Cla016154 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla016154
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ty3-gypsy retrotransposon protein (AHRD V1 ***- E5GCP6_CUCME)
Location	Chr9 : 12968270 .. 12968527 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTCCAAGAAAGTTGCATCCCAAGCTCCTGCTGCTAGCGACATTTACATAGGAACCATCACCCGCGATCGCTTAAAGAGGGTTGTGCAAGAGAAGGAACAAGGTTCCGTCATCATGGAGAACGTCTGGAGGTGGTTAACGGAATCCCCTAAAGGCGGGATCGTCATTAAAGAAAATCCAGTGTCTGACAACCCTGCTCCCGCTTCTGACCATTCGAGAAAGAATCACACCCTGATAGTCTGTCATGATGGTTGA

mRNA sequence

ATGACCTCCAAGAAAGTTGCATCCCAAGCTCCTGCTGCTAGCGACATTTACATAGGAACCATCACCCGCGATCGCTTAAAGAGGGTTGTGCAAGAGAAGGAACAAGGTTCCGTCATCATGGAGAACGTCTGGAGGTGGTTAACGGAATCCCCTAAAGGCGGGATCGTCATTAAAGAAAATCCAGTGTCTGACAACCCTGCTCCCGCTTCTGACCATTCGAGAAAGAATCACACCCTGATAGTCTGTCATGATGGTTGA

Coding sequence (CDS)

ATGACCTCCAAGAAAGTTGCATCCCAAGCTCCTGCTGCTAGCGACATTTACATAGGAACCATCACCCGCGATCGCTTAAAGAGGGTTGTGCAAGAGAAGGAACAAGGTTCCGTCATCATGGAGAACGTCTGGAGGTGGTTAACGGAATCCCCTAAAGGCGGGATCGTCATTAAAGAAAATCCAGTGTCTGACAACCCTGCTCCCGCTTCTGACCATTCGAGAAAGAATCACACCCTGATAGTCTGTCATGATGGTTGA

Protein sequence

MTSKKVASQAPAASDIYIGTITRDRLKRVVQEKEQGSVIMENVWRWLTESPKGGIVIKENPVSDNPAPASDHSRKNHTLIVCHDG

Homology

[Close]

BLAST of Cla016154 vs. TrEMBL
Match: E5GCE3_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-11
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 1


Query: 1  MTSKKVASQAPAASDIYIGTITRDRLKRVVQEKEQGSVIMENVWRWLTESPKGGIVIKEN 60
          M  +KVAS+A   +D Y G +T+   KR +QE+EQ SV+ +  W  L ESPKGGI I+EN
Sbjct: 1  MAPRKVASKATVTNDSYTGLVTQSHSKRSIQEQEQSSVLKKKSWEQLIESPKGGINIREN 60

Query: 61 PVSDNPAPASDHSRKNHTLIV 82
          P+ +N  PAS+ S K   L V
Sbjct: 61 PLFNNSTPASNLSDKESHLEV 81

[Close]

BLAST of Cla016154 vs. TrEMBL
Match: E5GCP6_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-09
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 1


Query: 1  MTSKKVASQAPAASDIYIGTITRDRLKRVVQEKEQ--GSVIMENVWRWLTESPKGGIVIK 60
          M + K AS++  ASD YIG +T+  LKR +QE+EQ  G V+ +     L ESPKGGI+I+
Sbjct: 1  MATNKAASKSSVASDSYIGLVTQSHLKRSMQEQEQEQGFVLKKKSLEQLIESPKGGIIIR 60

Query: 61 ENPVSDNPAPASDHSRK 76
          +NP+ +N  PAS+ S K
Sbjct: 61 DNPLFNNSTPASNLSDK 77

[Close]

BLAST of Cla016154 vs. TrEMBL
Match: E5GCM2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.8e-08
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 1


Query: 1  MTSKKVASQAPAASDIYIGTITRDRLKRVVQEKEQGSVIMENVWRWLTESPKGGIVIKEN 60
          M   KVAS+A   +D Y   I +   KR  Q++EQ SV+ +  W  L ESPK GI+IKEN
Sbjct: 1  MALMKVASKAIIINDTYTRLIVQSHSKRSTQKQEQNSVLAKKSWEQLMESPKCGIIIKEN 60

Query: 61 PVSDNPAPASDHSRKNHTLIV 82
          P+ ++  PAS+ S K   L V
Sbjct: 61 PLFEDSTPASNLSEKESHLEV 81

[Close]

BLAST of Cla016154 vs. NCBI nr
Match: gi|659113191|ref|XP_008456446.1| (PREDICTED: uncharacterized protein LOC103496389 [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 1.7e-11
Identity = 39/75 (52.00%), Postives = 53/75 (70.67%), Query Frame = 1


Query: 1  MTSKKVASQAPAASDIYIGTITRDRLKRVVQEKEQGSVIMENVWRWLTESPKGGIVIKEN 60
          M SKKVAS +  ASD Y G ITR R K ++QE++Q S +++++ + L ESPK GIVIK+N
Sbjct: 1  MASKKVASNSYVASDAYTGPITRSRSKGIIQEQDQDSNVVQSILKQLMESPKAGIVIKKN 60

Query: 61 PVSDNPAPASDHSRK 76
          P+ DN   AS  S+K
Sbjct: 61 PLYDNSDLASSMSKK 75

[Close]

BLAST of Cla016154 vs. NCBI nr
Match: gi|307136319|gb|ADN34142.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 76.6 bits (187), Expect = 2.3e-11
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 1


Query: 1  MTSKKVASQAPAASDIYIGTITRDRLKRVVQEKEQGSVIMENVWRWLTESPKGGIVIKEN 60
          M  +KVAS+A   +D Y G +T+   KR +QE+EQ SV+ +  W  L ESPKGGI I+EN
Sbjct: 1  MAPRKVASKATVTNDSYTGLVTQSHSKRSIQEQEQSSVLKKKSWEQLIESPKGGINIREN 60

Query: 61 PVSDNPAPASDHSRKNHTLIV 82
          P+ +N  PAS+ S K   L V
Sbjct: 61 PLFNNSTPASNLSDKESHLEV 81

[Close]

BLAST of Cla016154 vs. NCBI nr
Match: gi|307136441|gb|ADN34247.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-09
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 1


Query: 1  MTSKKVASQAPAASDIYIGTITRDRLKRVVQEKEQ--GSVIMENVWRWLTESPKGGIVIK 60
          M + K AS++  ASD YIG +T+  LKR +QE+EQ  G V+ +     L ESPKGGI+I+
Sbjct: 1  MATNKAASKSSVASDSYIGLVTQSHLKRSMQEQEQEQGFVLKKKSLEQLIESPKGGIIIR 60

Query: 61 ENPVSDNPAPASDHSRK 76
          +NP+ +N  PAS+ S K
Sbjct: 61 DNPLFNNSTPASNLSDK 77

[Close]

BLAST of Cla016154 vs. NCBI nr
Match: gi|307136413|gb|ADN34221.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 65.9 bits (159), Expect = 4.0e-08
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 1


Query: 1  MTSKKVASQAPAASDIYIGTITRDRLKRVVQEKEQGSVIMENVWRWLTESPKGGIVIKEN 60
          M   KVAS+A   +D Y   I +   KR  Q++EQ SV+ +  W  L ESPK GI+IKEN
Sbjct: 1  MALMKVASKAIIINDTYTRLIVQSHSKRSTQKQEQNSVLAKKSWEQLMESPKCGIIIKEN 60

Query: 61 PVSDNPAPASDHSRKNHTLIV 82
          P+ ++  PAS+ S K   L V
Sbjct: 61 PLFEDSTPASNLSEKESHLEV 81

The following BLAST results are available for this feature:

BLAST of Cla016154 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCE3_CUCME	1.6e-11	48.15	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCP6_CUCME	1.1e-09	48.05	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCM2_CUCME	2.8e-08	44.44	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of Cla016154 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659113191\|ref\|XP_008456446.1\|	1.7e-11	52.00	PREDICTED: uncharacterized protein LOC103496389 [Cucumis melo]	[more]
gi\|307136319\|gb\|ADN34142.1\|	2.3e-11	48.15	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|307136441\|gb\|ADN34247.1\|	1.6e-09	48.05	ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|307136413\|gb\|ADN34221.1\|	4.0e-08	44.44	hypothetical protein [Cucumis melo subsp. melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla016154	Cla016154.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla016154	Cucurbita maxima (Rimu)	cmawmB290
Cla016154	Cucurbita maxima (Rimu)	cmawmB476
Cla016154	Cucurbita maxima (Rimu)	cmawmB547
Cla016154	Cucurbita moschata (Rifu)	cmowmB283
Cla016154	Cucurbita moschata (Rifu)	cmowmB469
Cla016154	Cucurbita moschata (Rifu)	cmowmB537
Cla016154	Wild cucumber (PI 183967)	cpiwmB183
Cla016154	Wild cucumber (PI 183967)	cpiwmB184
Cla016154	Melon (DHL92) v3.5.1	mewmB342
Cla016154	Melon (DHL92) v3.5.1	mewmB444
Cla016154	Cucumber (Chinese Long) v2	cuwmB187
Cla016154	Watermelon (Charleston Gray)	wcgwmB007
Cla016154	Watermelon (Charleston Gray)	wcgwmB045
Cla016154	Cucumber (Chinese Long) v2	cuwmB180
Cla016154	Cucumber (Chinese Long) v2	cuwmB181
Cla016154	Cucurbita pepo (Zucchini)	cpewmB200
Cla016154	Cucurbita pepo (Zucchini)	cpewmB240
Cla016154	Cucurbita pepo (Zucchini)	cpewmB684
Cla016154	Bottle gourd (USVL1VR-Ls)	lsiwmB347
Cla016154	Bottle gourd (USVL1VR-Ls)	lsiwmB424
Cla016154	Cucumber (Gy14) v2	cgybwmB176
Cla016154	Cucumber (Gy14) v2	cgybwmB170
Cla016154	Cucumber (Gy14) v2	cgybwmB171
Cla016154	Melon (DHL92) v3.6.1	medwmB340
Cla016154	Melon (DHL92) v3.6.1	medwmB430
Cla016154	Melon (DHL92) v3.6.1	medwmB431
Cla016154	Silver-seed gourd	carwmB0088
Cla016154	Silver-seed gourd	carwmB0560
Cla016154	Silver-seed gourd	carwmB0702
Cla016154	Silver-seed gourd	carwmB0776
Cla016154	Cucumber (Chinese Long) v3	cucwmB002
Cla016154	Cucumber (Chinese Long) v3	cucwmB192
Cla016154	Cucumber (Chinese Long) v3	cucwmB193
Cla016154	Cucumber (Chinese Long) v3	cucwmB199
Cla016154	Watermelon (97103) v2	wmwmbB009
Cla016154	Watermelon (97103) v2	wmwmbB041
Cla016154	Wax gourd	wgowmB004
Cla016154	Wax gourd	wgowmB168
Cla016154	Wax gourd	wgowmB577
Cla016154	Watermelon (97103) v1	wmwmB007
Cla016154	Watermelon (97103) v1	wmwmB020
Cla016154	Cucumber (Gy14) v1	cgywmB561
Cla016154	Cucumber (Gy14) v1	cgywmB582