Cla016168 (gene) Watermelon (97103) v1

Overview
NameCla016168
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionGlycine cleavage system H protein 1 (AHRD V1 **** B6UHJ7_MAIZE); contains Interpro domain(s) IPR017453 Glycine cleavage H-protein, subgroup
LocationChr9 : 12622196 .. 12624087 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTTAGAATGTGGGCTTCTTCTACTGCCAATGCACTCAGACTCTCTTCTTCATCTAAAACCTATCTCTCTCCTTCATTCTCTCTCTCCAGATGCTTCTCCACTGGTAGTTTTCTGCTCTTTTCTATTTTGCATGCAAACTGTTTGTGTAAATGCCTCTGTGAAGTTTGAGTTTGGTTTTTACTCTCTTGGATATCGTTTTGTGCTGTTGTGTTGTTTAATTCTCATTTATGATTCATTTCTCATCTGGTATGATAAAAGAGGGGTTTTTTAATTTTATTTTTAGAAAGCTTATTGGTTGGATTTGCAGTTTTGGATGGGCTGAAGTATGCTTCTTCACATGAGTGGGTGAAGCATGAGGGCTCTGTTGCTACCGTTGGCATCACTGACCATGCTCAGGTGCTTTCTATTTTTTCCATGAAATTTATCATTTTCCAAATAATGTAACTCTTGTTTGCCTGAATTGTAGGTTAAATTGTAAGTTTCAGTCATCAACTTTTAGAATTGTGTCTATTTAGTTTCGTTCTTTGAAATGTTTATAATAAATCTTTTAAGTTCTTTAGAAAGTTCTTAATAAGTGTTTACACTTACATGCCTTTTCAATTTTGTGTCTTGTAGGCTTACATTGTTAACTTCGCTACTTTAATGGCAATGTAATAGGTTGACTATAAGGGTTGCATTGAAAATCAACCCGTGTCGTGTTAGTGTCAAACAAATTAATTGTTGGGTCATATTAGACTAAAATTGAAAGTTTTGAGACTCATAAAAACTTTTTATAATAAAGGACTAATCAGTCCCAAGGGGACTTAGCTTATAATTTTACCTAAATTTTACTACTTGGAATGATGTTTGGATGAGGAAACTTGGTAGTTACACGATTCCTTTTGCTGTTACTCCCTCTTGCCATGGAAACTGATTCAAGCTTTTGTTATAACAACTTTTACATCACTTCATTTTAGAAACTTTACATTTATACTTGGTATTCAAATTTGGGTTGGAAGCATTTTGTTTTCATGCATCTTCACAGGATCATCTGGGAGAAGTGGTGTTTGTGGATCTGCCAGAATCAGGTGGTTCAGTTTCTCAAGGTAAGAGCTTTGGAGCAGTGGAGAGTGTGAAAGCAACCAGTGATATCAACTCCCCAATCTCTGGTGAGATTGTTGAAGTTAACCCACAGCTTAAGGAATCTCCTGGTTTGGTAATTCCAAATCCTCAAATTCTTTTTGTCAATTCCTTGAACTCTGCATTTGCTTGATAATTCTAACAAAACTGTTGTTGGTTAAATCACGGTTTCGGTTCGTGTATTGTGCTAGTGTTTTCATTTGTGGGCTTCTGTCTGCTTCATTTTGGTTCATGTGTTTTTTCTATATGTACTTAATCTAGTCTTTGTACTTAGTAATTGTGTAATTAGATATTTAACATTTCGATTAGGTTATCATTCATAAAACTATAGAAACTAAGATGTGGTAAATTACATGTTACAAAAAGATGTGGTAAATTTAGTCTAAATATAATATTGTTGGAATGCCTTGAATCTGTAATCTGGTGCTCTGAATTACTAAGCATTAGACCTCGTTTATCTGATATTTCTCTCTAATAATAAATTGCTCTTTCCGTCTGTCCATGGATGTAGTTAGCACAGTGTTAGTGAACCATGCAAATCTTTGTCTTGATTTCTTTTTGTTCTTTATTCTTTGCTTGTCAATTTCGTTTCGGTCATAAAAAATAAACTATTGATTTATACTTCCACGTTCATGAAGATCAATTCAAGTCCATATGAAGGGGGATGGATGATAAAAGTGAAGCCAAGCAACCCAGCTGAATTAGATTCCTTGTTGGGACCAAAGGAATATACAAAGTTTTGTGAGGAAGAAGATGCAGCCCACTAA

mRNA sequence

ATGGCTCTTAGAATGTGGGCTTCTTCTACTGCCAATGCACTCAGACTCTCTTCTTCATCTAAAACCTATCTCTCTCCTTCATTCTCTCTCTCCAGATGCTTCTCCACTGTTTTGGATGGGCTGAAGTATGCTTCTTCACATGAGTGGGTGAAGCATGAGGGCTCTGTTGCTACCGTTGGCATCACTGACCATGCTCAGGATCATCTGGGAGAAGTGGTGTTTGTGGATCTGCCAGAATCAGGTGGTTCAGTTTCTCAAGGTAAGAGCTTTGGAGCAGTGGAGAGTGTGAAAGCAACCAGTGATATCAACTCCCCAATCTCTGGTGAGATTGTTGAAGTTAACCCACAGCTTAAGGAATCTCCTGGTTTGATCAATTCAAGTCCATATGAAGGGGGATGGATGATAAAAGTGAAGCCAAGCAACCCAGCTGAATTAGATTCCTTGTTGGGACCAAAGGAATATACAAAGTTTTGTGAGGAAGAAGATGCAGCCCACTAA

Coding sequence (CDS)

ATGGCTCTTAGAATGTGGGCTTCTTCTACTGCCAATGCACTCAGACTCTCTTCTTCATCTAAAACCTATCTCTCTCCTTCATTCTCTCTCTCCAGATGCTTCTCCACTGTTTTGGATGGGCTGAAGTATGCTTCTTCACATGAGTGGGTGAAGCATGAGGGCTCTGTTGCTACCGTTGGCATCACTGACCATGCTCAGGATCATCTGGGAGAAGTGGTGTTTGTGGATCTGCCAGAATCAGGTGGTTCAGTTTCTCAAGGTAAGAGCTTTGGAGCAGTGGAGAGTGTGAAAGCAACCAGTGATATCAACTCCCCAATCTCTGGTGAGATTGTTGAAGTTAACCCACAGCTTAAGGAATCTCCTGGTTTGATCAATTCAAGTCCATATGAAGGGGGATGGATGATAAAAGTGAAGCCAAGCAACCCAGCTGAATTAGATTCCTTGTTGGGACCAAAGGAATATACAAAGTTTTGTGAGGAAGAAGATGCAGCCCACTAA

Protein sequence

MALRMWASSTANALRLSSSSKTYLSPSFSLSRCFSTVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKESPGLINSSPYEGGWMIKVKPSNPAELDSLLGPKEYTKFCEEEDAAH
Homology
[Close]
BLAST of Cla016168 vs. Swiss-Prot
Match: GCSH_FLAAN (Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala GN=GDCSH PE=2 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 1.9e-75
Identity = 138/165 (83.64%), Postives = 151/165 (91.52%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSSSKTYLSPSFSLSRCFSTVLDGLKYASSHEWVKHEGSVATVG 60
           MALRMWASSTANALRLSS+++ + SP   LSRCFS+VLDGLKYA+SHEWVKHEGSVAT+G
Sbjct: 1   MALRMWASSTANALRLSSATRPHFSP---LSRCFSSVLDGLKYANSHEWVKHEGSVATIG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKES 120
           ITDHAQDHLGEVVFVDLPE+GGSV++   FGAVESVKATSD+NSPISGEIVEVN +L E+
Sbjct: 61  ITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSET 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLLGPKEYTKFCEEEDAAH 166
           PGLINSSPYE GWMIKVKPSNP+ELDSL+G KEYTKFCEEEDAAH
Sbjct: 121 PGLINSSPYEDGWMIKVKPSNPSELDSLMGAKEYTKFCEEEDAAH 162

[Close]
BLAST of Cla016168 vs. Swiss-Prot
Match: GCSH_PEA (Glycine cleavage system H protein, mitochondrial OS=Pisum sativum GN=GDCSH PE=1 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 5.7e-75
Identity = 135/165 (81.82%), Postives = 149/165 (90.30%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSSSKTYLSPSFSLSRCFSTVLDGLKYASSHEWVKHEGSVATVG 60
           MALRMWASSTANAL+LSSSS+ +LSP+FS+SRCFS VLDGLKYA SHEWVKHEGSVAT+G
Sbjct: 1   MALRMWASSTANALKLSSSSRLHLSPTFSISRCFSNVLDGLKYAPSHEWVKHEGSVATIG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKES 120
           ITDHAQDHLGEVVFV+LPE G SV++GK FGAVESVKATSD+NSPISGE++EVN  L   
Sbjct: 61  ITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGK 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLLGPKEYTKFCEEEDAAH 166
           PGLINSSPYE GWMIK+KP++P EL+SLLG KEYTKFCEEEDAAH
Sbjct: 121 PGLINSSPYEDGWMIKIKPTSPDELESLLGAKEYTKFCEEEDAAH 165

[Close]
BLAST of Cla016168 vs. Swiss-Prot
Match: GCSH3_ARATH (Glycine cleavage system H protein 3, mitochondrial OS=Arabidopsis thaliana GN=GDH3 PE=1 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 7.4e-75
Identity = 137/166 (82.53%), Postives = 155/166 (93.37%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSS-SKTYLSPSFSLSRCFSTVLDGLKYASSHEWVKHEGSVATV 60
           MALRMWASSTANAL+LSSS SK++L P+FS+SRCFS+VL+GLKYA+SHEWVKHEGSVAT+
Sbjct: 1   MALRMWASSTANALKLSSSASKSHLLPAFSISRCFSSVLEGLKYANSHEWVKHEGSVATI 60

Query: 61  GITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKE 120
           GITDHAQDHLGEVVFV+LPE+  SVS+ KSFGAVESVKATS+I SPISGE++EVN +L E
Sbjct: 61  GITDHAQDHLGEVVFVELPEANSSVSKEKSFGAVESVKATSEILSPISGEVIEVNTKLTE 120

Query: 121 SPGLINSSPYEGGWMIKVKPSNPAELDSLLGPKEYTKFCEEEDAAH 166
           SPGLINSSPYE GWMIKVKPS+PAEL++L+GPKEYTKFCEEEDAAH
Sbjct: 121 SPGLINSSPYEDGWMIKVKPSSPAELEALMGPKEYTKFCEEEDAAH 166

[Close]
BLAST of Cla016168 vs. Swiss-Prot
Match: GCSH_FLAPR (Glycine cleavage system H protein, mitochondrial OS=Flaveria pringlei GN=GDCSH PE=2 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.3e-74
Identity = 136/165 (82.42%), Postives = 151/165 (91.52%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSSSKTYLSPSFSLSRCFSTVLDGLKYASSHEWVKHEGSVATVG 60
           MALR+WASSTANALRLSS+++ + SP   LSRCFS+VLDGLKYA+SHEWVKHEGSVAT+G
Sbjct: 1   MALRIWASSTANALRLSSATRPHFSP---LSRCFSSVLDGLKYANSHEWVKHEGSVATIG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKES 120
           ITDHAQDHLGEVVFVDLPE+GGSV++   FGAVESVKATSD+NSPISGEIVEVN +L E+
Sbjct: 61  ITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSET 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLLGPKEYTKFCEEEDAAH 166
           PGLINSSPYE GWMIKVKPSNP+ELDSL+G KEYTKFCEEED+AH
Sbjct: 121 PGLINSSPYEDGWMIKVKPSNPSELDSLMGAKEYTKFCEEEDSAH 162

[Close]
BLAST of Cla016168 vs. Swiss-Prot
Match: GCSH1_ARATH (Glycine cleavage system H protein 1, mitochondrial OS=Arabidopsis thaliana GN=GDH1 PE=1 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 1.8e-73
Identity = 140/166 (84.34%), Postives = 152/166 (91.57%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSS-SKTYLSPSFSLSRCFSTVLDGLKYASSHEWVKHEGSVATV 60
           MALRMWASSTANAL+LSSS SK++LSP FS SRCFSTVL+GLKYA+SHEWVKHEGSVAT+
Sbjct: 1   MALRMWASSTANALKLSSSVSKSHLSP-FSFSRCFSTVLEGLKYANSHEWVKHEGSVATI 60

Query: 61  GITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKE 120
           GIT HAQDHLGEVVFV+LPE   SVS+ KSFGAVESVKATS+I SPISGEI+EVN +L E
Sbjct: 61  GITAHAQDHLGEVVFVELPEDNTSVSKEKSFGAVESVKATSEILSPISGEIIEVNKKLTE 120

Query: 121 SPGLINSSPYEGGWMIKVKPSNPAELDSLLGPKEYTKFCEEEDAAH 166
           SPGLINSSPYE GWMIKVKPS+PAEL+SL+GPKEYTKFCEEEDAAH
Sbjct: 121 SPGLINSSPYEDGWMIKVKPSSPAELESLMGPKEYTKFCEEEDAAH 165

[Close]
BLAST of Cla016168 vs. TrEMBL
Match: A0A0A0LI67_CUCSA (Glycine cleavage system h protein OS=Cucumis sativus GN=Csa_3G903520 PE=3 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 5.0e-86
Identity = 161/165 (97.58%), Postives = 163/165 (98.79%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSSSKTYLSPSFSLSRCFSTVLDGLKYASSHEWVKHEGSVATVG 60
           MALRMWASSTANAL+LSSSSKT+LSPSFSLSRCFSTVLDGLKYASSHEWVKHEGSVATVG
Sbjct: 1   MALRMWASSTANALKLSSSSKTHLSPSFSLSRCFSTVLDGLKYASSHEWVKHEGSVATVG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKES 120
           ITDHAQDHLGEVVFVDLPESG SVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKES
Sbjct: 61  ITDHAQDHLGEVVFVDLPESGSSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKES 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLLGPKEYTKFCEEEDAAH 166
           PGLINSSPYEGGWMIKVKPSNP ELDSLLGPKEYTKFCEEEDAAH
Sbjct: 121 PGLINSSPYEGGWMIKVKPSNPGELDSLLGPKEYTKFCEEEDAAH 165

[Close]
BLAST of Cla016168 vs. TrEMBL
Match: A0A061GAI7_THECC (Single hybrid motif superfamily protein OS=Theobroma cacao GN=TCM_015756 PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.1e-77
Identity = 141/165 (85.45%), Postives = 158/165 (95.76%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSSSKTYLSPSFSLSRCFSTVLDGLKYASSHEWVKHEGSVATVG 60
           MALRMWASSTANAL++S +SK +LSP+FSLSRCFSTVLDGLKYA+SHEWVKHEGSVAT+G
Sbjct: 1   MALRMWASSTANALKISCASKAHLSPAFSLSRCFSTVLDGLKYANSHEWVKHEGSVATIG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKES 120
           ITDHAQDHLGEVVFVDLPE GGSVSQGK FGAVESVKATSD+NSPISGE+VEVN +L E+
Sbjct: 61  ITDHAQDHLGEVVFVDLPEPGGSVSQGKGFGAVESVKATSDVNSPISGEVVEVNSKLTEA 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLLGPKEYTKFCEEEDAAH 166
           PGLINSSPYE GW+IKVKPS+P+EL+SL+GPKEYTKFCEEEDA+H
Sbjct: 121 PGLINSSPYEDGWIIKVKPSSPSELESLMGPKEYTKFCEEEDASH 165

[Close]
BLAST of Cla016168 vs. TrEMBL
Match: A5BA00_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038357 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 4.2e-77
Identity = 141/165 (85.45%), Postives = 156/165 (94.55%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSSSKTYLSPSFSLSRCFSTVLDGLKYASSHEWVKHEGSVATVG 60
           MALRMWASSTANALR+S +SK ++SP+FSLSRCFS+VLDGLKYA+SHEWVKHEGSVAT+G
Sbjct: 1   MALRMWASSTANALRVSCASKAHVSPAFSLSRCFSSVLDGLKYATSHEWVKHEGSVATIG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKES 120
           ITDHAQDHLGEVVFV+LPE GGSVS+G  FGAVESVKATSDINSPISGE+VEVN +L ES
Sbjct: 61  ITDHAQDHLGEVVFVELPEPGGSVSKGNGFGAVESVKATSDINSPISGEVVEVNSKLSES 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLLGPKEYTKFCEEEDAAH 166
           PGLINSSPYE GWMIKVKP NP+EL+SL+GPKEYTKFCEEEDAAH
Sbjct: 121 PGLINSSPYEDGWMIKVKPGNPSELESLMGPKEYTKFCEEEDAAH 165

[Close]
BLAST of Cla016168 vs. TrEMBL
Match: D7TTY4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g01120 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 7.2e-77
Identity = 139/165 (84.24%), Postives = 157/165 (95.15%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSSSKTYLSPSFSLSRCFSTVLDGLKYASSHEWVKHEGSVATVG 60
           MALRMWASSTANALR+S +SK ++SP+FSLSRCFS+VLDGLKYA+SHEWVKHEGSVAT+G
Sbjct: 1   MALRMWASSTANALRVSCASKAHVSPAFSLSRCFSSVLDGLKYATSHEWVKHEGSVATIG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKES 120
           ITDHAQDHLGEVVFV++PE GGSVS+G  FGAVESVKATSD+NSPISGE+VEVN +L E+
Sbjct: 61  ITDHAQDHLGEVVFVEIPEPGGSVSKGNGFGAVESVKATSDVNSPISGEVVEVNSKLSEA 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLLGPKEYTKFCEEEDAAH 166
           PGLINSSPYE GWMIKVKPSNP+EL+SL+GPKEYTKFCEEEDAAH
Sbjct: 121 PGLINSSPYEDGWMIKVKPSNPSELESLMGPKEYTKFCEEEDAAH 165

[Close]
BLAST of Cla016168 vs. TrEMBL
Match: M5WVV1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012546mg PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.4e-75
Identity = 140/165 (84.85%), Postives = 155/165 (93.94%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSSSKTYLSPSFSLSRCFSTVLDGLKYASSHEWVKHEGSVATVG 60
           MALRMWASSTANALR+SS+SK +LSP+FS SRCFS+VL+GLKYASSHEWVKHEGSVAT+G
Sbjct: 1   MALRMWASSTANALRISSASKAHLSPAFSFSRCFSSVLEGLKYASSHEWVKHEGSVATIG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKES 120
           ITDHAQDHLGEVVFV+LPE+G SVS G  FGAVESVKATSDINSPISG++VEVN +L ES
Sbjct: 61  ITDHAQDHLGEVVFVELPEAGRSVSAGVGFGAVESVKATSDINSPISGDVVEVNSKLTES 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLLGPKEYTKFCEEEDAAH 166
           PGLINSSPYE GWMIK+KPSNP+EL+SLLG KEYTKFCEEEDAAH
Sbjct: 121 PGLINSSPYEDGWMIKIKPSNPSELESLLGAKEYTKFCEEEDAAH 165

[Close]
BLAST of Cla016168 vs. NCBI nr
Match: gi|449461527|ref|XP_004148493.1| (PREDICTED: glycine cleavage system H protein 3, mitochondrial [Cucumis sativus])

HSP 1 Score: 325.1 bits (832), Expect = 7.1e-86
Identity = 161/165 (97.58%), Postives = 163/165 (98.79%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSSSKTYLSPSFSLSRCFSTVLDGLKYASSHEWVKHEGSVATVG 60
           MALRMWASSTANAL+LSSSSKT+LSPSFSLSRCFSTVLDGLKYASSHEWVKHEGSVATVG
Sbjct: 1   MALRMWASSTANALKLSSSSKTHLSPSFSLSRCFSTVLDGLKYASSHEWVKHEGSVATVG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKES 120
           ITDHAQDHLGEVVFVDLPESG SVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKES
Sbjct: 61  ITDHAQDHLGEVVFVDLPESGSSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKES 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLLGPKEYTKFCEEEDAAH 166
           PGLINSSPYEGGWMIKVKPSNP ELDSLLGPKEYTKFCEEEDAAH
Sbjct: 121 PGLINSSPYEGGWMIKVKPSNPGELDSLLGPKEYTKFCEEEDAAH 165

[Close]
BLAST of Cla016168 vs. NCBI nr
Match: gi|659131962|ref|XP_008465945.1| (PREDICTED: glycine cleavage system H protein, mitochondrial [Cucumis melo])

HSP 1 Score: 323.9 bits (829), Expect = 1.6e-85
Identity = 160/165 (96.97%), Postives = 163/165 (98.79%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSSSKTYLSPSFSLSRCFSTVLDGLKYASSHEWVKHEGSVATVG 60
           MALRMWASSTANAL+LSSSSKT+LSPSFSLSRCFSTVLDGLKYASSHEWVKHEGSVATVG
Sbjct: 1   MALRMWASSTANALKLSSSSKTHLSPSFSLSRCFSTVLDGLKYASSHEWVKHEGSVATVG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKES 120
           ITDHAQDHLGEVVFVDLPESG SVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKE+
Sbjct: 61  ITDHAQDHLGEVVFVDLPESGSSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKET 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLLGPKEYTKFCEEEDAAH 166
           PGLINSSPYEGGWMIKVKPSNP ELDSLLGPKEYTKFCEEEDAAH
Sbjct: 121 PGLINSSPYEGGWMIKVKPSNPGELDSLLGPKEYTKFCEEEDAAH 165

[Close]
BLAST of Cla016168 vs. NCBI nr
Match: gi|694396308|ref|XP_009373439.1| (PREDICTED: glycine cleavage system H protein 3, mitochondrial-like [Pyrus x bretschneideri])

HSP 1 Score: 301.6 bits (771), Expect = 8.4e-79
Identity = 144/165 (87.27%), Postives = 161/165 (97.58%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSSSKTYLSPSFSLSRCFSTVLDGLKYASSHEWVKHEGSVATVG 60
           MALR+WASSTANALR+S++SK++LSP+FSLSRCFSTVLDGLKYASSHEWVKHEGSVAT+G
Sbjct: 1   MALRLWASSTANALRISTASKSHLSPAFSLSRCFSTVLDGLKYASSHEWVKHEGSVATIG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKES 120
           ITDHAQDHLGEVVFV+LPE+G SVSQG SFGAVESVKATSD+NSPISGE+VEVN +L ES
Sbjct: 61  ITDHAQDHLGEVVFVELPEAGRSVSQGGSFGAVESVKATSDVNSPISGEVVEVNSKLTES 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLLGPKEYTKFCEEEDAAH 166
           PGLINSSPYEGGWMIK+KPS+P+EL+SLLGPKEYTKFCEEEDAAH
Sbjct: 121 PGLINSSPYEGGWMIKIKPSSPSELESLLGPKEYTKFCEEEDAAH 165

[Close]
BLAST of Cla016168 vs. NCBI nr
Match: gi|694408602|ref|XP_009378975.1| (PREDICTED: glycine cleavage system H protein 3, mitochondrial [Pyrus x bretschneideri])

HSP 1 Score: 300.1 bits (767), Expect = 2.5e-78
Identity = 144/165 (87.27%), Postives = 160/165 (96.97%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSSSKTYLSPSFSLSRCFSTVLDGLKYASSHEWVKHEGSVATVG 60
           MALR+WASSTANALR+S++SK++LSP+FSLSRCFSTVLDGLKYASSHEWVKHEGSVAT+G
Sbjct: 1   MALRLWASSTANALRISTASKSHLSPAFSLSRCFSTVLDGLKYASSHEWVKHEGSVATIG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKES 120
           ITDHAQDHLGEVVFV+LPESG SVSQG SFGAVESVKATSD+NSPISGE+VEVN +L ES
Sbjct: 61  ITDHAQDHLGEVVFVELPESGRSVSQGGSFGAVESVKATSDVNSPISGEVVEVNSKLTES 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLLGPKEYTKFCEEEDAAH 166
           PGLINSSPYE GWMIK+KPS+P+EL+SLLGPKEYTKFCEEEDAAH
Sbjct: 121 PGLINSSPYEDGWMIKIKPSSPSELESLLGPKEYTKFCEEEDAAH 165

[Close]
BLAST of Cla016168 vs. NCBI nr
Match: gi|658011635|ref|XP_008341065.1| (PREDICTED: glycine cleavage system H protein 3, mitochondrial-like [Malus domestica])

HSP 1 Score: 298.9 bits (764), Expect = 5.5e-78
Identity = 143/165 (86.67%), Postives = 160/165 (96.97%), Query Frame = 1 

Query: 1   MALRMWASSTANALRLSSSSKTYLSPSFSLSRCFSTVLDGLKYASSHEWVKHEGSVATVG 60
           MALR+WASSTANALR+S++SK++LSP+FSLSRCFSTVLDGLKYASSHEWVKHEGSVAT+G
Sbjct: 1   MALRLWASSTANALRISTASKSHLSPAFSLSRCFSTVLDGLKYASSHEWVKHEGSVATIG 60

Query: 61  ITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKES 120
           ITDHAQDHLGEVVFV+LPESG SVSQG SFGAVESVKATSD+NSPISG++VEVN +L ES
Sbjct: 61  ITDHAQDHLGEVVFVELPESGRSVSQGGSFGAVESVKATSDVNSPISGQVVEVNSKLTES 120

Query: 121 PGLINSSPYEGGWMIKVKPSNPAELDSLLGPKEYTKFCEEEDAAH 166
           PGLINSSPYE GWMIK+KPS+P+EL+SLLGPKEYTKFCEEEDAAH
Sbjct: 121 PGLINSSPYEDGWMIKIKPSSPSELESLLGPKEYTKFCEEEDAAH 165

The following BLAST results are available for this feature:
BLAST of Cla016168 vs. Swiss-Prot
Match NameE-valueIdentityDescription
GCSH_FLAAN1.9e-7583.64Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala GN=GDCSH PE... [more]
GCSH_PEA5.7e-7581.82Glycine cleavage system H protein, mitochondrial OS=Pisum sativum GN=GDCSH PE=1 ... [more]
GCSH3_ARATH7.4e-7582.53Glycine cleavage system H protein 3, mitochondrial OS=Arabidopsis thaliana GN=GD... [more]
GCSH_FLAPR1.3e-7482.42Glycine cleavage system H protein, mitochondrial OS=Flaveria pringlei GN=GDCSH P... [more]
GCSH1_ARATH1.8e-7384.34Glycine cleavage system H protein 1, mitochondrial OS=Arabidopsis thaliana GN=GD... [more]
BLAST of Cla016168 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LI67_CUCSA5.0e-8697.58Glycine cleavage system h protein OS=Cucumis sativus GN=Csa_3G903520 PE=3 SV=1[more]
A0A061GAI7_THECC1.1e-7785.45Single hybrid motif superfamily protein OS=Theobroma cacao GN=TCM_015756 PE=3 SV... [more]
A5BA00_VITVI4.2e-7785.45Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038357 PE=3 SV=1[more]
D7TTY4_VITVI7.2e-7784.24Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g01120 PE=3 SV=... [more]
M5WVV1_PRUPE1.4e-7584.85Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012546mg PE=3 SV=1[more]
BLAST of Cla016168 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449461527|ref|XP_004148493.1|7.1e-8697.58PREDICTED: glycine cleavage system H protein 3, mitochondrial [Cucumis sativus][more]
gi|659131962|ref|XP_008465945.1|1.6e-8596.97PREDICTED: glycine cleavage system H protein, mitochondrial [Cucumis melo][more]
gi|694396308|ref|XP_009373439.1|8.4e-7987.27PREDICTED: glycine cleavage system H protein 3, mitochondrial-like [Pyrus x bret... [more]
gi|694408602|ref|XP_009378975.1|2.5e-7887.27PREDICTED: glycine cleavage system H protein 3, mitochondrial [Pyrus x bretschne... [more]
gi|658011635|ref|XP_008341065.1|5.5e-7886.67PREDICTED: glycine cleavage system H protein 3, mitochondrial-like [Malus domest... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000089Biotin_lipoyl
IPR002930GCV_H
IPR0030162-oxoA_DH_lipoyl-BS
IPR011053Single_hybrid_motif
IPR017453GCV_H_sub
Vocabulary: Cellular Component
TermDefinition
GO:0005960glycine cleavage complex
Vocabulary: Biological Process
TermDefinition
GO:0019464glycine decarboxylation via glycine cleavage system
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019464 glycine decarboxylation via glycine cleavage system
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0032259 methylation
biological_process GO:0006566 threonine metabolic process
cellular_component GO:0005960 glycine cleavage complex
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003674 molecular_function
molecular_function GO:0004047 aminomethyltransferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla016168Cla016168.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000089Biotin/lipoyl attachmentPROFILEPS50968BIOTINYL_LIPOYLcoord: 56..138
score: 27
IPR002930Glycine cleavage system H-proteinHAMAPMF_00272GcvHcoord: 38..159
score: 28
IPR002930Glycine cleavage system H-proteinPANTHERPTHR11715GLYCINE CLEAVAGE SYSTEM H PROTEINcoord: 1..165
score: 2.0E
IPR002930Glycine cleavage system H-proteinPFAMPF01597GCV_Hcoord: 41..160
score: 8.5
IPR0030162-oxo acid dehydrogenase, lipoyl-binding sitePROSITEPS00189LIPOYLcoord: 81..110
scor
IPR011053Single hybrid motifunknownSSF51230Single hybrid motifcoord: 37..160
score: 1.96
IPR017453Glycine cleavage system H-protein, subgroupTIGRFAMsTIGR00527TIGR00527coord: 39..162
score: 2.2
NoneNo IPR availableGENE3DG3DSA:2.40.50.100coord: 40..161
score: 1.0
NoneNo IPR availablePANTHERPTHR11715:SF1GLYCINE CLEAVAGE SYSTEM H PROTEIN 3, MITOCHONDRIALcoord: 1..165
score: 2.0E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla016168Cla97C09G175040Watermelon (97103) v2wmwmbB041
Cla016168ClCG09G012170Watermelon (Charleston Gray)wcgwmB007
Cla016168CmoCh19G004700Cucurbita moschata (Rifu)cmowmB469
Cla016168Lsi05G000670Bottle gourd (USVL1VR-Ls)lsiwmB347
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla016168Wax gourdwgowmB004
Cla016168Wax gourdwgowmB168
Cla016168Watermelon (97103) v1wmwmB007
Cla016168Watermelon (97103) v1wmwmB020
Cla016168Cucumber (Gy14) v1cgywmB561
Cla016168Cucumber (Gy14) v1cgywmB582
Cla016168Cucurbita maxima (Rimu)cmawmB476
Cla016168Cucurbita maxima (Rimu)cmawmB547
Cla016168Cucurbita moschata (Rifu)cmowmB537
Cla016168Wild cucumber (PI 183967)cpiwmB183
Cla016168Wild cucumber (PI 183967)cpiwmB184
Cla016168Melon (DHL92) v3.5.1mewmB342
Cla016168Melon (DHL92) v3.5.1mewmB444
Cla016168Cucumber (Chinese Long) v2cuwmB187
Cla016168Watermelon (Charleston Gray)wcgwmB045
Cla016168Cucumber (Chinese Long) v2cuwmB180
Cla016168Cucumber (Chinese Long) v2cuwmB181
Cla016168Cucurbita pepo (Zucchini)cpewmB240
Cla016168Cucurbita pepo (Zucchini)cpewmB684
Cla016168Bottle gourd (USVL1VR-Ls)lsiwmB344
Cla016168Bottle gourd (USVL1VR-Ls)lsiwmB424
Cla016168Cucumber (Gy14) v2cgybwmB176
Cla016168Cucumber (Gy14) v2cgybwmB170
Cla016168Cucumber (Gy14) v2cgybwmB171
Cla016168Melon (DHL92) v3.6.1medwmB340
Cla016168Melon (DHL92) v3.6.1medwmB430
Cla016168Melon (DHL92) v3.6.1medwmB431
Cla016168Silver-seed gourdcarwmB0280
Cla016168Silver-seed gourdcarwmB0776
Cla016168Cucumber (Chinese Long) v3cucwmB002
Cla016168Cucumber (Chinese Long) v3cucwmB192
Cla016168Cucumber (Chinese Long) v3cucwmB193
Cla016168Cucumber (Chinese Long) v3cucwmB199
Cla016168Watermelon (97103) v2wmwmbB009