Cla016562 (gene) Watermelon (97103) v1

Overview
NameCla016562
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionTranscription factor (AHRD V1 *-*- D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding
LocationChr11 : 22613039 .. 22616050 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGCCGTCGGCTCGACTCAAACGGCAGCGACCCCATGGCGACTGCCGGAGCTTGTCTTCCGTCTCGACTCCGGCAAGTCGGGTCAACCATTTTGAGGATCTAGTTGCACCTGGAGGTTGGCCCGAGTTAGCTAAGTACGAGATCTCCTCTACGAAGTTTCGAACCAATCAGACGTGTTCACTACTAACAGAGGTCATTGTTCATACAATTAAATTATTACTAAACTCAAAAGTTTCAAAATTAACATTATATCTAAAATATTAAATTATTAATAGTAACAAAAGTTTAAATGTAAAGATTATTGTACATTTAGGCACATTTAGGCTCGCTTTATATATATTAAAAAATAATGTTTGTTTTCTCATTAATTATTTATACGTTTTTTTTCTTTTCTTATAAACTCATTTTTAAAAACTGCTTGTAGGCACATTTAGACTCGCTTTATATATATTAAAAAATAATGTTTGTTTTCTCATTAATTACTTATATGTTTTTTTTTCTTTTCTTATAAACTACTTGTTTTAATTTTCAAATTTTATCATGGTTTTTAAAATTTTTAAAGGAGGTGATACAACCAATATATATANNNNNNNNNNTATATATATAGTAGTAATTATAGCTAGTATTTATTTTAATTTTTTGAAATTTAGCTGTAGATTAAATGTTTTTGTAAAGGAAAAAAAAAGAAAGAATTATGAGAAAAAGCGTGAAAATAAAAACAAGCACAAATTTAAAAAGGTGAGTGAATGTGAAAGGAGGAAATGGAAAGTAATGAAATTAAGACGTTATATTTAATAACTTATTCATATTGTTGGATGCAGGCGAACTCCGTGGTGGAGGGAGAGATTGCAAAAAAGAGAAAAGGGAAGAAGAAGGAAATGAAATGGAAAGGGAGAGATGACAATAATAATGTTGAATGGGGGAATGGAAGAGAGAAGAAAATGAAAGGAAAGGTTGAAGAAGATGAAGATGATGAAGATGAATCAAAGATTACGGAGGAAAGAGAGAGATGGAAATGCAATTCAAAAGCTTCAAAAGAAGTTCAAAAATCGGATTATGTTCATGTGAGAGCACGTCGAGGCCAAGCCACTGATAGCCATAGTCTTGCTGAAAGAGTAACAACATAATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTTCTTCTACAACAATATATTTTTATCTCCCCTTTTCGTTTTATCCTCCACTTTCAAAATGTTTTACTTTTAGTCCTTAATTAGTTTCGAGTTTGGTTTCGATTTAGTTTCTAAATTTTAACATGTTATAATTTTATTCTTGAGATTTGAGTTTTGTTTCAATTTAGTCTCTACGTTTTGAGATTTACAATTTTAACCTTGTTTTTTCCATTAAAAATTCACTTCTCCACTTAGTGGTTAATGTCTATTAATTAATTTAGAAGAATAAAAAGAATTTATTTTAAAATTTCACTTTGTAATTATTTTAAATTAATTTATAGATATTGGTGCCAAAGACTAAATTGAGTATTTAATGAAAAATTGAAGTTAAAGGTGCAAATTTTAAAACCTAAGGATCAAGTTGAAACAAGACTCAAATCTCAATGGTAAAATTGTAACATTTTGAAACTTATAGACTTAAATTGAAATCAAACTCAAAACTTAAGGACTAAAAATGTAACATTTTGAAACCTAGGGACCAAAATAGACCCAAATCCTAAGGACCAAAAATGTAATTTTTTTTCCTCTTTTTTGGGTTAAATTAAAATTTTAATATTTGAACTTTCGATTTTCTTTTTTTTAAAAAAACACAAATGTACTAAAAATTGAAAATTTAGAATTTTATTTGACATAAAAAATTTAAATTTATATCTAATAGATCAATTAATTTTATAAAGTTTCAAACTTGTCAAAAAATCTATTAGACACAAAATTGAGAATTCACCAATATATTAGATACTTCGAAGGTTCATGAACAAAATATACACAAACACCAAAGTTTGGATCTAAACCTATCATTTATTACTTTTTTAATGGTTAAATTAAAAGTTTAGTTCTTCAACTTTCAAAATGGGTCTAATAGGTTTTTAAAACTTTTAATTTTATGTCAAATAGGGCCCCTAGACTTTAAAGAAAAATGTCTAATAAATTCTTAAATTTGTGTTTAATAGATATCTATTTTTTTTCAATTTTATATCTAATATATCTTTGACTTCTTCGACATGTTTATTAAAATGAACATATATACTAAACATAAAATTGAAATTTTAGGATTTAATTAGATATTAAATTCAATTTTGTATCTTAATCATTAGTTATCAATTAATCTTTTCTTTTGAAAAAATTGAATATATGAGAAACACCTTTTAGTTTAGAAATTATTAAATAAACAATTTATTATAAAAGTTAAGAGTAATTTAAAGAATTTATTTTTAGTATTGTTTTTGTTTGTTTATGGGGAAAATGGAATGATGTAAATATGTGAATATTGCAGGCAAGGAGAGAGAAGATAAGTGAGAGAATGAAGTATTTGCAGAATTTGGTCCCTGGGTGTAACAAAATTGCTGGAAAAGCTGGAATGCTTGATGAAATTATTAATTATGTTCAATCTCTCCAACAACAAGTTGAGGTCATAAATTCATCCAAATTAACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTTGAAATTTTTTAAAAATAAAATTTTCACAAATTTTTTTTTTTTTTTTTTTCTTCCTCCCCCTCTGTCTCGTGCAGTTCTTATCTATGAAGGTGGCTGCTCTCAATCACAGAGTTGATTTCATCAATGTAGATGACTTCTTGGCCAAACAGGTAAGATTAATAATCATCCAACTCGGACGTATTGCTAATAGAAGTCTATCATATATAAATTTTGTTATGTTTGCAATTTTTTATAAATGTTGCTTTATACTTAATTATTTGCCCTAA

mRNA sequence

ATGACGCCGTCGGCTCGACTCAAACGGCAGCGACCCCATGGCGACTGCCGGAGCTTGTCTTCCGTCTCGACTCCGGCAAGTCGGGTCAACCATTTTGAGGATCTAGTTGCACCTGGAGGTTGGCCCGAGTTAGCTAAGTACGAGATCTCCTCTACGAAGTTTCGAACCAATCAGACGTGTTCACTACTAACAGAGGCGAACTCCGTGGTGGAGGGAGAGATTGCAAAAAAGAGAAAAGGGAAGAAGAAGGAAATGAAATGGAAAGGGAGAGATGACAATAATAATGTTGAATGGGGGAATGGAAGAGAGAAGAAAATGAAAGGAAAGGTTGAAGAAGATGAAGATGATGAAGATGAATCAAAGATTACGGAGGAAAGAGAGAGATGGAAATGCAATTCAAAAGCTTCAAAAGAAGTTCAAAAATCGGATTATGTTCATGTGAGAGCACGTCGAGGCCAAGCCACTGATAGCCATAGTCTTGCTGAAAGAGCAAGGAGAGAGAAGATAAGTGAGAGAATGAAGTATTTGCAGAATTTGGTCCCTGGGTGTAACAAAATTGCTGGAAAAGCTGGAATGCTTGATGAAATTATTAATTATGTTCAATCTCTCCAACAACAAGTTGAGTTCTTATCTATGAAGGTGGCTGCTCTCAATCACAGAGTTGATTTCATCAATGTAGATGACTTCTTGGCCAAACAGGTAAGATTAATAATCATCCAACTCGGACGTATTGCTAATAGAAGTCTATCATATATAAATTTTGTTATGTTTGCAATTTTTTATAAATGTTGCTTTATACTTAATTATTTGCCCTAA

Coding sequence (CDS)

ATGACGCCGTCGGCTCGACTCAAACGGCAGCGACCCCATGGCGACTGCCGGAGCTTGTCTTCCGTCTCGACTCCGGCAAGTCGGGTCAACCATTTTGAGGATCTAGTTGCACCTGGAGGTTGGCCCGAGTTAGCTAAGTACGAGATCTCCTCTACGAAGTTTCGAACCAATCAGACGTGTTCACTACTAACAGAGGCGAACTCCGTGGTGGAGGGAGAGATTGCAAAAAAGAGAAAAGGGAAGAAGAAGGAAATGAAATGGAAAGGGAGAGATGACAATAATAATGTTGAATGGGGGAATGGAAGAGAGAAGAAAATGAAAGGAAAGGTTGAAGAAGATGAAGATGATGAAGATGAATCAAAGATTACGGAGGAAAGAGAGAGATGGAAATGCAATTCAAAAGCTTCAAAAGAAGTTCAAAAATCGGATTATGTTCATGTGAGAGCACGTCGAGGCCAAGCCACTGATAGCCATAGTCTTGCTGAAAGAGCAAGGAGAGAGAAGATAAGTGAGAGAATGAAGTATTTGCAGAATTTGGTCCCTGGGTGTAACAAAATTGCTGGAAAAGCTGGAATGCTTGATGAAATTATTAATTATGTTCAATCTCTCCAACAACAAGTTGAGTTCTTATCTATGAAGGTGGCTGCTCTCAATCACAGAGTTGATTTCATCAATGTAGATGACTTCTTGGCCAAACAGGTAAGATTAATAATCATCCAACTCGGACGTATTGCTAATAGAAGTCTATCATATATAAATTTTGTTATGTTTGCAATTTTTTATAAATGTTGCTTTATACTTAATTATTTGCCCTAA

Protein sequence

MTPSARLKRQRPHGDCRSLSSVSTPASRVNHFEDLVAPGGWPELAKYEISSTKFRTNQTCSLLTEANSVVEGEIAKKRKGKKKEMKWKGRDDNNNVEWGNGREKKMKGKVEEDEDDEDESKITEERERWKCNSKASKEVQKSDYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDDFLAKQVRLIIIQLGRIANRSLSYINFVMFAIFYKCCFILNYLP
Homology
[Close]
BLAST of Cla016562 vs. Swiss-Prot
Match: BH063_ARATH (Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=1 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 9.7e-40
Identity = 92/168 (54.76%), Postives = 115/168 (68.45%), Query Frame = 1 

Query: 73  EIAKKRKGKKKEMKWKGRDDNNNV-EWGNGREK-----KMKGKVEEDEDDEDESKITEER 132
           E  KK    + ++  +G ++ + + E  NG  K     K K K EE+    D SK+T   
Sbjct: 105 EKKKKMTMNRDDLVEEGEEEKSKITEQNNGSTKSIKKMKHKAKKEENNFSNDSSKVT--- 164

Query: 133 ERWKCNSKASKEVQKSDYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVPGCNKI 192
                     KE++K+DY+HVRARRGQATDSHS+AER RREKISERMK+LQ+LVPGC+KI
Sbjct: 165 ----------KELEKTDYIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKI 224

Query: 193 AGKAGMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDDFLAKQV 235
            GKAGMLDEIINYVQSLQ+Q+EFLSMK+A +N R DF ++DD  AK+V
Sbjct: 225 TGKAGMLDEIINYVQSLQRQIEFLSMKLAIVNPRPDF-DMDDIFAKEV 258

[Close]
BLAST of Cla016562 vs. Swiss-Prot
Match: BEE2_ARATH (Transcription factor BEE 2 OS=Arabidopsis thaliana GN=BEE2 PE=2 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 5.9e-37
Identity = 80/135 (59.26%), Postives = 104/135 (77.04%), Query Frame = 1 

Query: 103 EKKMKGKVEEDEDD----EDESKITEERERWKCNSKASKEVQKSDYVHVRARRGQATDSH 162
           ++K +GK E+ E      EDE++ + + +    N++ S E+QK DY+HVRARRG+ATD H
Sbjct: 93  KRKPEGKTEKREKKKIKAEDETEPSMKGKSNMSNTETSSEIQKPDYIHVRARRGEATDRH 152

Query: 163 SLAERARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKVAALN 222
           SLAERARREKIS++MK LQ++VPGCNK+ GKAGMLDEIINYVQSLQQQVEFLSMK++ +N
Sbjct: 153 SLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQQVEFLSMKLSVIN 212

Query: 223 HRVDFINVDDFLAKQ 234
             ++  ++DD  AKQ
Sbjct: 213 PELE-CHIDDLSAKQ 226

[Close]
BLAST of Cla016562 vs. Swiss-Prot
Match: BH062_ARATH (Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 3.8e-36
Identity = 86/164 (52.44%), Postives = 107/164 (65.24%), Query Frame = 1 

Query: 72  GEIAKKRKGKKKEMKWKGRDDNNNVEWGNGREKKMKGKVEEDEDDEDESKITEERERWKC 131
           GE+++KRK K K+               N        K  E+++D D  +  +  E    
Sbjct: 201 GELSRKRKTKSKQ---------------NSPSAVSSSKEIEEKEDSDPKRCKKSEE---- 260

Query: 132 NSKASKEVQK-SDYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKA 191
           N   +K +    DY+HVRARRGQATDSHSLAER RREKISERMK LQ+LVPGCNK+ GKA
Sbjct: 261 NGDKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKA 320

Query: 192 GMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDDFLAKQV 235
            MLDEIINYVQSLQ+QVEFLSMK++++N R+DF N+D  L+K +
Sbjct: 321 LMLDEIINYVQSLQRQVEFLSMKLSSVNTRLDF-NMDALLSKDI 344

[Close]
BLAST of Cla016562 vs. Swiss-Prot
Match: BH078_ARATH (Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 6.5e-36
Identity = 93/179 (51.96%), Postives = 117/179 (65.36%), Query Frame = 1 

Query: 72  GEIAKKRK----GKKKEM---------KWKGRDDNNNVEWGNGREKKMKGKVEEDEDDED 131
           GE ++KRK    GK KE           +    + N  + G+   ++  GK   +E+D++
Sbjct: 216 GEFSRKRKSVPKGKSKENPISTASPSPSFSKTAEKNGGKGGSKSSEEKGGKRRREEEDDE 275

Query: 132 ESKITEERERWKCNSKASKEVQKSDYVHVRARRGQATDSHSLAERARREKISERMKYLQN 191
           E +   E E  K N+    E  K DY+HVRARRGQATDSHSLAER RREKI ERMK LQ+
Sbjct: 276 EEE--GEGEGNKSNNTKPPEPPK-DYIHVRARRGQATDSHSLAERVRREKIGERMKLLQD 335

Query: 192 LVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKVAALNH-RVDFINVDDFLAKQVRL 237
           LVPGCNK+ GKA MLDEIINYVQSLQ+QVEFLSMK++++N  R+DF NVD  ++K V +
Sbjct: 336 LVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNDTRLDF-NVDALVSKDVMI 390

[Close]
BLAST of Cla016562 vs. Swiss-Prot
Match: HBI1_ARATH (Transcription factor HBI1 OS=Arabidopsis thaliana GN=HBI1 PE=1 SV=3)

HSP 1 Score: 151.4 bits (381), Expect = 1.4e-35
Identity = 86/160 (53.75%), Postives = 103/160 (64.38%), Query Frame = 1 

Query: 74  IAKKRKGKKKEMKWKGRDDNNNVEWGNGREKKMKGKVEEDEDDEDESKITEERERWKCNS 133
           +  KRK + K  + +  +    VE       K K  +   E   D SK T         S
Sbjct: 121 LKNKRKPEVKTREEQKTEKKIKVEAETESSMKGKSNMGNTEASSDTSKET---------S 180

Query: 134 KASKEVQKSDYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAGML 193
           K + E QK DY+HVRARRGQATD HSLAERARREKIS++MKYLQ++VPGCNK+ GKAGML
Sbjct: 181 KGASENQKLDYIHVRARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGML 240

Query: 194 DEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDDFLAKQ 234
           DEIINYVQ LQ+QVEFLSMK+A LN  ++ + V+D   KQ
Sbjct: 241 DEIINYVQCLQRQVEFLSMKLAVLNPELE-LAVEDVSVKQ 270

[Close]
BLAST of Cla016562 vs. TrEMBL
Match: A0A0A0LIZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G247590 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.5e-47
Identity = 117/182 (64.29%), Postives = 135/182 (74.18%), Query Frame = 1 

Query: 1   MTPSARLKRQRPHGDCRSLSSVSTPASRVNHFEDLVAPGGWPELAKYEISSTKFRTNQTC 60
           MT SAR KRQ+ H D  SLSSVSTPASRV+HFEDLVAPGGWPELAKYEISS + RTN   
Sbjct: 6   MTASARFKRQKTHPDSLSLSSVSTPASRVDHFEDLVAPGGWPELAKYEISSKELRTNPMG 65

Query: 61  SLLTEANS--VVEGEIAKK-RKGKKKEMKWK-GRDDNNNVEWG-NGR-----EKKMKGKV 120
           S   +A +   VEGEI KK RKGK KE K K  +++NNNVEW  NG      EKKMK KV
Sbjct: 66  SSRVKAINWRTVEGEIPKKMRKGKNKETKSKIDKENNNNVEWDENGSKDDRLEKKMKEKV 125

Query: 121 EEDEDDEDESKITEERERWK--CNSKASKEVQKSDYVHVRARRGQATDSHSLAERARREK 171
           EE   +++ESK+TEE ERWK   NSK S+E++K DYVHVRARRG+ATDSHSLAER    K
Sbjct: 126 EE---EDEESKVTEETERWKKHNNSKGSEEIKKMDYVHVRARRGKATDSHSLAERFLSMK 184

[Close]
BLAST of Cla016562 vs. TrEMBL
Match: A0A0A0LIZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G247590 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 7.7e-36
Identity = 111/238 (46.64%), Postives = 132/238 (55.46%), Query Frame = 1 

Query: 1   MTPSARLKRQRPHGDCRSLSSVSTPASRVNHFEDLVAPGGWPELAKYEISSTKFRTNQTC 60
           MT SAR KRQ+ H D  SLSSVSTPASRV+HFEDLVAPGGWPELAKYEISS + RTN   
Sbjct: 6   MTASARFKRQKTHPDSLSLSSVSTPASRVDHFEDLVAPGGWPELAKYEISSKELRTNPMG 65

Query: 61  SLLTEANS--VVEGEIAKK-RKGKKKEMKWK-GRDDNNNVEWGNGREKKMKGKVEEDEDD 120
           S   +A +   VEGEI KK RKGK KE K K  +++NNNVEW     K          DD
Sbjct: 66  SSRVKAINWRTVEGEIPKKMRKGKNKETKSKIDKENNNNVEWDENGSK----------DD 125

Query: 121 EDESKITEERERWKCNSKASKEVQKSDYVHVRARRGQATDSHSLAERARREKISERMKYL 180
             E K+ E+ E     SK ++E ++                    ++    K SE +K +
Sbjct: 126 RLEKKMKEKVEEEDEESKVTEETERW-------------------KKHNNSKGSEEIKKM 185

Query: 181 QNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDDFLAKQV 235
             +     +  GKA           S      FLSMKVAALNHRVDFINVDD LAKQ+
Sbjct: 186 DYVHVRARR--GKA---------TDSHSLAERFLSMKVAALNHRVDFINVDDLLAKQM 203


HSP 2 Score: 185.3 bits (469), Expect = 1.0e-43
Identity = 111/201 (55.22%), Postives = 135/201 (67.16%), Query Frame = 1 

Query: 65  EANSVVEGEIAKKRKGKKKEMKWKGRDDNNNVEWGNGREKKMKGKVEEDEDDEDESKITE 124
           + +S    E  KKRK  K        ++   V+  + REK+ KG  EE +     SKITE
Sbjct: 166 KTSSAAGRESFKKRKADKV-------NNTKGVQEDDSREKRAKGSAEEGD-----SKITE 225

Query: 125 ER----------------ERWKCNSKASKEVQKSDYVHVRARRGQATDSHSLAERARREK 184
           +                 +  K NSKAS EVQK DY+HVRARRGQATDSHSLAER RREK
Sbjct: 226 QNSPKNNNTNANNRESSADTSKENSKAS-EVQKPDYIHVRARRGQATDSHSLAERVRREK 285

Query: 185 ISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDD 244
           ISERMKYLQ+LVPGCNKI GKAGMLDEIINYVQSLQ+QVEFLSMK+AA+N R+DF N+DD
Sbjct: 286 ISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDF-NIDD 345

Query: 245 FLAKQVRLIIIQLGRIANRSL 250
             AK++ +I+I L +I  + +
Sbjct: 346 LFAKELLIIVIFLKQITIKQM 352

[Close]
BLAST of Cla016562 vs. TrEMBL
Match: A0A0A0K0C8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G000520 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.9e-42
Identity = 116/232 (50.00%), Postives = 142/232 (61.21%), Query Frame = 1 

Query: 40  GWPELAKY-----------EISSTKFRTNQTCSLLTEANSVVEGEIA-----KKRKGKKK 99
           GW E+ K+           E++S+  RT+    ++    +   G +A     KKRK +K 
Sbjct: 106 GWSEMGKFDPSLLLNPTACELNSSLSRTSSCLPVVAPTVAEKMGSMAGRESFKKRKAEKA 165

Query: 100 EMKWKGRDDNNNV------EWGNGREKKMK-------GKVEEDEDDEDESKITE------ 159
                  + NNN       E  N +EK++K        K  +    ++ S IT       
Sbjct: 166 HNTTTTANTNNNKVTVEEDENNNSKEKRIKTSSEGELSKTTDQNGTKNNSTITTTTNNNR 225

Query: 160 --ERERWKCNSKASKEVQKSDYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVPG 219
               +  K NSKAS EVQK DY+HVRARRGQATDSHSLAERARREKISERMKYLQ+LVPG
Sbjct: 226 ETSADTSKENSKAS-EVQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPG 285

Query: 220 CNKIAGKAGMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDDFLAKQV 235
           CNKI GKAGMLDEIINYVQSLQ+QVEFLSMK+AA+N R+DF NVDD   K+V
Sbjct: 286 CNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDF-NVDDLFNKEV 335

[Close]
BLAST of Cla016562 vs. TrEMBL
Match: I1LQ32_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G042800 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 7.2e-42
Identity = 110/218 (50.46%), Postives = 137/218 (62.84%), Query Frame = 1 

Query: 38  PGGWPELAKYEISSTKFRTNQTCSLLTEANSVVEGEIAKKRKGKKKEMKWKGRDDNNNVE 97
           PG WPE       S      +TCS   +  S  E   + K   KK+    K ++     E
Sbjct: 80  PGVWPEFGFLPAIS------RTCSRDGDLVSPKENMASGKENAKKR----KPQNSKVVAE 139

Query: 98  WGNGREKKMKGKVEEDEDDEDESKITEERERWK-CNSKASK---------------EVQK 157
             N ++K  + KV     +E ESK+TE   R K   S A+K               + QK
Sbjct: 140 IDNNKDKDKRVKVT---GEEGESKVTEHHTRNKNAKSNANKNNRETSADTSKGSEVQNQK 199

Query: 158 SDYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQ 217
            DY+HVRARRGQATDSHSLAER RREKISERMKYLQ+L+PGCNK+AGKAGMLDEIINYVQ
Sbjct: 200 PDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLIPGCNKVAGKAGMLDEIINYVQ 259

Query: 218 SLQQQVEFLSMKVAALNHRVDFINVDDFLAKQVRLIII 240
           SLQ+QVEFLSMK+AA+N R+DF N+D+  AK+VR +++
Sbjct: 260 SLQRQVEFLSMKLAAVNPRLDF-NIDELFAKEVRSLLM 283

[Close]
BLAST of Cla016562 vs. TrEMBL
Match: W1NHQ1_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00011p00241810 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.1e-41
Identity = 100/167 (59.88%), Postives = 123/167 (73.65%), Query Frame = 1 

Query: 76  KKRKGKKKEMKWKGRDDNNNVEWGNGREKKMKGKVEEDEDDE------DESKITEER--E 135
           KKRK +K +           +     ++K++KG+ + D D+E      +++  T E   E
Sbjct: 163 KKRKAEKAQGHASEASSPKGMVTEEMKDKRIKGERDGDGDEEVSKQRRNDNNNTSEMSVE 222

Query: 136 RWKCNSKASKEVQKSDYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVPGCNKIA 195
             K +SKAS EVQK DY+HVRARRGQATDSHSLAER RREKISERMKYLQ+LVPGCNKI 
Sbjct: 223 TTKDSSKAS-EVQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIT 282

Query: 196 GKAGMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDDFLAKQV 235
           GKAGMLDEIINYVQSLQQQVEFLSMK+AA+N R+DF N+D+F  K++
Sbjct: 283 GKAGMLDEIINYVQSLQQQVEFLSMKLAAVNPRLDF-NIDNFFTKEI 327

[Close]
BLAST of Cla016562 vs. NCBI nr
Match: gi|778669339|ref|XP_004148863.2| (PREDICTED: transcription factor bHLH78 [Cucumis sativus])

HSP 1 Score: 330.5 bits (846), Expect = 2.8e-87
Identity = 185/246 (75.20%), Postives = 202/246 (82.11%), Query Frame = 1 

Query: 1   MTPSARLKRQRPHGDCRSLSSVSTPASRVNHFEDLVAPGGWPELAKYEISSTKFRTNQTC 60
           MT SAR KRQ+ H D  SLSSVSTPASRV+HFEDLVAPGGWPELAKYEISS + RTN   
Sbjct: 6   MTASARFKRQKTHPDSLSLSSVSTPASRVDHFEDLVAPGGWPELAKYEISSKELRTNPMG 65

Query: 61  SLLTEANS--VVEGEIAKK-RKGKKKEMKWK-GRDDNNNVEWG-NGR-----EKKMKGKV 120
           S   +A +   VEGEI KK RKGK KE K K  +++NNNVEW  NG      EKKMK KV
Sbjct: 66  SSRVKAINWRTVEGEIPKKMRKGKNKETKSKIDKENNNNVEWDENGSKDDRLEKKMKEKV 125

Query: 121 EEDEDDEDESKITEERERWKC--NSKASKEVQKSDYVHVRARRGQATDSHSLAERARREK 180
           EE+++   ESK+TEE ERWK   NSK S+E++K DYVHVRARRG+ATDSHSLAERARREK
Sbjct: 126 EEEDE---ESKVTEETERWKKHNNSKGSEEIKKMDYVHVRARRGKATDSHSLAERARREK 185

Query: 181 ISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDD 235
           ISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDD
Sbjct: 186 ISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDD 245

[Close]
BLAST of Cla016562 vs. NCBI nr
Match: gi|700206679|gb|KGN61798.1| (hypothetical protein Csa_2G247590 [Cucumis sativus])

HSP 1 Score: 198.0 bits (502), Expect = 2.2e-47
Identity = 117/182 (64.29%), Postives = 135/182 (74.18%), Query Frame = 1 

Query: 1   MTPSARLKRQRPHGDCRSLSSVSTPASRVNHFEDLVAPGGWPELAKYEISSTKFRTNQTC 60
           MT SAR KRQ+ H D  SLSSVSTPASRV+HFEDLVAPGGWPELAKYEISS + RTN   
Sbjct: 6   MTASARFKRQKTHPDSLSLSSVSTPASRVDHFEDLVAPGGWPELAKYEISSKELRTNPMG 65

Query: 61  SLLTEANS--VVEGEIAKK-RKGKKKEMKWK-GRDDNNNVEWG-NGR-----EKKMKGKV 120
           S   +A +   VEGEI KK RKGK KE K K  +++NNNVEW  NG      EKKMK KV
Sbjct: 66  SSRVKAINWRTVEGEIPKKMRKGKNKETKSKIDKENNNNVEWDENGSKDDRLEKKMKEKV 125

Query: 121 EEDEDDEDESKITEERERWK--CNSKASKEVQKSDYVHVRARRGQATDSHSLAERARREK 171
           EE   +++ESK+TEE ERWK   NSK S+E++K DYVHVRARRG+ATDSHSLAER    K
Sbjct: 126 EE---EDEESKVTEETERWKKHNNSKGSEEIKKMDYVHVRARRGKATDSHSLAERFLSMK 184

[Close]
BLAST of Cla016562 vs. NCBI nr
Match: gi|700206679|gb|KGN61798.1| (hypothetical protein Csa_2G247590 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 1.1e-35
Identity = 111/238 (46.64%), Postives = 132/238 (55.46%), Query Frame = 1 

Query: 1   MTPSARLKRQRPHGDCRSLSSVSTPASRVNHFEDLVAPGGWPELAKYEISSTKFRTNQTC 60
           MT SAR KRQ+ H D  SLSSVSTPASRV+HFEDLVAPGGWPELAKYEISS + RTN   
Sbjct: 6   MTASARFKRQKTHPDSLSLSSVSTPASRVDHFEDLVAPGGWPELAKYEISSKELRTNPMG 65

Query: 61  SLLTEANS--VVEGEIAKK-RKGKKKEMKWK-GRDDNNNVEWGNGREKKMKGKVEEDEDD 120
           S   +A +   VEGEI KK RKGK KE K K  +++NNNVEW     K          DD
Sbjct: 66  SSRVKAINWRTVEGEIPKKMRKGKNKETKSKIDKENNNNVEWDENGSK----------DD 125

Query: 121 EDESKITEERERWKCNSKASKEVQKSDYVHVRARRGQATDSHSLAERARREKISERMKYL 180
             E K+ E+ E     SK ++E ++                    ++    K SE +K +
Sbjct: 126 RLEKKMKEKVEEEDEESKVTEETERW-------------------KKHNNSKGSEEIKKM 185

Query: 181 QNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDDFLAKQV 235
             +     +  GKA           S      FLSMKVAALNHRVDFINVDD LAKQ+
Sbjct: 186 DYVHVRARR--GKA---------TDSHSLAERFLSMKVAALNHRVDFINVDDLLAKQM 203


HSP 2 Score: 185.3 bits (469), Expect = 1.4e-43
Identity = 111/201 (55.22%), Postives = 135/201 (67.16%), Query Frame = 1 

Query: 65  EANSVVEGEIAKKRKGKKKEMKWKGRDDNNNVEWGNGREKKMKGKVEEDEDDEDESKITE 124
           + +S    E  KKRK  K        ++   V+  + REK+ KG  EE +     SKITE
Sbjct: 166 KTSSAAGRESFKKRKADKV-------NNTKGVQEDDSREKRAKGSAEEGD-----SKITE 225

Query: 125 ER----------------ERWKCNSKASKEVQKSDYVHVRARRGQATDSHSLAERARREK 184
           +                 +  K NSKAS EVQK DY+HVRARRGQATDSHSLAER RREK
Sbjct: 226 QNSPKNNNTNANNRESSADTSKENSKAS-EVQKPDYIHVRARRGQATDSHSLAERVRREK 285

Query: 185 ISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDD 244
           ISERMKYLQ+LVPGCNKI GKAGMLDEIINYVQSLQ+QVEFLSMK+AA+N R+DF N+DD
Sbjct: 286 ISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDF-NIDD 345

Query: 245 FLAKQVRLIIIQLGRIANRSL 250
             AK++ +I+I L +I  + +
Sbjct: 346 LFAKELLIIVIFLKQITIKQM 352

[Close]
BLAST of Cla016562 vs. NCBI nr
Match: gi|659094487|ref|XP_008448085.1| (PREDICTED: uncharacterized protein LOC103490373 [Cucumis melo])

HSP 1 Score: 183.0 bits (463), Expect = 7.2e-43
Identity = 115/230 (50.00%), Postives = 142/230 (61.74%), Query Frame = 1 

Query: 40  GWPELAKY-----------EISSTKFRTNQTCSLLTEANSVVEGEIA-----KKRKGKKK 99
           GW E+ K+           E++S+  RT+    ++    +   G +A     KKRK +K 
Sbjct: 278 GWSEMGKFDPSLLLNATACELNSSLSRTSSCLPVVAPTAAEKMGSVAGRESFKKRKAEKA 337

Query: 100 EMKWKGRDDNNNV----EWGNGREKKMK-------GKVEEDEDDEDESKITE-------- 159
                  + NN V    +  N +EK++K        K  +    ++ S IT         
Sbjct: 338 HNTTTTNNSNNKVTVEEDENNSKEKRIKTSSEGELSKTTDQNGTKNNSTITTTTNNNRET 397

Query: 160 ERERWKCNSKASKEVQKSDYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVPGCN 219
             +  K NSKAS EVQK DY+HVRARRGQATDSHSLAERARREKISERMKYLQ+LVPGCN
Sbjct: 398 SADTSKENSKAS-EVQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCN 457

Query: 220 KIAGKAGMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDDFLAKQV 235
           KI GKAGMLDEIINYVQSLQ+QVEFLSMK+AA+N R+DF NVDD   K+V
Sbjct: 458 KITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDF-NVDDLFNKEV 505

[Close]
BLAST of Cla016562 vs. NCBI nr
Match: gi|470106634|ref|XP_004289668.1| (PREDICTED: transcription factor bHLH63 [Fragaria vesca subsp. vesca])

HSP 1 Score: 181.8 bits (460), Expect = 1.6e-42
Identity = 117/246 (47.56%), Postives = 146/246 (59.35%), Query Frame = 1 

Query: 20  SSVSTPASRVNHFEDLVAPGG-----------------WPELAK----YEISSTK--FRT 79
           S +   AS+V  F+ L+  GG                 W EL      +E+++    F  
Sbjct: 61  SHMPIQASQVQSFQGLIGLGGDLGMGQAVKPDPSSENGWTELGYGSCGFEMNNIARTFSC 120

Query: 80  NQTCSLLTEANSVVEGEIAKKRKGKKKEMKWKGRDDNNNVEWG--NGREKKMKGKVEEDE 139
               +  T++N+ V         GK+   K K     NN   G  +  +K+MKG  EE +
Sbjct: 121 PPKVAAETKSNNAVASPKISSPAGKESFKKRKADKAQNNKAVGEDDSSDKRMKGCAEEGD 180

Query: 140 DDEDESKITEERERW------KCNSKASKEVQKSDYVHVRARRGQATDSHSLAERARREK 199
               E    +  +R       K NSKAS EVQK DY+HVRARRGQATDSHSLAER RREK
Sbjct: 181 SKITEQNSPKNNDRESSADTSKGNSKAS-EVQKPDYIHVRARRGQATDSHSLAERVRREK 240

Query: 200 ISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDD 235
           ISERMKYLQ+LVPGCNKI GKAGMLDEIINYVQSLQ+QVEFLSMK+AA+N R+DF N+DD
Sbjct: 241 ISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDF-NIDD 300

The following BLAST results are available for this feature:
BLAST of Cla016562 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BH063_ARATH9.7e-4054.76Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=1 SV=1[more]
BEE2_ARATH5.9e-3759.26Transcription factor BEE 2 OS=Arabidopsis thaliana GN=BEE2 PE=2 SV=1[more]
BH062_ARATH3.8e-3652.44Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1[more]
BH078_ARATH6.5e-3651.96Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=1 SV=1[more]
HBI1_ARATH1.4e-3553.75Transcription factor HBI1 OS=Arabidopsis thaliana GN=HBI1 PE=1 SV=3[more]
BLAST of Cla016562 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIZ7_CUCSA1.5e-4764.29Uncharacterized protein OS=Cucumis sativus GN=Csa_2G247590 PE=4 SV=1[more]
A0A0A0LIZ7_CUCSA7.7e-3646.64Uncharacterized protein OS=Cucumis sativus GN=Csa_2G247590 PE=4 SV=1[more]
A0A0A0K0C8_CUCSA1.9e-4250.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G000520 PE=4 SV=1[more]
I1LQ32_SOYBN7.2e-4250.46Uncharacterized protein OS=Glycine max GN=GLYMA_12G042800 PE=4 SV=1[more]
W1NHQ1_AMBTC2.1e-4159.88Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00011p00241810 PE=4 SV=... [more]
BLAST of Cla016562 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778669339|ref|XP_004148863.2|2.8e-8775.20PREDICTED: transcription factor bHLH78 [Cucumis sativus][more]
gi|700206679|gb|KGN61798.1|2.2e-4764.29hypothetical protein Csa_2G247590 [Cucumis sativus][more]
gi|700206679|gb|KGN61798.1|1.1e-3546.64hypothetical protein Csa_2G247590 [Cucumis sativus][more]
gi|659094487|ref|XP_008448085.1|7.2e-4350.00PREDICTED: uncharacterized protein LOC103490373 [Cucumis melo][more]
gi|470106634|ref|XP_004289668.1|1.6e-4247.56PREDICTED: transcription factor bHLH63 [Fragaria vesca subsp. vesca][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
biological_process GO:0042545 cell wall modification
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005575 cellular_component
cellular_component GO:0005618 cell wall
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0030599 pectinesterase activity
molecular_function GO:0043565 sequence-specific DNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU46793watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla016562Cla016562.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU46793WMU46793transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 153..223
score: 5.3
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 157..204
score: 1.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 159..209
score: 5.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROFILEPS50888BHLHcoord: 153..203
score: 15
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 151..223
score: 2.36
NoneNo IPR availableunknownCoilCoilcoord: 200..220
scor
NoneNo IPR availablePANTHERPTHR12565STEROL REGULATORY ELEMENT-BINDING PROTEINcoord: 65..234
score: 6.2
NoneNo IPR availablePANTHERPTHR12565:SF149SUBFAMILY NOT NAMEDcoord: 65..234
score: 6.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla016562Cla97C02G031850Watermelon (97103) v2wmwmbB367
Cla016562Cla97C11G211110Watermelon (97103) v2wmwmbB361
Cla016562Csa7G000520Cucumber (Chinese Long) v2cuwmB609
Cla016562Csa2G247590Cucumber (Chinese Long) v2cuwmB155
Cla016562MELO3C013453Melon (DHL92) v3.5.1mewmB252
Cla016562MELO3C023299Melon (DHL92) v3.5.1mewmB134
Cla016562ClCG11G004370Watermelon (Charleston Gray)wcgwmB107
Cla016562ClCG02G004870Watermelon (Charleston Gray)wcgwmB217
Cla016562CSPI07G00020Wild cucumber (PI 183967)cpiwmB628
Cla016562CSPI02G12240Wild cucumber (PI 183967)cpiwmB157
Cla016562Cucsa.377700Cucumber (Gy14) v1cgywmB680
Cla016562CmaCh20G008470Cucurbita maxima (Rimu)cmawmB544
Cla016562CmaCh02G003940Cucurbita maxima (Rimu)cmawmB610
Cla016562CmoCh02G004000Cucurbita moschata (Rifu)cmowmB603
Cla016562CmoCh20G008570Cucurbita moschata (Rifu)cmowmB534
Cla016562CmoCh19G006890Cucurbita moschata (Rifu)cmowmB498
Cla016562Lsi11G011120Bottle gourd (USVL1VR-Ls)lsiwmB111
Cla016562Cp4.1LG15g05430Cucurbita pepo (Zucchini)cpewmB270
Cla016562Cp4.1LG05g12530Cucurbita pepo (Zucchini)cpewmB751
Cla016562CsGy2G012230Cucumber (Gy14) v2cgybwmB147
Cla016562CsGy7G000110Cucumber (Gy14) v2cgybwmB571
Cla016562MELO3C023299.2Melon (DHL92) v3.6.1medwmB130
Cla016562MELO3C013453.2Melon (DHL92) v3.6.1medwmB244
Cla016562Carg19402Silver-seed gourdcarwmB0307
Cla016562Carg22942Silver-seed gourdcarwmB0896
Cla016562CsaV3_7G000080Cucumber (Chinese Long) v3cucwmB640
Cla016562CsaV3_2G014750Cucumber (Chinese Long) v3cucwmB166
Cla016562Bhi05G001112Wax gourdwgowmB287
Cla016562Bhi10G001613Wax gourdwgowmB406
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cla016562Cla015913Watermelon (97103) v1wmwmB160
The following block(s) are covering this gene:
GeneOrganismBlock
Cla016562Silver-seed gourdcarwmB0466
Cla016562Cucumber (Chinese Long) v3cucwmB282
Cla016562Wax gourdwgowmB140
Cla016562Watermelon (97103) v1wmwmB135
Cla016562Cucumber (Gy14) v1cgywmB156
Cla016562Cucumber (Gy14) v1cgywmB618
Cla016562Wild cucumber (PI 183967)cpiwmB274
Cla016562Watermelon (Charleston Gray)wcgwmB307
Cla016562Cucumber (Chinese Long) v2cuwmB273
Cla016562Cucurbita pepo (Zucchini)cpewmB309
Cla016562Bottle gourd (USVL1VR-Ls)lsiwmB084
Cla016562Melon (DHL92) v3.6.1medwmB037