Cla016256 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla016256
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr9 : 10652071 .. 10652553 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAACTAACCCACTCGGGTTTAAGATACTCACTTAAGGGTACTGTTCTGGTTGGAAAAAGAAAGGAACCGCTGCCGAGAGCCAAAATCCGAGTGAGAGCGAAACCCGAGCGAGAAGCGAGATTTGAGCGAGAGAGCGAGAGCCGAGAGAGCGGGAGGCAGCAATACAGCAAGAGCCTGACGGCTTGCGGCGATACCGGGCGCGGGGAACGTGAGTCGAGCGGGAAAGCGAGAGAGCGAGAGCGCGAGAGAGCGGAACCCAGCGAGTCAGCGATACCCCGAGAGCGTGAGGGCGATTTGGCGCGGGAGACCGTGAGGCGAGTGGGAGAAAGTGAGAGCGAGAGAGCGAGACGTCGCGAGAGTCAGCGAGAGCCCGAGAAACCGACAGCGATATTCTGGCACGAAAACGCGACACCCGACGTGCAACCTCCGGAAAAAGTCGGCGATGGAGAGAGAGAGATGGCGGGGGCAGAGGGAGACTGA

mRNA sequence

ATGCAACTAACCCACTCGGGTTTAAGATACTCACTTAAGGGTACTGTTCTGGTTGGAAAAAGAAAGGAACCGCTGCCGAGAGCCAAAATCCGAGTGAGAGCGAAACCCGAGCGAGAAGCGAGATTTGAGCGAGAGAGCGAGAGCCGAGAGAGCGGGAGGCAGCAATACAGCAAGAGCCTGACGGCTTGCGGCGATACCGGGCGCGGGGAACGTGAGTCGAGCGGGAAAGCGAGAGAGCGAGAGCGCGAGAGAGCGGAACCCAGCGAGTCAGCGATACCCCGAGAGCGTGAGGGCGATTTGGCGCGGGAGACCGTGAGGCGAGTGGGAGAAAGTGAGAGCGAGAGAGCGAGACGTCGCGAGAGTCAGCGAGAGCCCGAGAAACCGACAGCGATATTCTGGCACGAAAACGCGACACCCGACGTGCAACCTCCGGAAAAAGTCGGCGATGGAGAGAGAGAGATGGCGGGGGCAGAGGGAGACTGA

Coding sequence (CDS)

ATGCAACTAACCCACTCGGGTTTAAGATACTCACTTAAGGGTACTGTTCTGGTTGGAAAAAGAAAGGAACCGCTGCCGAGAGCCAAAATCCGAGTGAGAGCGAAACCCGAGCGAGAAGCGAGATTTGAGCGAGAGAGCGAGAGCCGAGAGAGCGGGAGGCAGCAATACAGCAAGAGCCTGACGGCTTGCGGCGATACCGGGCGCGGGGAACGTGAGTCGAGCGGGAAAGCGAGAGAGCGAGAGCGCGAGAGAGCGGAACCCAGCGAGTCAGCGATACCCCGAGAGCGTGAGGGCGATTTGGCGCGGGAGACCGTGAGGCGAGTGGGAGAAAGTGAGAGCGAGAGAGCGAGACGTCGCGAGAGTCAGCGAGAGCCCGAGAAACCGACAGCGATATTCTGGCACGAAAACGCGACACCCGACGTGCAACCTCCGGAAAAAGTCGGCGATGGAGAGAGAGAGATGGCGGGGGCAGAGGGAGACTGA

Protein sequence

MQLTHSGLRYSLKGTVLVGKRKEPLPRAKIRVRAKPEREARFERESESRESGRQQYSKSLTACGDTGRGERESSGKARERERERAEPSESAIPREREGDLARETVRRVGESESERARRRESQREPEKPTAIFWHENATPDVQPPEKVGDGEREMAGAEGD

Homology

[Close]

BLAST of Cla016256 vs. Swiss-Prot
Match: VCL21_ARATH (Vicilin-like seed storage protein At2g18540 OS=Arabidopsis thaliana GN=At2g18540 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.4e-06
Identity = 38/109 (34.86%), Postives = 52/109 (47.71%), Query Frame = 1


Query: 20  KRKEPLPRAKIRVRAKPEREARFERESESRESGRQQYSKSLTACGDTGRGERESSGKARE 79
           KR+E    AK R   + ER+ R E E+  RE  R++  +      +  +   E + +AR+
Sbjct: 460 KRREE-EEAKRREEEETERKKREEEEARKREEERKREEEEAKRREEERKKREEEAEQARK 519

Query: 80  RERERAEPSESAIPREREGD-LARETVRRVGESESERARRRESQREPEK 128
           RE ER +  E A  RE E     RE V R    E ER RR E  R+ E+
Sbjct: 520 REEEREKEEEMAKKREEERQRKEREEVERKRREEQERKRREEEARKREE 567

[Close]

BLAST of Cla016256 vs. TrEMBL
Match: D7L1S9_ARALL (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_674099 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.6e-07
Identity = 51/104 (49.04%), Postives = 60/104 (57.69%), Query Frame = 1


Query: 27  RAKIRVRAKPEREARFERE-SESRESGRQQYSKSLTACGDTGRGERESSG-KARERERER 86
           RA  R RA  ERE   ERE +  RESGR++ S      G+ GR ERES+G + RE ERE 
Sbjct: 184 RAGERARAG-ERERAGERERAGERESGRERES-----AGERGR-ERESAGERERESERES 243

Query: 87  AEPSESAIPREREGDLARET-VRRVGESESERARRRESQREPEK 128
           A    S   RERE + ARE    R  E ESERAR RE +R  E+
Sbjct: 244 ARERASERARERESERARERECERARERESERARERECERARER 280

[Close]

BLAST of Cla016256 vs. TrEMBL
Match: D7L1S9_ARALL (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_674099 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.2e-06
Identity = 54/154 (35.06%), Postives = 65/154 (42.21%), Query Frame = 1


Query: 19  GKRKEPLPRAKIRVRAKPEREARFERESE----------SRESGRQQYSKSLTACGDTGR 78
           G+ KE   R K   R K + E   E E E           RES R   S+S      +GR
Sbjct: 27  GRIKEESGRMKENERIKDDSERMKENEREWEFLRVARARERESERAGESES-----KSGR 86

Query: 79  GERESSGKARERE----RERAEPSESAIPREREGDLARETVRRVGESESERARRRESQRE 138
                SG+ RER     RER    ESA  RER G+ A ET      SE ER R RE + E
Sbjct: 87  ARERESGRERERAGESGRERERAGESARERERAGERASETRSLARASEREREREREGEGE 146

Query: 139 PEKPTAIFWHENATPDVQPPEKVGDGEREMAGAE 159
            E+                 E+ G+GERE AG +
Sbjct: 147 GER---------------EGEREGEGERERAGEQ 160

HSP 2 Score: 55.5 bits (132), Expect = 7.1e-05
Identity = 47/110 (42.73%), Postives = 57/110 (51.82%), Query Frame = 1


Query: 27  RAKIRVRAKPEREARFERE-SESRESGRQQYS-----KSLTACGDTGR------GERESS 86
           RA  R RA  ERE   ERE +  RESGR++ S     +   + G+  R          +S
Sbjct: 184 RAGERARAG-ERERAGERERAGERESGRERESAGERGRERESAGERERESERESARERAS 243

Query: 87  GKARERERERAEPSESAIPREREGDLARE-TVRRVGESESERARRRESQR 124
            +ARERE ERA   E    RERE + ARE    R  E ESE AR RES+R
Sbjct: 244 ERARERESERARERECERARERESERARERECERARERESESARERESER 292

HSP 3 Score: 49.3 bits (116), Expect = 5.1e-03
Identity = 47/137 (34.31%), Postives = 59/137 (43.07%), Query Frame = 1


Query: 25  LPRAKIRVRAKP-EREARFERESESRESGRQQYSKSLTACGDTGRGERESSGKARERERE 84
           L RA  R R +  E E   ERE E    G ++ +        +GR     SG+A ER   
Sbjct: 124 LARASEREREREREGEGEGEREGEREGEGERERAGEQERESRSGRAGERESGRAGERASG 183

Query: 85  RAEPSESAIPREREGDLARETVRRVG---ESESERARRRES----QREPEKPTAIFWHEN 144
           RA     A  RER G+  R   R  G   ES  ER R RES    +RE E+ +A    E 
Sbjct: 184 RAGERARAGERERAGERERAGERESGRERESAGERGRERESAGERERESERESA---RER 243

Query: 145 ATPDVQPPEKVGDGERE 154
           A+   +  E     ERE
Sbjct: 244 ASERARERESERARERE 257

HSP 4 Score: 48.1 bits (113), Expect = 1.1e-02
Identity = 53/152 (34.87%), Postives = 67/152 (44.08%), Query Frame = 1


Query: 30  IRVRAKPEREARFERESES-------RESGRQ-----QYSKSLTACGDTGRGERESSGK- 89
           +RV    ERE+    ESES       RESGR+     +  +     G++ R ERE +G+ 
Sbjct: 59  LRVARARERESERAGESESKSGRARERESGRERERAGESGRERERAGESAR-ERERAGER 118

Query: 90  -------ARERERERAEPSESAIPREREGDLARETVR-RVGESESE----RARRRESQRE 149
                  AR  ERER    E     EREG+   E  R R GE E E    RA  RES R 
Sbjct: 119 ASETRSLARASEREREREREGEGEGEREGEREGEGERERAGEQERESRSGRAGERESGRA 178

Query: 150 PEKPTAIFWHENATPDVQPPEKVGDGEREMAG 157
            E+ +       A    +  E+   GERE AG
Sbjct: 179 GERASG-----RAGERARAGERERAGERERAG 204

HSP 5 Score: 40.0 bits (92), Expect = 3.1e+00
Identity = 42/129 (32.56%), Postives = 56/129 (43.41%), Query Frame = 1


Query: 31  RVRAKPEREARFERESESRESGRQQYSKSLTACGDTGRGERESSGKARERERERA-EPSE 90
           RV    +RE +  ++   +E+GR +        G     ER      R +E ER  E   
Sbjct: 6   RVSGSLQRELKKMKDERMKENGRIKEES-----GRMKENERIKDDSERMKENEREWEFLR 65

Query: 91  SAIPREREGDLARETVRRVGESESERARRRESQREPEKPTAIFWHENATPDVQPPEKVGD 150
            A  RERE + A E+     ES+S RAR RES RE          E A    +  E+ G+
Sbjct: 66  VARARERESERAGES-----ESKSGRARERESGRE---------RERAGESGRERERAGE 115

Query: 151 G--EREMAG 157
              ERE AG
Sbjct: 126 SARERERAG 115

HSP 6 Score: 61.2 bits (147), Expect = 1.3e-06
Identity = 45/109 (41.28%), Postives = 56/109 (51.38%), Query Frame = 1


Query: 20  KRKEPLPRAKIRVRAKPEREARFERESESRESGRQQYSKSLTACGDTGRGERESSGKARE 79
           +R+    R + R R + ERE   ERE E RE  R++  +         RGERE   + RE
Sbjct: 95  ERERERERERERERER-ERERERERERERREREREREREK--------RGEREREERERE 154

Query: 80  RERERAEPSESAIPREREGDLARETVR-RVGESESERARRRESQREPEK 128
           RERER    E    RERE +  RE  R R  E E ER R RE +RE E+
Sbjct: 155 RERERERERERERERERERERERERERERERERERERERERERERERER 194

[Close]

BLAST of Cla016256 vs. TrEMBL
Match: A0A0S3SFD2_PHAAN (Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis GN=Vigan.07G014100 PE=4 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 5.6e-02
Identity = 33/89 (37.08%), Postives = 42/89 (47.19%), Query Frame = 1


Query: 39  EARFERESESRESGRQQYSKSLTACGDTGRGERESSGKARERERERAEPSESAIPREREG 98
           E   E+E E RE  R++  +      +  R ER    + RERERER E       RERE 
Sbjct: 16  EREREKERERRERKRRERKRERERERERERRERREREREREREREREE-------RERED 75

Query: 99  DLARETVRRVGESESERARRRESQREPEK 128
           +         GE E ER R RE +RE E+
Sbjct: 76  ER-----EEEGERERERERERERERERER 92

[Close]

BLAST of Cla016256 vs. NCBI nr
Match: gi|297836066|ref|XP_002885915.1| (predicted protein [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-06
Identity = 51/104 (49.04%), Postives = 60/104 (57.69%), Query Frame = 1


Query: 27  RAKIRVRAKPEREARFERE-SESRESGRQQYSKSLTACGDTGRGERESSG-KARERERER 86
           RA  R RA  ERE   ERE +  RESGR++ S      G+ GR ERES+G + RE ERE 
Sbjct: 184 RAGERARAG-ERERAGERERAGERESGRERES-----AGERGR-ERESAGERERESERES 243

Query: 87  AEPSESAIPREREGDLARET-VRRVGESESERARRRESQREPEK 128
           A    S   RERE + ARE    R  E ESERAR RE +R  E+
Sbjct: 244 ARERASERARERESERARERECERARERESERARERECERARER 280

[Close]

BLAST of Cla016256 vs. NCBI nr
Match: gi|297836066|ref|XP_002885915.1| (predicted protein [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 60.5 bits (145), Expect = 3.2e-06
Identity = 54/154 (35.06%), Postives = 65/154 (42.21%), Query Frame = 1


Query: 19  GKRKEPLPRAKIRVRAKPEREARFERESE----------SRESGRQQYSKSLTACGDTGR 78
           G+ KE   R K   R K + E   E E E           RES R   S+S      +GR
Sbjct: 27  GRIKEESGRMKENERIKDDSERMKENEREWEFLRVARARERESERAGESES-----KSGR 86

Query: 79  GERESSGKARERE----RERAEPSESAIPREREGDLARETVRRVGESESERARRRESQRE 138
                SG+ RER     RER    ESA  RER G+ A ET      SE ER R RE + E
Sbjct: 87  ARERESGRERERAGESGRERERAGESARERERAGERASETRSLARASEREREREREGEGE 146

Query: 139 PEKPTAIFWHENATPDVQPPEKVGDGEREMAGAE 159
            E+                 E+ G+GERE AG +
Sbjct: 147 GER---------------EGEREGEGERERAGEQ 160

HSP 2 Score: 55.5 bits (132), Expect = 1.0e-04
Identity = 47/110 (42.73%), Postives = 57/110 (51.82%), Query Frame = 1


Query: 27  RAKIRVRAKPEREARFERE-SESRESGRQQYS-----KSLTACGDTGR------GERESS 86
           RA  R RA  ERE   ERE +  RESGR++ S     +   + G+  R          +S
Sbjct: 184 RAGERARAG-ERERAGERERAGERESGRERESAGERGRERESAGERERESERESARERAS 243

Query: 87  GKARERERERAEPSESAIPREREGDLARE-TVRRVGESESERARRRESQR 124
            +ARERE ERA   E    RERE + ARE    R  E ESE AR RES+R
Sbjct: 244 ERARERESERARERECERARERESERARERECERARERESESARERESER 292

HSP 3 Score: 49.3 bits (116), Expect = 7.3e-03
Identity = 47/137 (34.31%), Postives = 59/137 (43.07%), Query Frame = 1


Query: 25  LPRAKIRVRAKP-EREARFERESESRESGRQQYSKSLTACGDTGRGERESSGKARERERE 84
           L RA  R R +  E E   ERE E    G ++ +        +GR     SG+A ER   
Sbjct: 124 LARASEREREREREGEGEGEREGEREGEGERERAGEQERESRSGRAGERESGRAGERASG 183

Query: 85  RAEPSESAIPREREGDLARETVRRVG---ESESERARRRES----QREPEKPTAIFWHEN 144
           RA     A  RER G+  R   R  G   ES  ER R RES    +RE E+ +A    E 
Sbjct: 184 RAGERARAGERERAGERERAGERESGRERESAGERGRERESAGERERESERESA---RER 243

Query: 145 ATPDVQPPEKVGDGERE 154
           A+   +  E     ERE
Sbjct: 244 ASERARERESERARERE 257

HSP 4 Score: 48.1 bits (113), Expect = 1.6e-02
Identity = 53/152 (34.87%), Postives = 67/152 (44.08%), Query Frame = 1


Query: 30  IRVRAKPEREARFERESES-------RESGRQ-----QYSKSLTACGDTGRGERESSGK- 89
           +RV    ERE+    ESES       RESGR+     +  +     G++ R ERE +G+ 
Sbjct: 59  LRVARARERESERAGESESKSGRARERESGRERERAGESGRERERAGESAR-ERERAGER 118

Query: 90  -------ARERERERAEPSESAIPREREGDLARETVR-RVGESESE----RARRRESQRE 149
                  AR  ERER    E     EREG+   E  R R GE E E    RA  RES R 
Sbjct: 119 ASETRSLARASEREREREREGEGEGEREGEREGEGERERAGEQERESRSGRAGERESGRA 178

Query: 150 PEKPTAIFWHENATPDVQPPEKVGDGEREMAG 157
            E+ +       A    +  E+   GERE AG
Sbjct: 179 GERASG-----RAGERARAGERERAGERERAG 204

HSP 5 Score: 40.0 bits (92), Expect = 4.4e+00
Identity = 42/129 (32.56%), Postives = 56/129 (43.41%), Query Frame = 1


Query: 31  RVRAKPEREARFERESESRESGRQQYSKSLTACGDTGRGERESSGKARERERERA-EPSE 90
           RV    +RE +  ++   +E+GR +        G     ER      R +E ER  E   
Sbjct: 6   RVSGSLQRELKKMKDERMKENGRIKEES-----GRMKENERIKDDSERMKENEREWEFLR 65

Query: 91  SAIPREREGDLARETVRRVGESESERARRRESQREPEKPTAIFWHENATPDVQPPEKVGD 150
            A  RERE + A E+     ES+S RAR RES RE          E A    +  E+ G+
Sbjct: 66  VARARERESERAGES-----ESKSGRARERESGRE---------RERAGESGRERERAGE 115

Query: 151 G--EREMAG 157
              ERE AG
Sbjct: 126 SARERERAG 115

HSP 6 Score: 61.2 bits (147), Expect = 1.9e-06
Identity = 45/109 (41.28%), Postives = 56/109 (51.38%), Query Frame = 1


Query: 20  KRKEPLPRAKIRVRAKPEREARFERESESRESGRQQYSKSLTACGDTGRGERESSGKARE 79
           +R+    R + R R + ERE   ERE E RE  R++  +         RGERE   + RE
Sbjct: 95  ERERERERERERERER-ERERERERERERREREREREREK--------RGEREREERERE 154

Query: 80  RERERAEPSESAIPREREGDLARETVR-RVGESESERARRRESQREPEK 128
           RERER    E    RERE +  RE  R R  E E ER R RE +RE E+
Sbjct: 155 RERERERERERERERERERERERERERERERERERERERERERERERER 194

[Close]

BLAST of Cla016256 vs. NCBI nr
Match: gi|965604362|dbj|BAT91538.1| (hypothetical protein VIGAN_07014100, partial [Vigna angularis var. angularis])

HSP 1 Score: 45.8 bits (107), Expect = 8.1e-02
Identity = 33/89 (37.08%), Postives = 42/89 (47.19%), Query Frame = 1


Query: 39  EARFERESESRESGRQQYSKSLTACGDTGRGERESSGKARERERERAEPSESAIPREREG 98
           E   E+E E RE  R++  +      +  R ER    + RERERER E       RERE 
Sbjct: 16  EREREKERERRERKRRERKRERERERERERRERREREREREREREREE-------RERED 75

Query: 99  DLARETVRRVGESESERARRRESQREPEK 128
           +         GE E ER R RE +RE E+
Sbjct: 76  ER-----EEEGERERERERERERERERER 92

The following BLAST results are available for this feature:

BLAST of Cla016256 vs. Swiss-Prot


Match Name	E-value	Identity	Description
VCL21_ARATH	2.4e-06	34.86	Vicilin-like seed storage protein At2g18540 OS=Arabidopsis thaliana GN=At2g18540...	[more]

BLAST of Cla016256 vs. TrEMBL


Match Name	E-value	Identity	Description
D7L1S9_ARALL	7.6e-07	49.04	Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_674099 PE=4 ...	[more]
D7L1S9_ARALL	2.2e-06	35.06	Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_674099 PE=4 ...	[more]
A0A0S3SFD2_PHAAN	5.6e-02	37.08	Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis GN=Vigan.07...	[more]

BLAST of Cla016256 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|297836066\|ref\|XP_002885915.1\|	1.1e-06	49.04	predicted protein [Arabidopsis lyrata subsp. lyrata]	[more]
gi\|297836066\|ref\|XP_002885915.1\|	3.2e-06	35.06	predicted protein [Arabidopsis lyrata subsp. lyrata]	[more]
gi\|965604362\|dbj\|BAT91538.1\|	8.1e-02	37.08	hypothetical protein VIGAN_07014100, partial [Vigna angularis var. angularis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla016256	Cla016256.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla016256	Silver-seed gourd	carwmB0776
Cla016256	Watermelon (97103) v2	wmwmbB041
Cla016256	Cucurbita maxima (Rimu)	cmawmB471
Cla016256	Cucurbita maxima (Rimu)	cmawmB547
Cla016256	Cucurbita moschata (Rifu)	cmowmB464
Cla016256	Cucurbita moschata (Rifu)	cmowmB537
Cla016256	Watermelon (Charleston Gray)	wcgwmB007
Cla016256	Cucurbita pepo (Zucchini)	cpewmB235
Cla016256	Cucurbita pepo (Zucchini)	cpewmB684