Cla015948 (gene) Watermelon (97103) v1

NameCla015948
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionSorbitol transporter (AHRD V1 ***- Q68BJ8_MALDO); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter
LocationChr2 : 5363497 .. 5363790 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGAAGGTGGAAATTATTGTGGGTGTCGCCAATATCTACGCCACCATCGGCACTGCCATCGCGGGTAGAACCTCCGACTATATCGGCCACCGTTACACCATGGTTCTTGTAGGTTTCATTTTCTTCTTTGGCGCTTTTCTCATGGGCTTTGCCACCAACTTTGTCTCCCTCATGCTCGGCCAATTCATCATTGGACTCGGCACCGGATACGCTTTAGTTGTATCCCCTGTCTACATTGCCGATGTATCTCCGACGTCGTCTCGTGGCTTCTTCACCTCTGATATTTACTAA

mRNA sequence

ATGTGGAAGGTGGAAATTATTGTGGGTGTCGCCAATATCTACGCCACCATCGGCACTGCCATCGCGGGTAGAACCTCCGACTATATCGGCCACCGTTACACCATGGTTCTTGTAGGTTTCATTTTCTTCTTTGGCGCTTTTCTCATGGGCTTTGCCACCAACTTTGTCTCCCTCATGCTCGGCCAATTCATCATTGGACTCGGCACCGGATACGCTTTAGTTGTATCCCCTGTCTACATTGCCGATGTATCTCCGACGTCGTCTCGTGGCTTCTTCACCTCTGATATTTACTAA

Coding sequence (CDS)

ATGTGGAAGGTGGAAATTATTGTGGGTGTCGCCAATATCTACGCCACCATCGGCACTGCCATCGCGGGTAGAACCTCCGACTATATCGGCCACCGTTACACCATGGTTCTTGTAGGTTTCATTTTCTTCTTTGGCGCTTTTCTCATGGGCTTTGCCACCAACTTTGTCTCCCTCATGCTCGGCCAATTCATCATTGGACTCGGCACCGGATACGCTTTAGTTGTATCCCCTGTCTACATTGCCGATGTATCTCCGACGTCGTCTCGTGGCTTCTTCACCTCTGATATTTACTAA

Protein sequence

MWKVEIIVGVANIYATIGTAIAGRTSDYIGHRYTMVLVGFIFFFGAFLMGFATNFVSLMLGQFIIGLGTGYALVVSPVYIADVSPTSSRGFFTSDIY
BLAST of Cla015948 vs. Swiss-Prot
Match: PLT2_ARATH (Putative polyol transporter 2 OS=Arabidopsis thaliana GN=PLT2 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.6e-27
Identity = 53/92 (57.61%), Postives = 73/92 (79.35%), Query Frame = 1

Query: 3   KVEIIVGVANIYATIGTAIAGRTSDYIGHRYTMVLVGFIFFFGAFLMGFATNFVSLMLGQ 62
           ++EI++G+ NIY+ IG+  AGRTSD+IG RYT+VL GF FF GA LMGFATN+  +M+G+
Sbjct: 64  QLEILMGILNIYSLIGSGAAGRTSDWIGRRYTIVLAGFFFFCGALLMGFATNYPFIMVGR 123

Query: 63  FIIGLGTGYALVVSPVYIADVSPTSSRGFFTS 95
           F+ G+G GYA++++PVY  +V+P SSRGF +S
Sbjct: 124 FVAGIGVGYAMMIAPVYTTEVAPASSRGFLSS 155

BLAST of Cla015948 vs. Swiss-Prot
Match: PLT1_ARATH (Putative polyol transporter 1 OS=Arabidopsis thaliana GN=PLT1 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.7e-27
Identity = 52/92 (56.52%), Postives = 73/92 (79.35%), Query Frame = 1

Query: 3   KVEIIVGVANIYATIGTAIAGRTSDYIGHRYTMVLVGFIFFFGAFLMGFATNFVSLMLGQ 62
           ++EI++G+ NIY+ +G+  AGRTSD++G RYT+VL G  FF GA LMGFATN+  +M+G+
Sbjct: 64  QLEILMGILNIYSLVGSGAAGRTSDWLGRRYTIVLAGAFFFCGALLMGFATNYPFIMVGR 123

Query: 63  FIIGLGTGYALVVSPVYIADVSPTSSRGFFTS 95
           F+ G+G GYA++++PVY A+V+P SSRGF TS
Sbjct: 124 FVAGIGVGYAMMIAPVYTAEVAPASSRGFLTS 155

BLAST of Cla015948 vs. Swiss-Prot
Match: PLT5_ARATH (Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2)

HSP 1 Score: 115.5 bits (288), Expect = 3.2e-25
Identity = 54/92 (58.70%), Postives = 67/92 (72.83%), Query Frame = 1

Query: 3   KVEIIVGVANIYATIGTAIAGRTSDYIGHRYTMVLVGFIFFFGAFLMGFATNFVSLMLGQ 62
           ++ I+ G  NIY+ IG+  AGRTSD+IG RYT+VL G IFF GA LMG + N+  LM G+
Sbjct: 74  QIGILAGSLNIYSLIGSCAAGRTSDWIGRRYTIVLAGAIFFAGAILMGLSPNYAFLMFGR 133

Query: 63  FIIGLGTGYALVVSPVYIADVSPTSSRGFFTS 95
           FI G+G GYAL+++PVY A+VSP SSRGF  S
Sbjct: 134 FIAGIGVGYALMIAPVYTAEVSPASSRGFLNS 165

BLAST of Cla015948 vs. Swiss-Prot
Match: PLT3_ARATH (Probable polyol transporter 3 OS=Arabidopsis thaliana GN=PLT3 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 8.9e-20
Identity = 43/92 (46.74%), Postives = 63/92 (68.48%), Query Frame = 1

Query: 3   KVEIIVGVANIYATIGTAIAGRTSDYIGHRYTMVLVGFIFFFGAFLMGFATNFVSLMLGQ 62
           ++E++ G+ N+ A +G+  AG+TSD IG RYT+ L   IF  G+ LMG+  N+  LM+G+
Sbjct: 60  QIEVLAGILNLCALVGSLTAGKTSDVIGRRYTIALSAVIFLVGSVLMGYGPNYPVLMVGR 119

Query: 63  FIIGLGTGYALVVSPVYIADVSPTSSRGFFTS 95
            I G+G G+AL+++PVY A++S  S RGF TS
Sbjct: 120 CIAGVGVGFALMIAPVYSAEISSASHRGFLTS 151

BLAST of Cla015948 vs. Swiss-Prot
Match: PLT6_ARATH (Probable polyol transporter 6 OS=Arabidopsis thaliana GN=PLT6 PE=2 SV=2)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-18
Identity = 41/92 (44.57%), Postives = 61/92 (66.30%), Query Frame = 1

Query: 3   KVEIIVGVANIYATIGTAIAGRTSDYIGHRYTMVLVGFIFFFGAFLMGFATNFVSLMLGQ 62
           ++E++ G+ N+ A +G+ +AGRTSD IG RYT+VL   +F  G+ LMG+  N+  L+ G+
Sbjct: 55  QIEVLTGILNLCALVGSLLAGRTSDIIGRRYTIVLASILFMLGSILMGWGPNYPVLLSGR 114

Query: 63  FIIGLGTGYALVVSPVYIADVSPTSSRGFFTS 95
              GLG G+AL+V+PVY A+++  S RG   S
Sbjct: 115 CTAGLGVGFALMVAPVYSAEIATASHRGLLAS 146

BLAST of Cla015948 vs. TrEMBL
Match: A0A0A0K3P7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G253800 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.6e-34
Identity = 75/93 (80.65%), Postives = 82/93 (88.17%), Query Frame = 1

Query: 2   WKVEIIVGVANIYATIGTAIAGRTSDYIGHRYTMVLVGFIFFFGAFLMGFATNFVSLMLG 61
           +K+E +VGV NIY  IG A+AGRTSDYIG RYTMVL GFIFF GAFLMGFATN+VSLMLG
Sbjct: 70  FKLETLVGVNNIYIAIGAAVAGRTSDYIGRRYTMVLAGFIFFVGAFLMGFATNYVSLMLG 129

Query: 62  QFIIGLGTGYALVVSPVYIADVSPTSSRGFFTS 95
           + I GLGTGYALVVSPVYI +VSPTSSRGFFTS
Sbjct: 130 KSITGLGTGYALVVSPVYITEVSPTSSRGFFTS 162

BLAST of Cla015948 vs. TrEMBL
Match: A0A161YDQ6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_001593 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.6e-28
Identity = 59/92 (64.13%), Postives = 78/92 (84.78%), Query Frame = 1

Query: 3   KVEIIVGVANIYATIGTAIAGRTSDYIGHRYTMVLVGFIFFFGAFLMGFATNFVSLMLGQ 62
           ++E+IVG+ NI++ +G+A+AGRTSD+IG RYTMVL G IFF GA LMGFATNF  LM+G+
Sbjct: 68  QIEVIVGIINIFSLLGSAVAGRTSDWIGRRYTMVLAGVIFFLGAILMGFATNFAFLMVGR 127

Query: 63  FIIGLGTGYALVVSPVYIADVSPTSSRGFFTS 95
           F+ GLG GYA++++PVY A+V+P SSRGF TS
Sbjct: 128 FVAGLGVGYAMMIAPVYTAEVAPASSRGFLTS 159

BLAST of Cla015948 vs. TrEMBL
Match: A0A0A0K487_CUCSA (Sugar transporter OS=Cucumis sativus GN=Csa_7G253780 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 6.2e-28
Identity = 61/90 (67.78%), Postives = 73/90 (81.11%), Query Frame = 1

Query: 5   EIIVGVANIYATIGTAIAGRTSDYIGHRYTMVLVGFIFFFGAFLMGFATNFVSLMLGQFI 64
           E+++GV N+YA IG A AGRTSD+IG RYTMVL G IFF GA LMGFATN+  LM G+F+
Sbjct: 63  EVMIGVINLYALIGAAAAGRTSDWIGRRYTMVLAGVIFFLGAILMGFATNYEFLMFGRFV 122

Query: 65  IGLGTGYALVVSPVYIADVSPTSSRGFFTS 95
            G+G GYAL++SPVY A+VSP SSRGF TS
Sbjct: 123 AGIGVGYALMISPVYTAEVSPASSRGFLTS 152

BLAST of Cla015948 vs. TrEMBL
Match: Q9FQX3_APIGR (Mannitol transporter OS=Apium graveolens Dulce Group GN=Mat1 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 8.1e-28
Identity = 58/92 (63.04%), Postives = 76/92 (82.61%), Query Frame = 1

Query: 3   KVEIIVGVANIYATIGTAIAGRTSDYIGHRYTMVLVGFIFFFGAFLMGFATNFVSLMLGQ 62
           ++EII+G+ NIY+ +G+AIAGRTSD+IG RYTMVL G IFF GA  MG ATNF  LM G+
Sbjct: 62  QIEIIIGIINIYSLLGSAIAGRTSDWIGRRYTMVLAGIIFFLGAIFMGLATNFAFLMFGR 121

Query: 63  FIIGLGTGYALVVSPVYIADVSPTSSRGFFTS 95
           F+ G+G GYA++++PVY A+V+P+SSRGF TS
Sbjct: 122 FVAGIGVGYAMMIAPVYTAEVAPSSSRGFLTS 153

BLAST of Cla015948 vs. TrEMBL
Match: Q1AN24_OLEEU (Mannitol transporter 1 OS=Olea europaea PE=2 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-27
Identity = 59/92 (64.13%), Postives = 76/92 (82.61%), Query Frame = 1

Query: 3   KVEIIVGVANIYATIGTAIAGRTSDYIGHRYTMVLVGFIFFFGAFLMGFATNFVSLMLGQ 62
           K+EI+VG+ N ++ +G+A+AGRTSD+IG RYTMVL G IFF GA LMGFATN+  LM G+
Sbjct: 30  KLEIVVGIINFFSLVGSALAGRTSDWIGRRYTMVLAGAIFFVGAILMGFATNYSFLMFGR 89

Query: 63  FIIGLGTGYALVVSPVYIADVSPTSSRGFFTS 95
           F+ G+G GYAL+++PVY A+VSP SSRGF TS
Sbjct: 90  FVAGIGVGYALMIAPVYTAEVSPASSRGFLTS 121

BLAST of Cla015948 vs. NCBI nr
Match: gi|659092410|ref|XP_008447048.1| (PREDICTED: LOW QUALITY PROTEIN: putative polyol transporter 2 [Cucumis melo])

HSP 1 Score: 153.7 bits (387), Expect = 1.7e-34
Identity = 76/93 (81.72%), Postives = 81/93 (87.10%), Query Frame = 1

Query: 2   WKVEIIVGVANIYATIGTAIAGRTSDYIGHRYTMVLVGFIFFFGAFLMGFATNFVSLMLG 61
           +KVEI  GV NIY  IG A+AGRTSDYIG RYTMVL GFIFF GAFLMGFA N+VSLMLG
Sbjct: 66  FKVEIFAGVNNIYTAIGAAVAGRTSDYIGRRYTMVLAGFIFFVGAFLMGFANNYVSLMLG 125

Query: 62  QFIIGLGTGYALVVSPVYIADVSPTSSRGFFTS 95
           + IIGLGTGYALVVSPVYI +VSPTSSRGFFTS
Sbjct: 126 KSIIGLGTGYALVVSPVYITEVSPTSSRGFFTS 158

BLAST of Cla015948 vs. NCBI nr
Match: gi|449461166|ref|XP_004148313.1| (PREDICTED: putative polyol transporter 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 3.7e-34
Identity = 75/93 (80.65%), Postives = 82/93 (88.17%), Query Frame = 1

Query: 2   WKVEIIVGVANIYATIGTAIAGRTSDYIGHRYTMVLVGFIFFFGAFLMGFATNFVSLMLG 61
           +K+E +VGV NIY  IG A+AGRTSDYIG RYTMVL GFIFF GAFLMGFATN+VSLMLG
Sbjct: 70  FKLETLVGVNNIYIAIGAAVAGRTSDYIGRRYTMVLAGFIFFVGAFLMGFATNYVSLMLG 129

Query: 62  QFIIGLGTGYALVVSPVYIADVSPTSSRGFFTS 95
           + I GLGTGYALVVSPVYI +VSPTSSRGFFTS
Sbjct: 130 KSITGLGTGYALVVSPVYITEVSPTSSRGFFTS 162

BLAST of Cla015948 vs. NCBI nr
Match: gi|778726176|ref|XP_011659069.1| (PREDICTED: putative polyol transporter 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 3.7e-34
Identity = 75/93 (80.65%), Postives = 82/93 (88.17%), Query Frame = 1

Query: 2   WKVEIIVGVANIYATIGTAIAGRTSDYIGHRYTMVLVGFIFFFGAFLMGFATNFVSLMLG 61
           +K+E +VGV NIY  IG A+AGRTSDYIG RYTMVL GFIFF GAFLMGFATN+VSLMLG
Sbjct: 47  FKLETLVGVNNIYIAIGAAVAGRTSDYIGRRYTMVLAGFIFFVGAFLMGFATNYVSLMLG 106

Query: 62  QFIIGLGTGYALVVSPVYIADVSPTSSRGFFTS 95
           + I GLGTGYALVVSPVYI +VSPTSSRGFFTS
Sbjct: 107 KSITGLGTGYALVVSPVYITEVSPTSSRGFFTS 139

BLAST of Cla015948 vs. NCBI nr
Match: gi|659092943|ref|XP_008447302.1| (PREDICTED: LOW QUALITY PROTEIN: polyol transporter 5-like [Cucumis melo])

HSP 1 Score: 148.7 bits (374), Expect = 5.4e-33
Identity = 72/90 (80.00%), Postives = 80/90 (88.89%), Query Frame = 1

Query: 5   EIIVGVANIYATIGTAIAGRTSDYIGHRYTMVLVGFIFFFGAFLMGFATNFVSLMLGQFI 64
           EI++G+A IYATIG   AGRTSDYIG RYTMVL GFIFFFGAFL  FATN+VSLMLG+FI
Sbjct: 81  EILLGMAYIYATIGVVFAGRTSDYIGRRYTMVLAGFIFFFGAFLRSFATNYVSLMLGRFI 140

Query: 65  IGLGTGYALVVSPVYIADVSPTSSRGFFTS 95
            GLGTGYALVVSP+YIA+VSP+S RGFFTS
Sbjct: 141 TGLGTGYALVVSPIYIAEVSPSSCRGFFTS 170

BLAST of Cla015948 vs. NCBI nr
Match: gi|1021051159|gb|KZN08937.1| (hypothetical protein DCAR_001593 [Daucus carota subsp. sativus])

HSP 1 Score: 133.3 bits (334), Expect = 2.3e-28
Identity = 59/92 (64.13%), Postives = 78/92 (84.78%), Query Frame = 1

Query: 3   KVEIIVGVANIYATIGTAIAGRTSDYIGHRYTMVLVGFIFFFGAFLMGFATNFVSLMLGQ 62
           ++E+IVG+ NI++ +G+A+AGRTSD+IG RYTMVL G IFF GA LMGFATNF  LM+G+
Sbjct: 68  QIEVIVGIINIFSLLGSAVAGRTSDWIGRRYTMVLAGVIFFLGAILMGFATNFAFLMVGR 127

Query: 63  FIIGLGTGYALVVSPVYIADVSPTSSRGFFTS 95
           F+ GLG GYA++++PVY A+V+P SSRGF TS
Sbjct: 128 FVAGLGVGYAMMIAPVYTAEVAPASSRGFLTS 159

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PLT2_ARATH2.6e-2757.61Putative polyol transporter 2 OS=Arabidopsis thaliana GN=PLT2 PE=3 SV=1[more]
PLT1_ARATH5.7e-2756.52Putative polyol transporter 1 OS=Arabidopsis thaliana GN=PLT1 PE=3 SV=1[more]
PLT5_ARATH3.2e-2558.70Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2[more]
PLT3_ARATH8.9e-2046.74Probable polyol transporter 3 OS=Arabidopsis thaliana GN=PLT3 PE=3 SV=1[more]
PLT6_ARATH1.3e-1844.57Probable polyol transporter 6 OS=Arabidopsis thaliana GN=PLT6 PE=2 SV=2[more]
Match NameE-valueIdentityDescription
A0A0A0K3P7_CUCSA2.6e-3480.65Uncharacterized protein OS=Cucumis sativus GN=Csa_7G253800 PE=3 SV=1[more]
A0A161YDQ6_DAUCA1.6e-2864.13Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_001593 PE=4 SV=1[more]
A0A0A0K487_CUCSA6.2e-2867.78Sugar transporter OS=Cucumis sativus GN=Csa_7G253780 PE=3 SV=1[more]
Q9FQX3_APIGR8.1e-2863.04Mannitol transporter OS=Apium graveolens Dulce Group GN=Mat1 PE=2 SV=1[more]
Q1AN24_OLEEU1.1e-2764.13Mannitol transporter 1 OS=Olea europaea PE=2 SV=2[more]
Match NameE-valueIdentityDescription
gi|659092410|ref|XP_008447048.1|1.7e-3481.72PREDICTED: LOW QUALITY PROTEIN: putative polyol transporter 2 [Cucumis melo][more]
gi|449461166|ref|XP_004148313.1|3.7e-3480.65PREDICTED: putative polyol transporter 1 isoform X1 [Cucumis sativus][more]
gi|778726176|ref|XP_011659069.1|3.7e-3480.65PREDICTED: putative polyol transporter 1 isoform X2 [Cucumis sativus][more]
gi|659092943|ref|XP_008447302.1|5.4e-3380.00PREDICTED: LOW QUALITY PROTEIN: polyol transporter 5-like [Cucumis melo][more]
gi|1021051159|gb|KZN08937.1|2.3e-2864.13hypothetical protein DCAR_001593 [Daucus carota subsp. sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005828MFS_sugar_transport-like
IPR020846MFS_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0022857transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008643 carbohydrate transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0022891 substrate-specific transmembrane transporter activity
molecular_function GO:0022857 transmembrane transporter activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0005215 transporter activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla015948Cla015948.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005828Major facilitator, sugar transporter-likePFAMPF00083Sugar_trcoord: 6..94
score: 2.1
IPR020846Major facilitator superfamily domainPROFILEPS50850MFScoord: 1..97
score: 20
IPR020846Major facilitator superfamily domainunknownSSF103473MFS general substrate transportercoord: 6..93
score: 3.66
NoneNo IPR availableGENE3DG3DSA:1.20.1250.20coord: 4..92
score: 1.9
NoneNo IPR availablePANTHERPTHR23500FAMILY NOT NAMEDcoord: 3..94
score: 1.5
NoneNo IPR availablePANTHERPTHR23500:SF109POLYOL TRANSPORTER 5coord: 3..94
score: 1.5

The following gene(s) are paralogous to this gene:

None