Cla016093 (gene) Watermelon (97103) v1

Overview
NameCla016093
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant
LocationChr2 : 7480094 .. 7480540 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGAAGTTCAAAATGTAGTTGAAATTCATGAAGATAAGGATGTAACTTGGTTTTTGGCTTTAGTTAAGGAACACAATACAAGATATCATTTGGTTGTTCATGTCACTAGTTCGTGTTTGGAAGTGTCTTCTAATGTTGTTTCTAGCGGAGCTGAGAATAATTTGCCTATTGTTCCTTCTTTTACACCTGTGATTGATGATGGTGATTTCCAAGTTATTATGGATATACATATTGCTCGTGATTTGAAAGAAAATGATGTGTTTGCTAGTAAAGAGATTTTATCAAATTGTTTTAACTTGATAGCAGTCAAGAAGAATTTTGAATTTAAGACTGTAAGATCAAACTCAAGATCAATTGTGTTTCAATGTGTTCAGGATGGTTGTCAATGGTATATGAGGGCATCCCGTTATAAGCGCAGTATTTTGTGGATGCTTAGGAAGTAG

mRNA sequence

ATGAATGAAGTTCAAAATGTAGTTGAAATTCATGAAGATAAGGATGTAACTTGGTTTTTGGCTTTAGTTAAGGAACACAATACAAGATATCATTTGGTTGTTCATGTCACTAGTTCGTGTTTGGAAGTGTCTTCTAATGTTGTTTCTAGCGGAGCTGAGAATAATTTGCCTATTGTTCCTTCTTTTACACCTGTGATTGATGATGGTGATTTCCAAGTTATTATGGATATACATATTGCTCGTGATTTGAAAGAAAATGATGTGTTTGCTAGTAAAGAGATTTTATCAAATTGTTTTAACTTGATAGCAGTCAAGAAGAATTTTGAATTTAAGACTGTAAGATCAAACTCAAGATCAATTGTGTTTCAATGTGTTCAGGATGGTTGTCAATGGTATATGAGGGCATCCCGTTATAAGCGCAGTATTTTGTGGATGCTTAGGAAGTAG

Coding sequence (CDS)

ATGAATGAAGTTCAAAATGTAGTTGAAATTCATGAAGATAAGGATGTAACTTGGTTTTTGGCTTTAGTTAAGGAACACAATACAAGATATCATTTGGTTGTTCATGTCACTAGTTCGTGTTTGGAAGTGTCTTCTAATGTTGTTTCTAGCGGAGCTGAGAATAATTTGCCTATTGTTCCTTCTTTTACACCTGTGATTGATGATGGTGATTTCCAAGTTATTATGGATATACATATTGCTCGTGATTTGAAAGAAAATGATGTGTTTGCTAGTAAAGAGATTTTATCAAATTGTTTTAACTTGATAGCAGTCAAGAAGAATTTTGAATTTAAGACTGTAAGATCAAACTCAAGATCAATTGTGTTTCAATGTGTTCAGGATGGTTGTCAATGGTATATGAGGGCATCCCGTTATAAGCGCAGTATTTTGTGGATGCTTAGGAAGTAG

Protein sequence

MNEVQNVVEIHEDKDVTWFLALVKEHNTRYHLVVHVTSSCLEVSSNVVSSGAENNLPIVPSFTPVIDDGDFQVIMDIHIARDLKENDVFASKEILSNCFNLIAVKKNFEFKTVRSNSRSIVFQCVQDGCQWYMRASRYKRSILWMLRK
Homology
[Close]
BLAST of Cla016093 vs. NCBI nr
Match: gi|659102873|ref|XP_008452360.1| (PREDICTED: uncharacterized protein LOC103493421 [Cucumis melo])

HSP 1 Score: 88.2 bits (217), Expect = 1.3e-14
Identity = 41/61 (67.21%), Postives = 47/61 (77.05%), Query Frame = 1 

Query: 88  VFASKEILSNCFNLIAVKKNFEFKTVRSNSRSIVFQCVQDGCQWYMRASRYKRSILWMLR 147
           +FASKE+LS  F  IA+K NFEFKTVRSNS+SI F+C QD C WY+RAS YK   LW LR
Sbjct: 1   MFASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASHYKGGELWRLR 60

Query: 148 K 149
           K
Sbjct: 61  K 61

[Close]
BLAST of Cla016093 vs. NCBI nr
Match: gi|697101534|ref|XP_009596589.1| (PREDICTED: uncharacterized protein LOC104092642 [Nicotiana tomentosiformis])

HSP 1 Score: 60.5 bits (145), Expect = 2.9e-06
Identity = 26/67 (38.81%), Postives = 39/67 (58.21%), Query Frame = 1 

Query: 82  DLKENDVFASKEILSNCFNLIAVKKNFEFKTVRSNSRSIVFQCVQDGCQWYMRASRYKRS 141
           ++    +F +KE L  CF   A+K +F+FKTVRS  +    +C  D C WY+ ASR + S
Sbjct: 198 EIAVGSLFENKESLKKCFTNSAIKYHFKFKTVRSTKKRYYLKCYDDNCSWYLHASRVRDS 257

Query: 142 ILWMLRK 149
            L+ + K
Sbjct: 258 ALFKISK 264

[Close]
BLAST of Cla016093 vs. NCBI nr
Match: gi|659102492|ref|XP_008452162.1| (PREDICTED: uncharacterized protein LOC103493267 [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 2.9e-06
Identity = 44/147 (29.93%), Postives = 72/147 (48.98%), Query Frame = 1 

Query: 13  DKDVTWFLALVKEHNTRY-HLVVH---VTSSCLEVSSNVVSSGAENNLPIVPSFTPVIDD 72
           D DV W   ++  +  R+  L+VH   + S CL  SS+              SF   I D
Sbjct: 4   DNDVKWVYHIITSNVERHIALIVHYVGLLSICLGSSSS-------------SSFQTQIHD 63

Query: 73  --GDFQVIMDIHIARD---LKENDVFASKEILSNCFNLIAVKKNFEFKTVRSNSRSIVFQ 132
             G F   MD+        LK  D+F++K +   C  +IA++ NF++ T++SN+  ++ Q
Sbjct: 64  DRGRFFENMDMSKVDSNFALKVQDMFSTKSLFKKCVQVIALRDNFQYVTMKSNNEVMILQ 123

Query: 133 CVQDGCQWYMRA--SRYKRSILWMLRK 149
           CV + C+W + A  S Y    +W+L +
Sbjct: 124 CVIENCKWSLHASCSIYGDRSIWVLTR 137

[Close]
BLAST of Cla016093 vs. NCBI nr
Match: gi|460386084|ref|XP_004238730.1| (PREDICTED: uncharacterized protein LOC101245457 [Solanum lycopersicum])

HSP 1 Score: 58.9 bits (141), Expect = 8.5e-06
Identity = 25/61 (40.98%), Postives = 38/61 (62.30%), Query Frame = 1 

Query: 88  VFASKEILSNCFNLIAVKKNFEFKTVRSNSRSIVFQCVQDGCQWYMRASRYKRSILWMLR 147
           +FASKE L  CF   A++ +F+FKTVRS  +    +C  D C+W++ +SR   S L+ + 
Sbjct: 189 LFASKECLKKCFTNSAIRNHFKFKTVRSTKKRYYLKCYDDNCRWFVHSSRISDSALFKIC 248

Query: 148 K 149
           K
Sbjct: 249 K 249

[Close]
BLAST of Cla016093 vs. NCBI nr
Match: gi|698515456|ref|XP_009802604.1| (PREDICTED: protein FAR1-RELATED SEQUENCE 4-like, partial [Nicotiana sylvestris])

HSP 1 Score: 58.9 bits (141), Expect = 8.5e-06
Identity = 28/66 (42.42%), Postives = 41/66 (62.12%), Query Frame = 1 

Query: 83  LKENDVFASKEILSNCFNLIAVKKNFEFKTVRSNSRSIVFQCVQDGCQWYMRASRYKRSI 142
           +K   VF  K+ + NCF+ +A+K +FEFK VRS+S+     C  D C+W +RA R K S 
Sbjct: 82  IKVGSVFDKKKSIINCFSNVAIKGHFEFKVVRSSSQRYSLTCNDDRCRWCVRAFRIKDST 141

Query: 143 LWMLRK 149
           L+ + K
Sbjct: 142 LFKIVK 147

The following BLAST results are available for this feature:
BLAST of Cla016093 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659102873|ref|XP_008452360.1|1.3e-1467.21PREDICTED: uncharacterized protein LOC103493421 [Cucumis melo][more]
gi|697101534|ref|XP_009596589.1|2.9e-0638.81PREDICTED: uncharacterized protein LOC104092642 [Nicotiana tomentosiformis][more]
gi|659102492|ref|XP_008452162.1|2.9e-0629.93PREDICTED: uncharacterized protein LOC103493267 [Cucumis melo][more]
gi|460386084|ref|XP_004238730.1|8.5e-0640.98PREDICTED: uncharacterized protein LOC101245457 [Solanum lycopersicum][more]
gi|698515456|ref|XP_009802604.1|8.5e-0642.42PREDICTED: protein FAR1-RELATED SEQUENCE 4-like, partial [Nicotiana sylvestris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004332Transposase_MuDR
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla016093Cla016093.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004332Transposase, MuDR, plantPFAMPF03108DBD_Tnp_Mutcoord: 85..145
score: 1.