Cla016121 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla016121
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	High mobility group family (Fragment) (AHRD V1 **-- B9GFX2_POPTR); contains Interpro domain(s) IPR001606 AT-rich interaction region
Location	Chr9 : 13853534 .. 13854502 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATGGGAGCAGGTTCTGAAGTTTGCCAACTTACGCAAGAGATATATCTCTTTGTATGCTTCGTTGCTTAAATCTGATCCTACACGTGCAATTGTTAATGATGACAAACATATTGAGGAACTTGATCGTGAACTTGATATTGAGCTCATTCTTCAATGGAGGTACACTTTTACAAATTTATCATTAATTGTGATACAGGGCCATAATGTGTTGTTTTGGAACGTTGCACTCTTTTCCATCATTGTGCTGGTTGAGATTCACGTTTTATGTATTATTTTGGGGATGCTTATTTTTCCTATTTCGTTGTTCTATTGGTTCTCTTTTTCTTGTCTTCTTCGTGAAATTATGTACTTTGAGCTATGTCTCTTTCTTTTCTTCTTTTTCTTTTTTAAAAAAAACAATTAAAAATTGTCACTGCCAGCTAGGACCAAAAGCTGGAACGGCGGCCTTGATAAACACTATCCTCCGCCACCCACCACCCACAATGAAGTTATTTCCGACCCCATTGTTTTTTGGGACACGTTGAGGCATTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAGCTAGACTTGCATGTTTTATATTCAGAAGTCACAAGAAGAGGACATGTAAAGGTTGTTGCAGAGAAGAAATGGAGAGAAGTTGGAAGTGTGTTTAAGTTTTCTCCTACAACAACGAGTGCTTCATTTGTATTGAGAAAACATTATCTAAGTCTTCTTTACCATTACGAGCAAGTTTACTTGTTTGGCCGGCAGGGCCCCGTCTTTGTCCTTCAAGTGCCATTTTCTTTTGGTAGCCCTACCAGTGAAAACAAATTGGCTCTTGTGGAATATACCCCCAAAACTACGTTGTGTTCGCCTGGTCCGCCTGCTGAAGTTACTGGAACAATTGATGGGAAATTCTACTGGGGTTACCTGGTGAGAAATTGGGGTTTGAGGTTCTAA

mRNA sequence

ATGACATGGGAGCAGGTTCTGAAGTTTGCCAACTTACGCAAGAGATATATCTCTTTGTATGCTTCGTTGCTTAAATCTGATCCTACACGTGCAATTGTTAATGATGACAAACATATTGAGGAACTTGATCGTGAACTTGATATTGAGCTCATTCTTCAATGGAGGACCAAAAGCTGGAACGGCGGCCTTGATAAACACTATCCTCCGCCACCCACCACCCACAATGAAGTTATTTCCGACCCCATTGTTTTTTGGGACACGTTGAGGCATTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAGCTAGACTTGCATGTTTTATATTCAGAAGTCACAAGAAGAGGACATGTAAAGGTTGTTGCAGAGAAGAAATGGAGAGAAGTTGGAAGTGTGTTTAAGTTTTCTCCTACAACAACGAGTGCTTCATTTGTATTGAGAAAACATTATCTAAGTCTTCTTTACCATTACGAGCAAGTTTACTTGTTTGGCCGGCAGGGCCCCGTCTTTGTCCTTCAAGTGCCATTTTCTTTTGGTAGCCCTACCAGTGAAAACAAATTGGCTCTTGTGGAATATACCCCCAAAACTACGTTGTGTTCGCCTGGTCCGCCTGCTGAAGTTACTGGAACAATTGATGGGAAATTCTACTGGGGTTACCTGGTGAGAAATTGGGGTTTGAGGTTCTAA

Coding sequence (CDS)

ATGACATGGGAGCAGGTTCTGAAGTTTGCCAACTTACGCAAGAGATATATCTCTTTGTATGCTTCGTTGCTTAAATCTGATCCTACACGTGCAATTGTTAATGATGACAAACATATTGAGGAACTTGATCGTGAACTTGATATTGAGCTCATTCTTCAATGGAGGACCAAAAGCTGGAACGGCGGCCTTGATAAACACTATCCTCCGCCACCCACCACCCACAATGAAGTTATTTCCGACCCCATTGTTTTTTGGGACACGTTGAGGCATTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAGCTAGACTTGCATGTTTTATATTCAGAAGTCACAAGAAGAGGACATGTAAAGGTTGTTGCAGAGAAGAAATGGAGAGAAGTTGGAAGTGTGTTTAAGTTTTCTCCTACAACAACGAGTGCTTCATTTGTATTGAGAAAACATTATCTAAGTCTTCTTTACCATTACGAGCAAGTTTACTTGTTTGGCCGGCAGGGCCCCGTCTTTGTCCTTCAAGTGCCATTTTCTTTTGGTAGCCCTACCAGTGAAAACAAATTGGCTCTTGTGGAATATACCCCCAAAACTACGTTGTGTTCGCCTGGTCCGCCTGCTGAAGTTACTGGAACAATTGATGGGAAATTCTACTGGGGTTACCTGGTGAGAAATTGGGGTTTGAGGTTCTAA

Protein sequence

MTWEQVLKFANLRKRYISLYASLLKSDPTRAIVNDDKHIEELDRELDIELILQWRTKSWNGGLDKHYPPPPTTHNEVISDPIVFWDTLRHFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGHVKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPVFVLQVPFSFGSPTSENKLALVEYTPKTTLCSPGPPAEVTGTIDGKFYWGYLVRNWGLRF

Homology

[Close]

BLAST of Cla016121 vs. Swiss-Prot
Match: HMGB9_ARATH (High mobility group B protein 9 OS=Arabidopsis thaliana GN=HMGB9 PE=2 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 2.2e-48
Identity = 103/172 (59.88%), Postives = 122/172 (70.93%), Query Frame = 1


Query: 65  KHYPPPPTTHNEVISDPIVFWDTLRHFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRG-H 124
           K YP P   H  V+ D  VFWDTLR FH +M+TKFMIPVIGGKELDLHVLY EVTRRG +
Sbjct: 25  KEYPEPLALHEVVVKDSSVFWDTLRRFHSIMSTKFMIPVIGGKELDLHVLYVEVTRRGGY 84

Query: 125 VKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPVFVLQVPFS 184
            KVV EKKWREVG VF+FS TTTSASFVLRKHYL+LL+HYEQV+LF  +GP+      F 
Sbjct: 85  EKVVVEKKWREVGGVFRFSATTTSASFVLRKHYLNLLFHYEQVHLFTARGPLLHPIATF- 144

Query: 185 FGSPTSENKLALVEYTPKT-TLCSPGPPAE------VTGTIDGKFYWGYLVR 229
             +P++  ++ALVEYTP +    +  PP++        GTI+GKF  GYLV+
Sbjct: 145 HANPSTSKEMALVEYTPPSIRYHNTHPPSQGSSSFTAIGTIEGKFDCGYLVK 195

[Close]

BLAST of Cla016121 vs. Swiss-Prot
Match: HMG15_ARATH (High mobility group B protein 15 OS=Arabidopsis thaliana GN=HMGB15 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.9e-29
Identity = 71/172 (41.28%), Postives = 102/172 (59.30%), Query Frame = 1


Query: 70  PPTTHNEVISDPIVFWDTLRHFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGHV-KVVA 129
           P  T+  V++DP +F  +L   H ++ TKFM+P+IGG++LDLH L+ EVT RG + K++ 
Sbjct: 21  PEATYEAVVADPRLFMTSLERLHSLLGTKFMVPIIGGRDLDLHKLFVEVTSRGGINKILN 80

Query: 130 EKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQG--PVFVLQVP----- 189
           E++W+EV + F F PT T+AS+VLRK+Y SLL +YEQ+Y F   G  P   +Q P     
Sbjct: 81  ERRWKEVTATFVFPPTATNASYVLRKYYFSLLNNYEQIYFFRSNGQIPPDSMQSPSARPC 140

Query: 190 FSFGSPTSENKLALVEYTPKTTLCSPG------PPAEVTGTIDGKFYWGYLV 228
           F  G+     +L  + +TP+  + +          + V G IDGKF  GYLV
Sbjct: 141 FIQGAIRPSQELQALTFTPQPKINTAEFLGGSLAGSNVVGVIDGKFESGYLV 192

[Close]

BLAST of Cla016121 vs. Swiss-Prot
Match: HMG11_ARATH (Putative high mobility group B protein 11 OS=Arabidopsis thaliana GN=HMGB11 PE=3 SV=2)

HSP 1 Score: 108.6 bits (270), Expect = 9.3e-23
Identity = 60/157 (38.22%), Postives = 88/157 (56.05%), Query Frame = 1


Query: 74  HNEVISDPIVFWDTLRHFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGHV-KVVAEKKW 133
           + +++ +P +FW+ LR FH   + KF IP++GGK LDLH L++EVT RG + KV+ +++ 
Sbjct: 30  YQDIVRNPELFWEMLRDFHESSDKKFKIPIVGGKSLDLHRLFNEVTSRGGLEKVIKDRRC 89

Query: 134 REVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPVFVLQVPFSFGSPTSENK 193
           +EV   F F  T T+++FVLRK YL +L+ +E +Y F         Q P S      +  
Sbjct: 90  KEVIDAFNFKTTITNSAFVLRKSYLKMLFEFEHLYYF---------QAPLSTFWEKEKAL 149

Query: 194 LALVEYTPKTTLCSP--GPPAEVTGTIDGKFYWGYLV 228
             L+E +      S    P   +TG IDGKF  GYL+
Sbjct: 150 KLLIEKSANRDKDSQELKPGTVITGIIDGKFESGYLI 177

[Close]

BLAST of Cla016121 vs. Swiss-Prot
Match: HMG10_ARATH (High mobility group B protein 10 OS=Arabidopsis thaliana GN=HMGB10 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.5e-22
Identity = 63/158 (39.87%), Postives = 86/158 (54.43%), Query Frame = 1


Query: 71  PTTHNEVISDPIVFWDTLRHFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGHV-KVVAE 130
           P  +++++ +  +FW+ LR F  + +    +P +GG  LDLH L+ EVT RG + +VV +
Sbjct: 33  PAKYDDLVRNSALFWEKLRAFLGLTSKTLKVPTVGGNTLDLHRLFIEVTSRGGIERVVKD 92

Query: 131 KKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPVFVLQVPFSFGSPTS 190
           +KW+EV   F F  T TSASFVLRK+YL  L+  E VY    + PV  LQ      +  +
Sbjct: 93  RKWKEVIGAFSFPTTITSASFVLRKYYLKFLFQLEHVYYL--EKPVSSLQ-----STDEA 152

Query: 191 ENKLALVEYTPKTTLCSPGPPAEVTGTIDGKFYWGYLV 228
              LA     P+  +  P    EV G IDGKF  GYLV
Sbjct: 153 LKSLANESPNPEEGIDEPQVGYEVQGFIDGKFDSGYLV 183

[Close]

BLAST of Cla016121 vs. Swiss-Prot
Match: ARID2_HUMAN (AT-rich interactive domain-containing protein 2 OS=Homo sapiens GN=ARID2 PE=1 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-12
Identity = 40/91 (43.96%), Postives = 54/91 (59.34%), Query Frame = 1


Query: 82  IVFWDTLRHFHFMMNTKFM-IPVIGGKELDLHVLYSEVTRRGHVKVVAEK-KWREVGSVF 141
           + F D LR FH    + F  IP +GGKELDLH LY+ VT  G    V+EK +W E+   F
Sbjct: 17  LAFLDELRQFHHSRGSPFKKIPAVGGKELDLHGLYTRVTTLGGFAKVSEKNQWGEIVEEF 76

Query: 142 KFSPTTTSASFVLRKHYLSLLYHYEQVYLFG 171
            F  + ++A+F L+++YL  L  YE+V+ FG
Sbjct: 77  NFPRSCSNAAFALKQYYLRYLEKYEKVHHFG 107

[Close]

BLAST of Cla016121 vs. TrEMBL
Match: E5GCD0_CUCME (High mobility group family OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 2.7e-85
Identity = 157/174 (90.23%), Postives = 162/174 (93.10%), Query Frame = 1


Query: 55  RTKSWNGGLDKHYPPPPTTHNEVISDPIVFWDTLRHFHFMMNTKFMIPVIGGKELDLHVL 114
           RTK+WNGGLDKHYPPP  TH+EVISDPIVFWDTLR FHFMMNTKFMIPVIGGKELDLHVL
Sbjct: 6   RTKTWNGGLDKHYPPPLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVL 65

Query: 115 YSEVTRRG-HVKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQG 174
           YSEVTRRG H KVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQG
Sbjct: 66  YSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQG 125

Query: 175 PVFVLQVPFSFGSPTSENKLALVEYTPKTTLCSPGPPAEVTGTIDGKFYWGYLV 228
           P+ V Q PFSFGSPTSEN+LALVEYTPKTT  SPGPP+EVTGTIDGKF  GYLV
Sbjct: 126 PICVPQAPFSFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLV 179

[Close]

BLAST of Cla016121 vs. TrEMBL
Match: A0A0A0L181_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652850 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 8.6e-84
Identity = 155/174 (89.08%), Postives = 160/174 (91.95%), Query Frame = 1


Query: 55  RTKSWNGGLDKHYPPPPTTHNEVISDPIVFWDTLRHFHFMMNTKFMIPVIGGKELDLHVL 114
           RTK+WNGGLDKHYPP   TH+EVISDPIVFWDTLR FHFMMNTKFMIPVIGGKELDLHVL
Sbjct: 6   RTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVL 65

Query: 115 YSEVTRRG-HVKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQG 174
           YSEVTRRG H KVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQG
Sbjct: 66  YSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQG 125

Query: 175 PVFVLQVPFSFGSPTSENKLALVEYTPKTTLCSPGPPAEVTGTIDGKFYWGYLV 228
           P+ V Q PF FGSPTSEN+LALVEYTPKTT  SPGPP+EVTGTIDGKF  GYLV
Sbjct: 126 PICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLV 179

[Close]

BLAST of Cla016121 vs. TrEMBL
Match: A0A061FL25_THECC (High mobility group family isoform 2 OS=Theobroma cacao GN=TCM_034318 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 6.9e-57
Identity = 116/175 (66.29%), Postives = 131/175 (74.86%), Query Frame = 1


Query: 55  RTKSWNGGLDK-HYPPPPTTHNEVISDPIVFWDTLRHFHFMMNTKFMIPVIGGKELDLHV 114
           +TK  NG ++K  YP P   H EV+ DPIVFWDTLR FHF+M TKFMIPVIGGKELDLHV
Sbjct: 13  KTKGRNGAVEKKEYPDPLAYHEEVVQDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHV 72

Query: 115 LYSEVTRRG-HVKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQ 174
           LY E T+RG + KVVAEKKWREVGSVF+FSPTTTSASFVLRKHY SLLYHYEQV+ F  +
Sbjct: 73  LYVEATKRGGYEKVVAEKKWREVGSVFRFSPTTTSASFVLRKHYFSLLYHYEQVHFFKMK 132

Query: 175 GPVFVLQVPFSFGSPTSENKLALVEYTPKTTLCSPGPPAEVTGTIDGKFYWGYLV 228
           GP+    V F    P+   +LALVEY+PK     P P  EV GTIDGKF  GYL+
Sbjct: 133 GPLHTPAVAFPVNDPSCRPELALVEYSPKPIREFPDPLIEVFGTIDGKFDCGYLI 187

[Close]

BLAST of Cla016121 vs. TrEMBL
Match: A0A061FE61_THECC (High mobility group family isoform 1 OS=Theobroma cacao GN=TCM_034318 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 6.4e-55
Identity = 116/181 (64.09%), Postives = 131/181 (72.38%), Query Frame = 1


Query: 55  RTKSWNGGLDK-HYPPPPTTHNEVISDPIVFWDTLRHFHFMMNTKFMIPVIGGKELDLHV 114
           +TK  NG ++K  YP P   H EV+ DPIVFWDTLR FHF+M TKFMIPVIGGKELDLHV
Sbjct: 13  KTKGRNGAVEKKEYPDPLAYHEEVVQDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHV 72

Query: 115 LYSEVTRRG-HVKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQ 174
           LY E T+RG + KVVAEKKWREVGSVF+FSPTTTSASFVLRKHY SLLYHYEQV+ F  +
Sbjct: 73  LYVEATKRGGYEKVVAEKKWREVGSVFRFSPTTTSASFVLRKHYFSLLYHYEQVHFFKMK 132

Query: 175 GPVFVLQVPFSFGSPTSENKLALVEYTPKTTLCSPGPPAE------VTGTIDGKFYWGYL 228
           GP+    V F    P+   +LALVEY+PK     P P  E      V GTIDGKF  GYL
Sbjct: 133 GPLHTPAVAFPVNDPSCRPELALVEYSPKPIREFPDPLIEGTSCFSVFGTIDGKFDCGYL 192

[Close]

BLAST of Cla016121 vs. TrEMBL
Match: A0A0B0NYJ2_GOSAR (High mobility group B 9-like protein OS=Gossypium arboreum GN=F383_02064 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 4.2e-54
Identity = 115/181 (63.54%), Postives = 133/181 (73.48%), Query Frame = 1


Query: 55  RTKSWNGGLDK-HYPPPPTTHNEVISDPIVFWDTLRHFHFMMNTKFMIPVIGGKELDLHV 114
           + K  NG ++K  YP   T+H EV+ DPIVFWDTLR FHF+M TKFMIPVIGGKELDLHV
Sbjct: 13  KAKGRNGVVEKKEYPDSLTSHEEVVKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHV 72

Query: 115 LYSEVTRRG-HVKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQ 174
           LY E T+RG + KVV+EKKWREVGSVFKFSPTTTSASFVLRKHY SLLYHYEQV+ F  +
Sbjct: 73  LYVEATKRGGYEKVVSEKKWREVGSVFKFSPTTTSASFVLRKHYFSLLYHYEQVHFFKMK 132

Query: 175 GPVFVLQVPFSFGSPTSENKLALVEYTPKTTLCSPGPPAE------VTGTIDGKFYWGYL 228
           GP+    V      P+   +LALVEY+P+ T  SP P  E      VTGTI+GKF  GYL
Sbjct: 133 GPLNTPTVASPVNDPSCRPELALVEYSPQPTRESPDPLIEGTSCFSVTGTIEGKFDCGYL 192

[Close]

BLAST of Cla016121 vs. NCBI nr
Match: gi|659104349|ref|XP_008452910.1| (PREDICTED: high mobility group B protein 9 [Cucumis melo])

HSP 1 Score: 323.2 bits (827), Expect = 3.8e-85
Identity = 157/174 (90.23%), Postives = 162/174 (93.10%), Query Frame = 1


Query: 55  RTKSWNGGLDKHYPPPPTTHNEVISDPIVFWDTLRHFHFMMNTKFMIPVIGGKELDLHVL 114
           RTK+WNGGLDKHYPPP  TH+EVISDPIVFWDTLR FHFMMNTKFMIPVIGGKELDLHVL
Sbjct: 6   RTKTWNGGLDKHYPPPLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVL 65

Query: 115 YSEVTRRG-HVKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQG 174
           YSEVTRRG H KVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQG
Sbjct: 66  YSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQG 125

Query: 175 PVFVLQVPFSFGSPTSENKLALVEYTPKTTLCSPGPPAEVTGTIDGKFYWGYLV 228
           P+ V Q PFSFGSPTSEN+LALVEYTPKTT  SPGPP+EVTGTIDGKF  GYLV
Sbjct: 126 PICVPQAPFSFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLV 179

[Close]

BLAST of Cla016121 vs. NCBI nr
Match: gi|449455571|ref|XP_004145526.1| (PREDICTED: high mobility group B protein 9 [Cucumis sativus])

HSP 1 Score: 318.2 bits (814), Expect = 1.2e-83
Identity = 155/174 (89.08%), Postives = 160/174 (91.95%), Query Frame = 1


Query: 55  RTKSWNGGLDKHYPPPPTTHNEVISDPIVFWDTLRHFHFMMNTKFMIPVIGGKELDLHVL 114
           RTK+WNGGLDKHYPP   TH+EVISDPIVFWDTLR FHFMMNTKFMIPVIGGKELDLHVL
Sbjct: 6   RTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVL 65

Query: 115 YSEVTRRG-HVKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQG 174
           YSEVTRRG H KVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQG
Sbjct: 66  YSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQG 125

Query: 175 PVFVLQVPFSFGSPTSENKLALVEYTPKTTLCSPGPPAEVTGTIDGKFYWGYLV 228
           P+ V Q PF FGSPTSEN+LALVEYTPKTT  SPGPP+EVTGTIDGKF  GYLV
Sbjct: 126 PICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLV 179

[Close]

BLAST of Cla016121 vs. NCBI nr
Match: gi|590594732|ref|XP_007017934.1| (High mobility group family isoform 2 [Theobroma cacao])

HSP 1 Score: 228.8 bits (582), Expect = 9.8e-57
Identity = 116/175 (66.29%), Postives = 131/175 (74.86%), Query Frame = 1


Query: 55  RTKSWNGGLDK-HYPPPPTTHNEVISDPIVFWDTLRHFHFMMNTKFMIPVIGGKELDLHV 114
           +TK  NG ++K  YP P   H EV+ DPIVFWDTLR FHF+M TKFMIPVIGGKELDLHV
Sbjct: 13  KTKGRNGAVEKKEYPDPLAYHEEVVQDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHV 72

Query: 115 LYSEVTRRG-HVKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQ 174
           LY E T+RG + KVVAEKKWREVGSVF+FSPTTTSASFVLRKHY SLLYHYEQV+ F  +
Sbjct: 73  LYVEATKRGGYEKVVAEKKWREVGSVFRFSPTTTSASFVLRKHYFSLLYHYEQVHFFKMK 132

Query: 175 GPVFVLQVPFSFGSPTSENKLALVEYTPKTTLCSPGPPAEVTGTIDGKFYWGYLV 228
           GP+    V F    P+   +LALVEY+PK     P P  EV GTIDGKF  GYL+
Sbjct: 133 GPLHTPAVAFPVNDPSCRPELALVEYSPKPIREFPDPLIEVFGTIDGKFDCGYLI 187

[Close]

BLAST of Cla016121 vs. NCBI nr
Match: gi|590594728|ref|XP_007017933.1| (High mobility group family isoform 1 [Theobroma cacao])

HSP 1 Score: 222.2 bits (565), Expect = 9.2e-55
Identity = 116/181 (64.09%), Postives = 131/181 (72.38%), Query Frame = 1


Query: 55  RTKSWNGGLDK-HYPPPPTTHNEVISDPIVFWDTLRHFHFMMNTKFMIPVIGGKELDLHV 114
           +TK  NG ++K  YP P   H EV+ DPIVFWDTLR FHF+M TKFMIPVIGGKELDLHV
Sbjct: 13  KTKGRNGAVEKKEYPDPLAYHEEVVQDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHV 72

Query: 115 LYSEVTRRG-HVKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQ 174
           LY E T+RG + KVVAEKKWREVGSVF+FSPTTTSASFVLRKHY SLLYHYEQV+ F  +
Sbjct: 73  LYVEATKRGGYEKVVAEKKWREVGSVFRFSPTTTSASFVLRKHYFSLLYHYEQVHFFKMK 132

Query: 175 GPVFVLQVPFSFGSPTSENKLALVEYTPKTTLCSPGPPAE------VTGTIDGKFYWGYL 228
           GP+    V F    P+   +LALVEY+PK     P P  E      V GTIDGKF  GYL
Sbjct: 133 GPLHTPAVAFPVNDPSCRPELALVEYSPKPIREFPDPLIEGTSCFSVFGTIDGKFDCGYL 192

[Close]

BLAST of Cla016121 vs. NCBI nr
Match: gi|728836723|gb|KHG16166.1| (High mobility group B 9 -like protein [Gossypium arboreum])

HSP 1 Score: 219.5 bits (558), Expect = 6.0e-54
Identity = 115/181 (63.54%), Postives = 133/181 (73.48%), Query Frame = 1


Query: 55  RTKSWNGGLDK-HYPPPPTTHNEVISDPIVFWDTLRHFHFMMNTKFMIPVIGGKELDLHV 114
           + K  NG ++K  YP   T+H EV+ DPIVFWDTLR FHF+M TKFMIPVIGGKELDLHV
Sbjct: 13  KAKGRNGVVEKKEYPDSLTSHEEVVKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHV 72

Query: 115 LYSEVTRRG-HVKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQ 174
           LY E T+RG + KVV+EKKWREVGSVFKFSPTTTSASFVLRKHY SLLYHYEQV+ F  +
Sbjct: 73  LYVEATKRGGYEKVVSEKKWREVGSVFKFSPTTTSASFVLRKHYFSLLYHYEQVHFFKMK 132

Query: 175 GPVFVLQVPFSFGSPTSENKLALVEYTPKTTLCSPGPPAE------VTGTIDGKFYWGYL 228
           GP+    V      P+   +LALVEY+P+ T  SP P  E      VTGTI+GKF  GYL
Sbjct: 133 GPLNTPTVASPVNDPSCRPELALVEYSPQPTRESPDPLIEGTSCFSVTGTIEGKFDCGYL 192

The following BLAST results are available for this feature:

BLAST of Cla016121 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HMGB9_ARATH	2.2e-48	59.88	High mobility group B protein 9 OS=Arabidopsis thaliana GN=HMGB9 PE=2 SV=1	[more]
HMG15_ARATH	3.9e-29	41.28	High mobility group B protein 15 OS=Arabidopsis thaliana GN=HMGB15 PE=2 SV=1	[more]
HMG11_ARATH	9.3e-23	38.22	Putative high mobility group B protein 11 OS=Arabidopsis thaliana GN=HMGB11 PE=3...	[more]
HMG10_ARATH	3.5e-22	39.87	High mobility group B protein 10 OS=Arabidopsis thaliana GN=HMGB10 PE=2 SV=1	[more]
ARID2_HUMAN	1.5e-12	43.96	AT-rich interactive domain-containing protein 2 OS=Homo sapiens GN=ARID2 PE=1 SV...	[more]

BLAST of Cla016121 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCD0_CUCME	2.7e-85	90.23	High mobility group family OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0L181_CUCSA	8.6e-84	89.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652850 PE=4 SV=1	[more]
A0A061FL25_THECC	6.9e-57	66.29	High mobility group family isoform 2 OS=Theobroma cacao GN=TCM_034318 PE=4 SV=1	[more]
A0A061FE61_THECC	6.4e-55	64.09	High mobility group family isoform 1 OS=Theobroma cacao GN=TCM_034318 PE=4 SV=1	[more]
A0A0B0NYJ2_GOSAR	4.2e-54	63.54	High mobility group B 9-like protein OS=Gossypium arboreum GN=F383_02064 PE=4 SV...	[more]

BLAST of Cla016121 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659104349\|ref\|XP_008452910.1\|	3.8e-85	90.23	PREDICTED: high mobility group B protein 9 [Cucumis melo]	[more]
gi\|449455571\|ref\|XP_004145526.1\|	1.2e-83	89.08	PREDICTED: high mobility group B protein 9 [Cucumis sativus]	[more]
gi\|590594732\|ref\|XP_007017934.1\|	9.8e-57	66.29	High mobility group family isoform 2 [Theobroma cacao]	[more]
gi\|590594728\|ref\|XP_007017933.1\|	9.2e-55	64.09	High mobility group family isoform 1 [Theobroma cacao]	[more]
gi\|728836723\|gb\|KHG16166.1\|	6.0e-54	63.54	High mobility group B 9 -like protein [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001606	ARID_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048856	anatomical structure development
biological_process	GO:0030154	cell differentiation
biological_process	GO:0008150	biological_process
biological_process	GO:0007165	signal transduction
biological_process	GO:0051707	response to other organism
biological_process	GO:0080090	regulation of primary metabolic process
biological_process	GO:0060255	regulation of macromolecule metabolic process
biological_process	GO:0031347	regulation of defense response
biological_process	GO:0031323	regulation of cellular metabolic process
biological_process	GO:0006796	phosphate-containing compound metabolic process
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0000741	karyogamy
biological_process	GO:0045087	innate immune response
biological_process	GO:1901701	cellular response to oxygen-containing compound
biological_process	GO:0071310	cellular response to organic substance
biological_process	GO:0071229	cellular response to acid chemical
biological_process	GO:0006464	cellular protein modification process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla016121	Cla016121.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001606	ARID DNA-binding domain	GENE3D	G3DSA:1.10.150.60		coord: 83..171 score: 7.3
IPR001606	ARID DNA-binding domain	PFAM	PF01388	ARID	coord: 84..164 score: 4.2
IPR001606	ARID DNA-binding domain	SMART	SM00501	bright_3	coord: 79..169 score: 2.8
IPR001606	ARID DNA-binding domain	PROFILE	PS51011	ARID	coord: 78..168 score: 21
IPR001606	ARID DNA-binding domain	unknown	SSF46774	ARID-like	coord: 75..178 score: 4.71
None	No IPR available	PANTHER	PTHR13711	SWI/SNF-RELATED CHROMATIN BINDING PROTEIN	coord: 49..228 score: 1.2
None	No IPR available	PANTHER	PTHR13711:SF202	HIGH MOBILITY GROUP B PROTEIN 10-RELATED	coord: 49..228 score: 1.2
None	No IPR available	SMART	SM01014	ARID_2	coord: 75..164 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla016121	Cla97C09G175330	Watermelon (97103) v2	wmwmbB041
Cla016121	Csa3G911790	Cucumber (Chinese Long) v2	cuwmB180
Cla016121	CSPI03G47260	Wild cucumber (PI 183967)	cpiwmB183

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla016121	Watermelon (97103) v1	wmwmB007
Cla016121	Watermelon (97103) v1	wmwmB020
Cla016121	Cucumber (Gy14) v1	cgywmB561
Cla016121	Cucumber (Gy14) v1	cgywmB582
Cla016121	Cucurbita maxima (Rimu)	cmawmB290
Cla016121	Cucurbita maxima (Rimu)	cmawmB472
Cla016121	Cucurbita maxima (Rimu)	cmawmB547
Cla016121	Cucurbita maxima (Rimu)	cmawmB779
Cla016121	Cucurbita moschata (Rifu)	cmowmB283
Cla016121	Cucurbita moschata (Rifu)	cmowmB465
Cla016121	Cucurbita moschata (Rifu)	cmowmB537
Cla016121	Cucurbita moschata (Rifu)	cmowmB773
Cla016121	Wild cucumber (PI 183967)	cpiwmB184
Cla016121	Melon (DHL92) v3.5.1	mewmB342
Cla016121	Melon (DHL92) v3.5.1	mewmB444
Cla016121	Cucumber (Chinese Long) v2	cuwmB187
Cla016121	Watermelon (Charleston Gray)	wcgwmB007
Cla016121	Watermelon (Charleston Gray)	wcgwmB045
Cla016121	Cucumber (Chinese Long) v2	cuwmB181
Cla016121	Cucurbita pepo (Zucchini)	cpewmB200
Cla016121	Cucurbita pepo (Zucchini)	cpewmB236
Cla016121	Cucurbita pepo (Zucchini)	cpewmB684
Cla016121	Bottle gourd (USVL1VR-Ls)	lsiwmB347
Cla016121	Bottle gourd (USVL1VR-Ls)	lsiwmB424
Cla016121	Cucumber (Gy14) v2	cgybwmB176
Cla016121	Cucumber (Gy14) v2	cgybwmB170
Cla016121	Cucumber (Gy14) v2	cgybwmB171
Cla016121	Melon (DHL92) v3.6.1	medwmB340
Cla016121	Melon (DHL92) v3.6.1	medwmB430
Cla016121	Melon (DHL92) v3.6.1	medwmB431
Cla016121	Silver-seed gourd	carwmB0560
Cla016121	Silver-seed gourd	carwmB0702
Cla016121	Silver-seed gourd	carwmB0776
Cla016121	Cucumber (Chinese Long) v3	cucwmB192
Cla016121	Cucumber (Chinese Long) v3	cucwmB193
Cla016121	Cucumber (Chinese Long) v3	cucwmB199
Cla016121	Watermelon (97103) v2	wmwmbB009
Cla016121	Wax gourd	wgowmB004
Cla016121	Wax gourd	wgowmB168
Cla016121	Wax gourd	wgowmB242