYLNQPFFKD 60
          MGFR  ++VNAV N+ LSSL T+  SS +RKGYCAVYVGESQ+KRFVIPIAYLN PFFKD
Sbjct: 1  MGFRLGRMVNAVQNIRLSSLTTHHGSSAIRKGYCAVYVGESQKKRFVIPIAYLNDPFFKD 60

Query: 61 LLSRAEEEFGYNHPMGGLTIPCSEDTFIDLISHLH 96
          LLS+  EEFGYNHPMGGLTIPCS+DTF+DLIS L+
Sbjct: 61 LLSQVGEEFGYNHPMGGLTIPCSDDTFMDLISRLN 95

[Close]

BLAST of Cla016620 vs. NCBI nr
Match: gi|700206746|gb|KGN61865.1| (SAUR family protein [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 6.2e-34
Identity = 70/95 (73.68%), Postives = 82/95 (86.32%), Query Frame = 1


Query: 1  MGFRFAKIVNAVHNLGLSSLATNQESSIVRKGYCAVYVGESQRKRFVIPIAYLNQPFFKD 60
          MGFR  ++VN + N+ LSSL T+  SS +RKGYCAVYVGE+Q+KRFVIPIAYLN+PFFKD
Sbjct: 1  MGFRLGRMVNVMQNIRLSSLTTHHGSSAIRKGYCAVYVGENQKKRFVIPIAYLNEPFFKD 60

Query: 61 LLSRAEEEFGYNHPMGGLTIPCSEDTFIDLISHLH 96
          LLS+  EEFGYNHPMGGLTIPCS DTF+DLIS L+
Sbjct: 61 LLSQVGEEFGYNHPMGGLTIPCSNDTFMDLISRLN 95

[Close]

BLAST of Cla016620 vs. NCBI nr
Match: gi|659116174|ref|XP_008457944.1| (PREDICTED: auxin-induced protein 6B-like [Cucumis melo])

HSP 1 Score: 151.0 bits (380), Expect = 1.1e-33
Identity = 72/81 (88.89%), Postives = 76/81 (93.83%), Query Frame = 1


Query: 15  LGLSSLATNQESSIVRKGYCAVYVGESQRKRFVIPIAYLNQPFFKDLLSRAEEEFGYNHP 74
           L LSSLAT+QE SIVRKGYCAVYVGESQRKRFVIPI+YLNQPFFKDLL +AEEEFGYNHP
Sbjct: 63  LSLSSLATSQEPSIVRKGYCAVYVGESQRKRFVIPISYLNQPFFKDLLCKAEEEFGYNHP 122

Query: 75  MGGLTIPCSEDTFIDLISHLH 96
           MGGLTIPCS+DTF  LISHLH
Sbjct: 123 MGGLTIPCSDDTFTCLISHLH 143

[Close]

BLAST of Cla016620 vs. NCBI nr
Match: gi|645263019|ref|XP_008237035.1| (PREDICTED: auxin-induced protein 15A-like [Prunus mume])

HSP 1 Score: 125.9 bits (315), Expect = 3.7e-26
Identity = 62/98 (63.27%), Postives = 76/98 (77.55%), Query Frame = 1


Query: 1  MGFRFAKIVNA----VHNLGLSSLATNQESSIVRKGYCAVYVGESQRKRFVIPIAYLNQP 60
          MGFR   IV A    + +L  SS   + ++S + KGY AVYVGESQ+KRFVIPI+YLN+P
Sbjct: 1  MGFRLPAIVKAKRSLIRSLSSSSQTADSKTSDIPKGYFAVYVGESQKKRFVIPISYLNEP 60

Query: 61 FFKDLLSRAEEEFGYNHPMGGLTIPCSEDTFIDLISHL 95
           F DLLS+ EEEFGY+HPMGG+TIPCSE+TF+DLIS L
Sbjct: 61 LFLDLLSQVEEEFGYDHPMGGITIPCSENTFLDLISRL 98

The following BLAST results are available for this feature:

BLAST of Cla016620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SAU23_ARATH	3.2e-22	69.23	Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana GN=SAUR23 PE=2 SV=1	[more]
SAU21_ARATH	4.2e-22	57.50	Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana GN=SAUR21 PE=2 SV=1	[more]
AX10A_SOYBN	1.2e-21	56.12	Auxin-induced protein X10A OS=Glycine max PE=2 SV=1	[more]
SAU24_ARATH	1.6e-21	66.18	Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana GN=SAUR24 PE=2 SV=1	[more]
A10A5_SOYBN	2.1e-21	55.10	Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1	[more]

BLAST of Cla016620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LM55_CUCSA	4.3e-42	89.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258630 PE=4 SV=1	[more]
A0A0A0LIY4_CUCSA	4.3e-34	73.68	SAUR family protein OS=Cucumis sativus GN=Csa_2G258610 PE=4 SV=1	[more]
M5W086_PRUPE	2.5e-26	63.27	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013844mg PE=4 SV=1	[more]
M5W753_PRUPE	9.7e-26	63.27	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013847mg PE=4 SV=1	[more]
M5VP01_PRUPE	1.6e-25	63.92	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013863mg PE=4 SV=1	[more]

BLAST of Cla016620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206748\|gb\|KGN61867.1\|	6.2e-42	89.47	hypothetical protein Csa_2G258630 [Cucumis sativus]	[more]
gi\|659116172\|ref\|XP_008457943.1\|	4.3e-35	76.84	PREDICTED: auxin-induced protein 15A-like [Cucumis melo]	[more]
gi\|700206746\|gb\|KGN61865.1\|	6.2e-34	73.68	SAUR family protein [Cucumis sativus]	[more]
gi\|659116174\|ref\|XP_008457944.1\|	1.1e-33	88.89	PREDICTED: auxin-induced protein 6B-like [Cucumis melo]	[more]
gi\|645263019\|ref\|XP_008237035.1\|	3.7e-26	63.27	PREDICTED: auxin-induced protein 15A-like [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003676	SAUR_fam

Vocabulary: **Biological Process**
Term	Definition
GO:0009733	response to auxin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla016620	Cla016620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 22..93 score: 5.0
None	No IPR available	PANTHER	PTHR31929	FAMILY NOT NAMED	coord: 1..95 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla016620	MELO3C013390	Melon (DHL92) v3.5.1	mewmB252
Cla016620	CSPI07G00670	Wild cucumber (PI 183967)	cpiwmB628
Cla016620	CmaCh19G007110	Cucurbita maxima (Rimu)	cmawmB506

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla016620	Cucumber (Chinese Long) v3	cucwmB166
Cla016620	Watermelon (97103) v2	wmwmbB361
Cla016620	Wax gourd	wgowmB406
Cla016620	Watermelon (97103) v1	wmwmB160
Cla016620	Cucumber (Gy14) v1	cgywmB323
Cla016620	Cucurbita maxima (Rimu)	cmawmB544
Cla016620	Cucurbita maxima (Rimu)	cmawmB610
Cla016620	Cucurbita moschata (Rifu)	cmowmB534
Cla016620	Cucurbita moschata (Rifu)	cmowmB603
Cla016620	Wild cucumber (PI 183967)	cpiwmB157
Cla016620	Melon (DHL92) v3.5.1	mewmB136
Cla016620	Watermelon (Charleston Gray)	wcgwmB107
Cla016620	Cucumber (Chinese Long) v2	cuwmB155
Cla016620	Cucumber (Chinese Long) v2	cuwmB609
Cla016620	Cucurbita pepo (Zucchini)	cpewmB309
Cla016620	Cucurbita pepo (Zucchini)	cpewmB751
Cla016620	Bottle gourd (USVL1VR-Ls)	lsiwmB084
Cla016620	Cucumber (Gy14) v2	cgybwmB147
Cla016620	Melon (DHL92) v3.6.1	medwmB133
Cla016620	Silver-seed gourd	carwmB0427
Cla016620	Silver-seed gourd	carwmB0822