Cla016133 (gene) Watermelon (97103) v1

Overview
NameCla016133
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr9 : 13432614 .. 13432988 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGAGGACTTTCCAACTACCCCCAGCGGTAGAGGGTCTGATAGCTTGCCATCAAGGAGTAGAAGGTCCCGAATTTCATCGATTGGAGAGTACAGCCAGGTGGTTCGTGAGGGATTCCAACTTCTGACGAAGTCCATTGACGGCATTGCGCAATGGCCTGTCATGAACGAGGACCTGGCAAGGCGTCGTCGTCGAGAACTATACACCGAGCTGCAATCCATTCCTGGTCTGTTGGTACAGGATGGCTTGATTGTTGCACGGTCATTGCTTGCAGATCCAATGCTGTTAAACCACTTTGTGGACTTCCCACCGCAATGGAAGTACGACTATTGCATGCAAGTCCTCGGGCGACCACGGGATCCAGCACCATGA

mRNA sequence

ATGTCAGAGGACTTTCCAACTACCCCCAGCGGTAGAGGGTCTGATAGCTTGCCATCAAGGAGTAGAAGGTCCCGAATTTCATCGATTGGAGAGTACAGCCAGGTGGTTCGTGAGGGATTCCAACTTCTGACGAAGTCCATTGACGGCATTGCGCAATGGCCTGTCATGAACGAGGACCTGGCAAGGCGTCGTCGTCGAGAACTATACACCGAGCTGCAATCCATTCCTGGTCTGTTGGTACAGGATGGCTTGATTGTTGCACGGTCATTGCTTGCAGATCCAATGCTGTTAAACCACTTTGTGGACTTCCCACCGCAATGGAAGTACGACTATTGCATGCAAGTCCTCGGGCGACCACGGGATCCAGCACCATGA

Coding sequence (CDS)

ATGTCAGAGGACTTTCCAACTACCCCCAGCGGTAGAGGGTCTGATAGCTTGCCATCAAGGAGTAGAAGGTCCCGAATTTCATCGATTGGAGAGTACAGCCAGGTGGTTCGTGAGGGATTCCAACTTCTGACGAAGTCCATTGACGGCATTGCGCAATGGCCTGTCATGAACGAGGACCTGGCAAGGCGTCGTCGTCGAGAACTATACACCGAGCTGCAATCCATTCCTGGTCTGTTGGTACAGGATGGCTTGATTGTTGCACGGTCATTGCTTGCAGATCCAATGCTGTTAAACCACTTTGTGGACTTCCCACCGCAATGGAAGTACGACTATTGCATGCAAGTCCTCGGGCGACCACGGGATCCAGCACCATGA

Protein sequence

MSEDFPTTPSGRGSDSLPSRSRRSRISSIGEYSQVVREGFQLLTKSIDGIAQWPVMNEDLARRRRRELYTELQSIPGLLVQDGLIVARSLLADPMLLNHFVDFPPQWKYDYCMQVLGRPRDPAP
Homology
[Close]
BLAST of Cla016133 vs. NCBI nr
Match: gi|659071532|ref|XP_008460440.1| (PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo])

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-07
Identity = 36/102 (35.29%), Postives = 53/102 (51.96%), Query Frame = 1 

Query: 3   EDFPTTPSGRGSDSLPSRSRRSRISSIGEYSQVVREGFQLLTKSIDGIAQWPVMNEDLAR 62
           ED  +TP+    D   S+  + R S   +     R   +  +K I  IA W     ++  
Sbjct: 102 EDMSSTPTSMAHDVGSSKPSKKRRSYSEDLMDTFRASMRETSKEIRKIAAWQREKMEIES 161

Query: 63  RRRRELYTELQSIPGLLVQDGLIVARSLLADPMLLNHFVDFP 105
              + LY ELQ+IPG+ V D LIV  SLL DP++L+ F+D+P
Sbjct: 162 SIHKRLYAELQTIPGMDVDDCLIVVESLLPDPIMLHTFLDYP 203

The following BLAST results are available for this feature:
BLAST of Cla016133 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659071532|ref|XP_008460440.1|1.3e-0735.29PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla016133Cla016133.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla016133Cucurbita maxima (Rimu)cmawmB290
Cla016133Cucurbita maxima (Rimu)cmawmB472
Cla016133Cucurbita maxima (Rimu)cmawmB547
Cla016133Cucurbita maxima (Rimu)cmawmB779
Cla016133Cucurbita moschata (Rifu)cmowmB283
Cla016133Cucurbita moschata (Rifu)cmowmB465
Cla016133Cucurbita moschata (Rifu)cmowmB477
Cla016133Cucurbita moschata (Rifu)cmowmB537
Cla016133Cucurbita moschata (Rifu)cmowmB773
Cla016133Wild cucumber (PI 183967)cpiwmB183
Cla016133Wild cucumber (PI 183967)cpiwmB184
Cla016133Melon (DHL92) v3.5.1mewmB342
Cla016133Melon (DHL92) v3.5.1mewmB444
Cla016133Cucumber (Chinese Long) v2cuwmB187
Cla016133Watermelon (Charleston Gray)wcgwmB007
Cla016133Watermelon (Charleston Gray)wcgwmB045
Cla016133Cucumber (Chinese Long) v2cuwmB180
Cla016133Cucumber (Chinese Long) v2cuwmB181
Cla016133Cucurbita pepo (Zucchini)cpewmB019
Cla016133Cucurbita pepo (Zucchini)cpewmB200
Cla016133Cucurbita pepo (Zucchini)cpewmB684
Cla016133Bottle gourd (USVL1VR-Ls)lsiwmB347
Cla016133Bottle gourd (USVL1VR-Ls)lsiwmB424
Cla016133Cucumber (Gy14) v2cgybwmB176
Cla016133Cucumber (Gy14) v2cgybwmB170
Cla016133Cucumber (Gy14) v2cgybwmB171
Cla016133Melon (DHL92) v3.6.1medwmB340
Cla016133Melon (DHL92) v3.6.1medwmB430
Cla016133Melon (DHL92) v3.6.1medwmB431
Cla016133Silver-seed gourdcarwmB0560
Cla016133Silver-seed gourdcarwmB0702
Cla016133Silver-seed gourdcarwmB0776
Cla016133Cucumber (Chinese Long) v3cucwmB192
Cla016133Cucumber (Chinese Long) v3cucwmB193
Cla016133Cucumber (Chinese Long) v3cucwmB199
Cla016133Watermelon (97103) v2wmwmbB009
Cla016133Watermelon (97103) v2wmwmbB041
Cla016133Wax gourdwgowmB004
Cla016133Wax gourdwgowmB168
Cla016133Wax gourdwgowmB242
Cla016133Wax gourdwgowmB252
Cla016133Watermelon (97103) v1wmwmB007
Cla016133Watermelon (97103) v1wmwmB020
Cla016133Cucumber (Gy14) v1cgywmB561
Cla016133Cucumber (Gy14) v1cgywmB582