Cla016536 (gene) Watermelon (97103) v1

Overview
NameCla016536
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionCyclic nucleotide-gated ion channel 2 (Fragment) (AHRD V1 ***- Q4VDM4_HORVD)
LocationChr11 : 22296982 .. 22297437 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTTCATAGTGTGTGGACGAGTAAAACGTAGCCAAAGCCTAAGCAAGGGTATGACAGCAACAAGTTGGATTGAACCAGGAGGATTTCTTGGCGATGAGCTGCTATCGTGGTGTCTTCGGCGCCCATTTCTGGAGAGACTTCCAGCTTCATCCGCTACATTTGTTTGCATTGAACCAACAGAAGCATTTGCCCTGAAAGCAGACCATCTGAAGTACATAACCGATCACTTCCGGTACAAATTCGCGAACGAGAGACTGAAGAGAACTGCAAGATATTACTCCTCCAACTGGAGAACATGGGCTGCTGTGAACATACAATTCGCGTGGCGTCGATACCGAAAGAGGATGAGACGGCCAGTGATAGCCGTGGTGGAAAATGGAAGCAATGAACGTAGGCTTTTGCAGTATGCTGCAATGTTCATGTCATTCAGGCCACATGACCATCTTGAATAG

mRNA sequence

ATGTTGTTCATAGTGTGTGGACGAGTAAAACGTAGCCAAAGCCTAAGCAAGGGTATGACAGCAACAAGTTGGATTGAACCAGGAGGATTTCTTGGCGATGAGCTGCTATCGTGGTGTCTTCGGCGCCCATTTCTGGAGAGACTTCCAGCTTCATCCGCTACATTTGTTTGCATTGAACCAACAGAAGCATTTGCCCTGAAAGCAGACCATCTGAAGTACATAACCGATCACTTCCGGTACAAATTCGCGAACGAGAGACTGAAGAGAACTGCAAGATATTACTCCTCCAACTGGAGAACATGGGCTGCTGTGAACATACAATTCGCGTGGCGTCGATACCGAAAGAGGATGAGACGGCCAGTGATAGCCGTGGTGGAAAATGGAAGCAATGAACGTAGGCTTTTGCAGTATGCTGCAATGTTCATGTCATTCAGGCCACATGACCATCTTGAATAG

Coding sequence (CDS)

ATGTTGTTCATAGTGTGTGGACGAGTAAAACGTAGCCAAAGCCTAAGCAAGGGTATGACAGCAACAAGTTGGATTGAACCAGGAGGATTTCTTGGCGATGAGCTGCTATCGTGGTGTCTTCGGCGCCCATTTCTGGAGAGACTTCCAGCTTCATCCGCTACATTTGTTTGCATTGAACCAACAGAAGCATTTGCCCTGAAAGCAGACCATCTGAAGTACATAACCGATCACTTCCGGTACAAATTCGCGAACGAGAGACTGAAGAGAACTGCAAGATATTACTCCTCCAACTGGAGAACATGGGCTGCTGTGAACATACAATTCGCGTGGCGTCGATACCGAAAGAGGATGAGACGGCCAGTGATAGCCGTGGTGGAAAATGGAAGCAATGAACGTAGGCTTTTGCAGTATGCTGCAATGTTCATGTCATTCAGGCCACATGACCATCTTGAATAG

Protein sequence

MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEPTEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRPVIAVVENGSNERRLLQYAAMFMSFRPHDHLE
Homology
[Close]
BLAST of Cla016536 vs. Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.1e-61
Identity = 120/159 (75.47%), Postives = 131/159 (82.39%), Query Frame = 1 

Query: 1   MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 60
           M+FI+ GRVKR QSLSKG+ ATS +EPGG+LGDELLSWCLRRPFL+RLP SSATFVC+E 
Sbjct: 568 MIFIMRGRVKRIQSLSKGVLATSTLEPGGYLGDELLSWCLRRPFLDRLPPSSATFVCLEN 627

Query: 61  TEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRP 120
            EAF+L ++ L+YITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQ AWRR RKR R  
Sbjct: 628 IEAFSLGSEDLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQMAWRRRRKRTRGE 687

Query: 121 VIA-----VVEN---GSNERRLLQYAAMFMSFRPHDHLE 152
            I      V EN   G++ERRLLQYAAMFMS RPHDHLE
Sbjct: 688 NIGGSMSPVSENSIEGNSERRLLQYAAMFMSIRPHDHLE 726

[Close]
BLAST of Cla016536 vs. Swiss-Prot
Match: CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2)

HSP 1 Score: 164.1 bits (414), Expect = 1.2e-39
Identity = 82/157 (52.23%), Postives = 104/157 (66.24%), Query Frame = 1 

Query: 1   MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 60
           MLF+V G ++ SQ L  G+ +   + PG F GDELLSWCLRRPF+ERLP SS+T V +E 
Sbjct: 533 MLFVVRGHLQSSQLLRDGVKSCCMLGPGNFSGDELLSWCLRRPFVERLPPSSSTLVTLET 592

Query: 61  TEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRM--- 120
           TEAF L A+ +KY+T HFRY F NE++KR+ARYYS  WRTWAAV +Q AWRRY+ R+   
Sbjct: 593 TEAFGLDAEDVKYVTQHFRYTFVNEKVKRSARYYSPGWRTWAAVAVQLAWRRYKHRLTLT 652

Query: 121 -------RRPVIAVVENGSNERRLLQYAAMFMSFRPH 148
                  RRP+      G ++ RL  YAA+  S +P+
Sbjct: 653 SLSFIRPRRPLSRCASLGEDKLRL--YAAILTSPKPN 687

[Close]
BLAST of Cla016536 vs. Swiss-Prot
Match: CNG17_ARATH (Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.3e-21
Identity = 54/133 (40.60%), Postives = 80/133 (60.15%), Query Frame = 1 

Query: 1   MLFIVCGRVKRSQSLS--KGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCI 60
           MLFI+ GR++ S +     G   +  + PG F G+ELLSW L       LP+S+ T   +
Sbjct: 518 MLFIIRGRLESSTTNGGRTGFFNSIILRPGDFCGEELLSWALLPKSTLNLPSSTRTVRAL 577

Query: 61  EPTEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMR 120
              EAFAL+A+ LK++ + FR +  +++L+ T R+YS +WRTWAA  IQ AWRRY++R+ 
Sbjct: 578 VEVEAFALRAEDLKFVANQFR-RLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKRRVM 637

Query: 121 RPVIAVVENGSNE 132
              +  +E+  NE
Sbjct: 638 ENNLTAIESMENE 649

[Close]
BLAST of Cla016536 vs. Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2)

HSP 1 Score: 98.6 bits (244), Expect = 6.2e-20
Identity = 51/132 (38.64%), Postives = 79/132 (59.85%), Query Frame = 1 

Query: 1   MLFIVCGRVKRSQSLS--KGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCI 60
           MLFI+ G+++ S +     G   +  + PG F G+ELL+W L       LP+S+ T   +
Sbjct: 518 MLFIIRGKLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTVNLPSSTRTVRAL 577

Query: 61  EPTEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMR 120
           E  EAFAL+A  LK++ + FR +  +++L+ T RYYS  WRTWAA  +Q AWRRY+++  
Sbjct: 578 EEVEAFALQAGDLKFVANQFR-RLHSKKLQHTFRYYSHQWRTWAACFVQVAWRRYKRKKL 637

Query: 121 RPVIAVVENGSN 131
              +++ E+ S+
Sbjct: 638 AKSLSLAESFSS 648

[Close]
BLAST of Cla016536 vs. Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 92.0 bits (227), Expect = 5.8e-18
Identity = 50/120 (41.67%), Postives = 68/120 (56.67%), Query Frame = 1 

Query: 1   MLFIVCGRVKR--SQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCI 60
           MLFI+ GR++   +     G    S ++ G F GDELL+W L       LP+S+ T   +
Sbjct: 551 MLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKAL 610

Query: 61  EPTEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMR 119
              EAFAL AD LK++   FR +  + +++ T R+YS  WRTWAA  +Q AWRRY KR +
Sbjct: 611 TEVEAFALIADELKFVASQFR-RLHSRQVQHTFRFYSQQWRTWAACFMQAAWRRYIKRKK 669

[Close]
BLAST of Cla016536 vs. TrEMBL
Match: A0A0A0KXJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G638350 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 4.9e-80
Identity = 147/151 (97.35%), Postives = 149/151 (98.68%), Query Frame = 1 

Query: 1   MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 60
           MLFIVCGRVKRSQSLSKGMTATS+IEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP
Sbjct: 538 MLFIVCGRVKRSQSLSKGMTATSFIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 597

Query: 61  TEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRP 120
           TEAFALKADHLKYITDHFRYKFANERLKRTAR+YSSNWRTWAAVNIQ AWRRYRKRMRRP
Sbjct: 598 TEAFALKADHLKYITDHFRYKFANERLKRTARFYSSNWRTWAAVNIQLAWRRYRKRMRRP 657

Query: 121 VIAVVENGSNERRLLQYAAMFMSFRPHDHLE 152
           VIAVVENGS ERRLLQYAAMFMSFRPHDHLE
Sbjct: 658 VIAVVENGSTERRLLQYAAMFMSFRPHDHLE 688

[Close]
BLAST of Cla016536 vs. TrEMBL
Match: A0A067K612_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19903 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 5.0e-69
Identity = 127/151 (84.11%), Postives = 138/151 (91.39%), Query Frame = 1 

Query: 1   MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 60
           M+FIV GR+KRSQSLSKGM ATS +EPGGFLGDELLSWCLRRPF++RLPASSATFVCIE 
Sbjct: 620 MVFIVRGRIKRSQSLSKGMLATSVLEPGGFLGDELLSWCLRRPFMDRLPASSATFVCIES 679

Query: 61  TEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRP 120
           TEAF L A+HL+YITDHFRYKFANERLKRTARYYSSNWRTWAAVN+QFAWRRYR R R P
Sbjct: 680 TEAFGLDANHLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNLQFAWRRYRTRTRGP 739

Query: 121 VIAVVENGSNERRLLQYAAMFMSFRPHDHLE 152
           VI   +NGS++RRLLQYAAMFMS RPHDHLE
Sbjct: 740 VITPTDNGSSDRRLLQYAAMFMSIRPHDHLE 770

[Close]
BLAST of Cla016536 vs. TrEMBL
Match: A0A0L9U203_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g019600 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 2.1e-67
Identity = 125/151 (82.78%), Postives = 136/151 (90.07%), Query Frame = 1 

Query: 1   MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 60
           M+FIV GR+KRSQSLSKGM A+S +EPGGFLGDELLSWCLRRPF++RLPASSATFVC+E 
Sbjct: 407 MVFIVRGRMKRSQSLSKGMVASSILEPGGFLGDELLSWCLRRPFIDRLPASSATFVCLES 466

Query: 61  TEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRP 120
            EAF L A+HL+YITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYR+R R P
Sbjct: 467 VEAFGLDAEHLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRQRTRGP 526

Query: 121 VIAVVENGSNERRLLQYAAMFMSFRPHDHLE 152
           V  V E+G  ERRLLQYAAMFMS RPHDHLE
Sbjct: 527 VTPVRESGGTERRLLQYAAMFMSIRPHDHLE 557

[Close]
BLAST of Cla016536 vs. TrEMBL
Match: A0A0S3RRS2_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G045000 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 2.1e-67
Identity = 125/151 (82.78%), Postives = 136/151 (90.07%), Query Frame = 1 

Query: 1   MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 60
           M+FIV GR+KRSQSLSKGM A+S +EPGGFLGDELLSWCLRRPF++RLPASSATFVC+E 
Sbjct: 560 MVFIVRGRMKRSQSLSKGMVASSILEPGGFLGDELLSWCLRRPFIDRLPASSATFVCLES 619

Query: 61  TEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRP 120
            EAF L A+HL+YITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYR+R R P
Sbjct: 620 VEAFGLDAEHLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRQRTRGP 679

Query: 121 VIAVVENGSNERRLLQYAAMFMSFRPHDHLE 152
           V  V E+G  ERRLLQYAAMFMS RPHDHLE
Sbjct: 680 VTPVRESGGTERRLLQYAAMFMSIRPHDHLE 710

[Close]
BLAST of Cla016536 vs. TrEMBL
Match: U5FP62_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s12550g PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 2.8e-67
Identity = 124/151 (82.12%), Postives = 135/151 (89.40%), Query Frame = 1 

Query: 1   MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 60
           M+FIV GR++ SQ+LSKGM ATS +EPGGFLGDELLSWCLRRPF++RLPASSATF CIE 
Sbjct: 568 MVFIVRGRIRSSQTLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFACIES 627

Query: 61  TEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRP 120
           TEAF L A+HL+YITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYR R R P
Sbjct: 628 TEAFGLDANHLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGP 687

Query: 121 VIAVVENGSNERRLLQYAAMFMSFRPHDHLE 152
           VI V E+G  +RRLLQYAAMFMS RPHDHLE
Sbjct: 688 VIPVTESGGTDRRLLQYAAMFMSIRPHDHLE 718

[Close]
BLAST of Cla016536 vs. NCBI nr
Match: gi|778707371|ref|XP_004141458.2| (PREDICTED: cyclic nucleotide-gated ion channel 2 [Cucumis sativus])

HSP 1 Score: 305.1 bits (780), Expect = 7.0e-80
Identity = 147/151 (97.35%), Postives = 149/151 (98.68%), Query Frame = 1 

Query: 1   MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 60
           MLFIVCGRVKRSQSLSKGMTATS+IEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP
Sbjct: 538 MLFIVCGRVKRSQSLSKGMTATSFIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 597

Query: 61  TEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRP 120
           TEAFALKADHLKYITDHFRYKFANERLKRTAR+YSSNWRTWAAVNIQ AWRRYRKRMRRP
Sbjct: 598 TEAFALKADHLKYITDHFRYKFANERLKRTARFYSSNWRTWAAVNIQLAWRRYRKRMRRP 657

Query: 121 VIAVVENGSNERRLLQYAAMFMSFRPHDHLE 152
           VIAVVENGS ERRLLQYAAMFMSFRPHDHLE
Sbjct: 658 VIAVVENGSTERRLLQYAAMFMSFRPHDHLE 688

[Close]
BLAST of Cla016536 vs. NCBI nr
Match: gi|659118887|ref|XP_008459361.1| (PREDICTED: cyclic nucleotide-gated ion channel 2 [Cucumis melo])

HSP 1 Score: 303.5 bits (776), Expect = 2.0e-79
Identity = 146/151 (96.69%), Postives = 148/151 (98.01%), Query Frame = 1 

Query: 1   MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 60
           MLFIVCGRVKRSQSLSKGMTATS+IEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP
Sbjct: 538 MLFIVCGRVKRSQSLSKGMTATSFIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 597

Query: 61  TEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRP 120
           TEAFALKADHLKYITDHFRYKFANERLKRTAR+YSSNWRTWAAVNIQ AWRRYRKRMRRP
Sbjct: 598 TEAFALKADHLKYITDHFRYKFANERLKRTARFYSSNWRTWAAVNIQLAWRRYRKRMRRP 657

Query: 121 VIAVVENGSNERRLLQYAAMFMSFRPHDHLE 152
            IAVVENGS ERRLLQYAAMFMSFRPHDHLE
Sbjct: 658 AIAVVENGSTERRLLQYAAMFMSFRPHDHLE 688

[Close]
BLAST of Cla016536 vs. NCBI nr
Match: gi|643714849|gb|KDP27204.1| (hypothetical protein JCGZ_19903 [Jatropha curcas])

HSP 1 Score: 268.5 bits (685), Expect = 7.2e-69
Identity = 127/151 (84.11%), Postives = 138/151 (91.39%), Query Frame = 1 

Query: 1   MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 60
           M+FIV GR+KRSQSLSKGM ATS +EPGGFLGDELLSWCLRRPF++RLPASSATFVCIE 
Sbjct: 620 MVFIVRGRIKRSQSLSKGMLATSVLEPGGFLGDELLSWCLRRPFMDRLPASSATFVCIES 679

Query: 61  TEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRP 120
           TEAF L A+HL+YITDHFRYKFANERLKRTARYYSSNWRTWAAVN+QFAWRRYR R R P
Sbjct: 680 TEAFGLDANHLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNLQFAWRRYRTRTRGP 739

Query: 121 VIAVVENGSNERRLLQYAAMFMSFRPHDHLE 152
           VI   +NGS++RRLLQYAAMFMS RPHDHLE
Sbjct: 740 VITPTDNGSSDRRLLQYAAMFMSIRPHDHLE 770

[Close]
BLAST of Cla016536 vs. NCBI nr
Match: gi|802715643|ref|XP_012084778.1| (PREDICTED: cyclic nucleotide-gated ion channel 2 [Jatropha curcas])

HSP 1 Score: 268.5 bits (685), Expect = 7.2e-69
Identity = 127/151 (84.11%), Postives = 138/151 (91.39%), Query Frame = 1 

Query: 1   MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 60
           M+FIV GR+KRSQSLSKGM ATS +EPGGFLGDELLSWCLRRPF++RLPASSATFVCIE 
Sbjct: 567 MVFIVRGRIKRSQSLSKGMLATSVLEPGGFLGDELLSWCLRRPFMDRLPASSATFVCIES 626

Query: 61  TEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRP 120
           TEAF L A+HL+YITDHFRYKFANERLKRTARYYSSNWRTWAAVN+QFAWRRYR R R P
Sbjct: 627 TEAFGLDANHLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNLQFAWRRYRTRTRGP 686

Query: 121 VIAVVENGSNERRLLQYAAMFMSFRPHDHLE 152
           VI   +NGS++RRLLQYAAMFMS RPHDHLE
Sbjct: 687 VITPTDNGSSDRRLLQYAAMFMSIRPHDHLE 717

[Close]
BLAST of Cla016536 vs. NCBI nr
Match: gi|743879112|ref|XP_011035830.1| (PREDICTED: cyclic nucleotide-gated ion channel 2 [Populus euphratica])

HSP 1 Score: 266.2 bits (679), Expect = 3.6e-68
Identity = 127/151 (84.11%), Postives = 135/151 (89.40%), Query Frame = 1 

Query: 1   MLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEP 60
           M+FIV GR+K SQSLSKGM ATS +EPGGFLGDELLSWCLRRPF++RLPASSATF CIE 
Sbjct: 568 MVFIVRGRIKSSQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFACIES 627

Query: 61  TEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRP 120
           TEAF L A+HL+YITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYR R R P
Sbjct: 628 TEAFGLDANHLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGP 687

Query: 121 VIAVVENGSNERRLLQYAAMFMSFRPHDHLE 152
           VI V E+G  ERRLLQYAAMFMS RPHDHLE
Sbjct: 688 VIPVTESGGTERRLLQYAAMFMSIRPHDHLE 718

The following BLAST results are available for this feature:
BLAST of Cla016536 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CNGC2_ARATH1.1e-6175.47Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1[more]
CNGC4_ARATH1.2e-3952.23Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2[more]
CNG17_ARATH4.3e-2140.60Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC1... [more]
CNG14_ARATH6.2e-2038.64Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC1... [more]
CNGC6_ARATH5.8e-1841.67Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 ... [more]
BLAST of Cla016536 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXJ7_CUCSA4.9e-8097.35Uncharacterized protein OS=Cucumis sativus GN=Csa_5G638350 PE=4 SV=1[more]
A0A067K612_JATCU5.0e-6984.11Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19903 PE=4 SV=1[more]
A0A0L9U203_PHAAN2.1e-6782.78Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g019600 PE=4 SV=1[more]
A0A0S3RRS2_PHAAN2.1e-6782.78Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G045000 PE=... [more]
U5FP62_POPTR2.8e-6782.12Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s12550g PE=4 SV=1[more]
BLAST of Cla016536 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778707371|ref|XP_004141458.2|7.0e-8097.35PREDICTED: cyclic nucleotide-gated ion channel 2 [Cucumis sativus][more]
gi|659118887|ref|XP_008459361.1|2.0e-7996.69PREDICTED: cyclic nucleotide-gated ion channel 2 [Cucumis melo][more]
gi|643714849|gb|KDP27204.1|7.2e-6984.11hypothetical protein JCGZ_19903 [Jatropha curcas][more]
gi|802715643|ref|XP_012084778.1|7.2e-6984.11PREDICTED: cyclic nucleotide-gated ion channel 2 [Jatropha curcas][more]
gi|743879112|ref|XP_011035830.1|3.6e-6884.11PREDICTED: cyclic nucleotide-gated ion channel 2 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR014710RmlC-like_jellyroll
IPR018490cNMP-bd-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034220 ion transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005216 ion channel activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU24099watermelon EST collection version 2.0transcribed_cluster
WMU36137watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU57676watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla016536Cla016536.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU24099WMU24099transcribed_cluster
WMU36137WMU36137transcribed_cluster
WMU57676WMU57676transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014710RmlC-like jelly roll foldGENE3DG3DSA:2.60.120.10coord: 1..78
score: 1.
IPR018490Cyclic nucleotide-binding-likeunknownSSF51206cAMP-binding domain-likecoord: 1..78
score: 1.2
NoneNo IPR availablePANTHERPTHR10217VOLTAGE AND LIGAND GATED POTASSIUM CHANNELcoord: 1..145
score: 8.2
NoneNo IPR availablePANTHERPTHR10217:SF501CYCLIC NUCLEOTIDE-GATED ION CHANNEL 2coord: 1..145
score: 8.2