Cla015942 (gene) Watermelon (97103) v1

Overview
NameCla015942
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr2 : 5308603 .. 5309353 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTTATCTTCTTCTCCTCCCTCACCAATAAAGTCCTCAGCCATCTTCAAAACTCCAGCGTCGATGTCCAGCTCAGTCTTTCTGATGCTGAATTTGCTCGAGTTGAGGCTGAGTTCTACTTATCCTTTCTGCTTGATCTCCGAGCGGTCCTCTCTGCCGGCCTCGGCTTCCCGGACTAGCTGTGGGTTTGATTTCTTCGAACGACAGTCTCTATTTCGGTGCTCTATTTCGGATTTCGACTTTGATCCTCTGTTTTCTAAACAAAGGTCCCTTGCTGAAAAGTGTGACCTCTCAAATTTTTGGGTTAATTTTAATTTAATTATCTCTAATTCTTTGAGTTGTATTTGAATTTTAAGTCTTAATTGAATTATTTTGAGAGATAATTGGATTTAAATTAAGTGAGAATGATTTAAAATTTTGGATTTAATGAAGTGTATTGGACCATCGGCAAATTTCTTGTGGTGGAGCCAATTCGGGGGTTGTAAGAACGTGGAGGTGGGTCAAGTTTTGGAGCGATGATGCCATGGGTGGGCGGCGGAGGAACTCATCGAATTCTTCCCCAGATCAATTCATGGAGATGCCGAGATCTGAAGTACTAAAGAAGTGGGTTGGGAAGTATATTGGGGAATTGGGAGCAGTTTTGAGTACCGGTGGGTGGAGTGAATCAGAGGCGGCGGAGATGGTGGAGTTCTCGGTGGTGAGATGGTTATGTTGGACAATCAGGCAGTTTTGGATGCTCTACTTTTGA

mRNA sequence

ATGACCTTATCTTCTTCTCCTCCCTCACCAATAAAGTCCTCAGCCATCTTCAAAACTCCAGCGTCGATGTCCAGCTCAGTCTTTCTGATGCTGAATTTGCTCGAGTTGAGGCTGAGTTCTACTTATCCTTTCTGCTTGATCTCCGAGCGGTCCTCTCTGCCGGCCTCGGCTTCCCGGACTAGCTGTGGGTTTGATTTCTTCGAACGACAGTCTCTATTTCGGTGCTCTATTTCGGATTTCGACTTTGATCCTCTGTTTTCTAAACAAAGTGTATTGGACCATCGGCAAATTTCTTGTGGTGGAGCCAATTCGGGGGTTGTAAGAACGTGGAGGTGGGTCAAGTTTTGGAGCGATGATGCCATGGGTGGGCGGCGGAGGAACTCATCGAATTCTTCCCCAGATCAATTCATGGAGATGCCGAGATCTGAAGTACTAAAGAAGTGGGTTGGGAAGTATATTGGGGAATTGGGAGCAGTTTTGAGTACCGGTGGGTGGAGTGAATCAGAGGCGGCGGAGATGGTGGAGTTCTCGGTGGTGAGATGGTTATGTTGGACAATCAGGCAGTTTTGGATGCTCTACTTTTGA

Coding sequence (CDS)

ATGACCTTATCTTCTTCTCCTCCCTCACCAATAAAGTCCTCAGCCATCTTCAAAACTCCAGCGTCGATGTCCAGCTCAGTCTTTCTGATGCTGAATTTGCTCGAGTTGAGGCTGAGTTCTACTTATCCTTTCTGCTTGATCTCCGAGCGGTCCTCTCTGCCGGCCTCGGCTTCCCGGACTAGCTGTGGGTTTGATTTCTTCGAACGACAGTCTCTATTTCGGTGCTCTATTTCGGATTTCGACTTTGATCCTCTGTTTTCTAAACAAAGTGTATTGGACCATCGGCAAATTTCTTGTGGTGGAGCCAATTCGGGGGTTGTAAGAACGTGGAGGTGGGTCAAGTTTTGGAGCGATGATGCCATGGGTGGGCGGCGGAGGAACTCATCGAATTCTTCCCCAGATCAATTCATGGAGATGCCGAGATCTGAAGTACTAAAGAAGTGGGTTGGGAAGTATATTGGGGAATTGGGAGCAGTTTTGAGTACCGGTGGGTGGAGTGAATCAGAGGCGGCGGAGATGGTGGAGTTCTCGGTGGTGAGATGGTTATGTTGGACAATCAGGCAGTTTTGGATGCTCTACTTTTGA

Protein sequence

MTLSSSPPSPIKSSAIFKTPASMSSSVFLMLNLLELRLSSTYPFCLISERSSLPASASRTSCGFDFFERQSLFRCSISDFDFDPLFSKQSVLDHRQISCGGANSGVVRTWRWVKFWSDDAMGGRRRNSSNSSPDQFMEMPRSEVLKKWVGKYIGELGAVLSTGGWSESEAAEMVEFSVVRWLCWTIRQFWMLYF
Homology
[Close]
BLAST of Cla015942 vs. TrEMBL
Match: A0A0A0LMG8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G277040 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.4e-31
Identity = 84/128 (65.62%), Postives = 93/128 (72.66%), Query Frame = 1 

Query: 62  CGFD---FFERQSLFRCSISDFDFDPLFSKQSVLDHRQI------SCGGANSGVVRTWRW 121
           CGFD   FFER+SLFRCS+SD D   LFSKQS L  + I      S    +SGVVRT RW
Sbjct: 189 CGFDLSDFFERESLFRCSVSDSD--SLFSKQSSLAQKSIVPSANFSRRSMDSGVVRTPRW 248

Query: 122 VKFWSDDAMGGRRRNSS---NSSPDQFMEMPRSEVLKKWVGKYIGELGAVLSTGGWSESE 178
           V+FWSD A+  RRRNSS   NSSPD+F EMPRSEV  KWVGKY+ ELG+VL TGGWSESE
Sbjct: 249 VEFWSDAAIDRRRRNSSSSSNSSPDRFFEMPRSEV-PKWVGKYLVELGSVLRTGGWSESE 308

[Close]
BLAST of Cla015942 vs. TrEMBL
Match: A0A061DHX1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_000620 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.8e-18
Identity = 59/129 (45.74%), Postives = 82/129 (63.57%), Query Frame = 1 

Query: 62  CGFD---FFERQSLFRCSISDFDF---DPLFSKQSVLDHRQISCGGANSGVV---RTWRW 121
           CGFD   FFE +SLFRCS SD +        S++S       S    ++G+V   RT RW
Sbjct: 192 CGFDISDFFEMESLFRCSESDPELLKKQRSVSEKSAGSSTNFSRRSLDAGLVTGSRTPRW 251

Query: 122 VKFWSDDAMGGRRRNSS----NSSPDQFMEMPRSEVLKKWVGKYIGELGAVLSTGGWSES 178
           V+FWSD A+  RRRNSS    NSSP+++ +MPR+++  KWV +YI ++G+VL  GGW ES
Sbjct: 252 VEFWSDAAVDRRRRNSSSSSSNSSPERYFDMPRTQI-PKWVDEYIEQIGSVLREGGWGES 311

[Close]
BLAST of Cla015942 vs. TrEMBL
Match: V7CF42_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G018800g PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-17
Identity = 61/134 (45.52%), Postives = 81/134 (60.45%), Query Frame = 1 

Query: 62  CGFD---FFERQSLFRCSISDFDFDPLFSKQSVLDHRQ----ISCGGANSGVV---RTWR 121
           CG D   FF+R+SLFRCS ++     LF KQ  +  +     +S G +   +    RT R
Sbjct: 189 CGLDLSDFFDRESLFRCSEAE---PILFKKQRSVSEKSTGVPVSAGFSRRSLDAGGRTPR 248

Query: 122 WVKFWSDDAMGGRRRNSSNSS--------PDQFMEMPRSEVLKKWVGKYIGELGAVLSTG 178
           WV+FW+D A   RRRNSS+SS        P++F EMPRS+V   WV +YIG++G+VL  G
Sbjct: 249 WVEFWTDAATDKRRRNSSSSSLSLSASSSPERFFEMPRSKV-PGWVEEYIGQIGSVLKAG 308

[Close]
BLAST of Cla015942 vs. TrEMBL
Match: I1J968_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G186100 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.0e-17
Identity = 63/132 (47.73%), Postives = 79/132 (59.85%), Query Frame = 1 

Query: 62  CGFD---FFERQSLFRCSISDFDFDPLFSKQSVLDHRQ--ISCGGANS-----GVVRTWR 121
           CG D   FF+R+SLFR S +D     L  KQ  +  +   +S   A S        RT R
Sbjct: 189 CGLDLSDFFDRESLFRSSEAD---PILLKKQRSVSEKSTGVSVSAAFSRRSLDSGTRTPR 248

Query: 122 WVKFWSDDAMGGRRRNSSNSS------PDQFMEMPRSEVLKKWVGKYIGELGAVLSTGGW 178
           WV+FWSD A   RRRNSS+SS      P++F EMPRS+V   WV +YIG++G+VL  GGW
Sbjct: 249 WVEFWSDAATDKRRRNSSSSSLSASSSPERFFEMPRSKV-PGWVEEYIGQIGSVLKAGGW 308

[Close]
BLAST of Cla015942 vs. TrEMBL
Match: W9R216_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011066 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.6e-17
Identity = 58/125 (46.40%), Postives = 79/125 (63.20%), Query Frame = 1 

Query: 62  CGFD---FFERQSLFRCSISDFDF---DPLFSKQSVLDHRQISCGGANSGVVRTWRWVKF 121
           CG D   FF+R+SLFR S SD          S++S       S    ++G  RT RWV+F
Sbjct: 197 CGLDLSDFFDRESLFRNSDSDLHLLKKQRSVSEKSAGSSSNFSRRSLDTGA-RTPRWVEF 256

Query: 122 WSDDAMGGRRRNSSNSS---PDQFMEMPRSEVLKKWVGKYIGELGAVLSTGGWSESEAAE 178
           WSD A+  RRRNSS+SS   P++F +MPRSE   KWV +Y+ ++G+VL  GGWSES+ +E
Sbjct: 257 WSDAAVDRRRRNSSSSSSSSPERFFDMPRSEA-PKWVDEYVKQIGSVLRRGGWSESDISE 316

[Close]
BLAST of Cla015942 vs. NCBI nr
Match: gi|659115876|ref|XP_008457783.1| (PREDICTED: uncharacterized protein LOC103497393 [Cucumis melo])

HSP 1 Score: 145.6 bits (366), Expect = 9.1e-32
Identity = 83/128 (64.84%), Postives = 91/128 (71.09%), Query Frame = 1 

Query: 62  CGFD---FFERQSLFRCSISDFDFDPLFSKQSVLDHRQI------SCGGANSGVVRTWRW 121
           CG D   FFER+SLFRCS SD D D LFSKQ  L  + I      S    +SGVVRT RW
Sbjct: 189 CGLDLSDFFERESLFRCSASDSDSDSLFSKQRSLAQKSIVPSANFSRRSMDSGVVRTPRW 248

Query: 122 VKFWSDDAMGGRRRNSS---NSSPDQFMEMPRSEVLKKWVGKYIGELGAVLSTGGWSESE 178
           V+FWSD A+  RRRNSS   NSSPD+F EMPRSEV  KWVGKY+ ELG+VL TGGWSESE
Sbjct: 249 VEFWSDAAIDRRRRNSSSSSNSSPDRFFEMPRSEV-PKWVGKYLVELGSVLKTGGWSESE 308

[Close]
BLAST of Cla015942 vs. NCBI nr
Match: gi|449463975|ref|XP_004149705.1| (PREDICTED: uncharacterized protein LOC101213140 [Cucumis sativus])

HSP 1 Score: 144.4 bits (363), Expect = 2.0e-31
Identity = 84/128 (65.62%), Postives = 93/128 (72.66%), Query Frame = 1 

Query: 62  CGFD---FFERQSLFRCSISDFDFDPLFSKQSVLDHRQI------SCGGANSGVVRTWRW 121
           CGFD   FFER+SLFRCS+SD D   LFSKQS L  + I      S    +SGVVRT RW
Sbjct: 189 CGFDLSDFFERESLFRCSVSDSD--SLFSKQSSLAQKSIVPSANFSRRSMDSGVVRTPRW 248

Query: 122 VKFWSDDAMGGRRRNSS---NSSPDQFMEMPRSEVLKKWVGKYIGELGAVLSTGGWSESE 178
           V+FWSD A+  RRRNSS   NSSPD+F EMPRSEV  KWVGKY+ ELG+VL TGGWSESE
Sbjct: 249 VEFWSDAAIDRRRRNSSSSSNSSPDRFFEMPRSEV-PKWVGKYLVELGSVLRTGGWSESE 308

[Close]
BLAST of Cla015942 vs. NCBI nr
Match: gi|590704798|ref|XP_007047259.1| (Uncharacterized protein TCM_000620 [Theobroma cacao])

HSP 1 Score: 100.9 bits (250), Expect = 2.6e-18
Identity = 59/129 (45.74%), Postives = 82/129 (63.57%), Query Frame = 1 

Query: 62  CGFD---FFERQSLFRCSISDFDF---DPLFSKQSVLDHRQISCGGANSGVV---RTWRW 121
           CGFD   FFE +SLFRCS SD +        S++S       S    ++G+V   RT RW
Sbjct: 192 CGFDISDFFEMESLFRCSESDPELLKKQRSVSEKSAGSSTNFSRRSLDAGLVTGSRTPRW 251

Query: 122 VKFWSDDAMGGRRRNSS----NSSPDQFMEMPRSEVLKKWVGKYIGELGAVLSTGGWSES 178
           V+FWSD A+  RRRNSS    NSSP+++ +MPR+++  KWV +YI ++G+VL  GGW ES
Sbjct: 252 VEFWSDAAVDRRRRNSSSSSSNSSPERYFDMPRTQI-PKWVDEYIEQIGSVLREGGWGES 311

[Close]
BLAST of Cla015942 vs. NCBI nr
Match: gi|1021516489|ref|XP_016201737.1| (PREDICTED: uncharacterized protein LOC107642777 [Arachis ipaensis])

HSP 1 Score: 98.6 bits (244), Expect = 1.3e-17
Identity = 57/130 (43.85%), Postives = 75/130 (57.69%), Query Frame = 1 

Query: 62  CGFD---FFERQSLFRCSISDFDF--------DPLFSKQSVLDHRQISCGGANSGVVRTW 121
           CG D   FFER+SLFR S SD           +      +V   R +  GG      RT 
Sbjct: 195 CGLDLSDFFERESLFRSSESDPQVLKKQRSVSEKSAGSSTVFSRRSLDAGG------RTP 254

Query: 122 RWVKFWSDDAMGGRRRNSSNS---SPDQFMEMPRSEVLKKWVGKYIGELGAVLSTGGWSE 178
           RWV+FW++ A   RRRNSS+S   SP++F EMP    +  WV +YIG++G+VL  GGWSE
Sbjct: 255 RWVEFWTEAATDRRRRNSSSSASSSPERFFEMPGRSKVPGWVDEYIGQIGSVLKAGGWSE 314

[Close]
BLAST of Cla015942 vs. NCBI nr
Match: gi|593787528|ref|XP_007156803.1| (hypothetical protein PHAVU_002G018800g [Phaseolus vulgaris])

HSP 1 Score: 98.2 bits (243), Expect = 1.7e-17
Identity = 61/134 (45.52%), Postives = 81/134 (60.45%), Query Frame = 1 

Query: 62  CGFD---FFERQSLFRCSISDFDFDPLFSKQSVLDHRQ----ISCGGANSGVV---RTWR 121
           CG D   FF+R+SLFRCS ++     LF KQ  +  +     +S G +   +    RT R
Sbjct: 189 CGLDLSDFFDRESLFRCSEAE---PILFKKQRSVSEKSTGVPVSAGFSRRSLDAGGRTPR 248

Query: 122 WVKFWSDDAMGGRRRNSSNSS--------PDQFMEMPRSEVLKKWVGKYIGELGAVLSTG 178
           WV+FW+D A   RRRNSS+SS        P++F EMPRS+V   WV +YIG++G+VL  G
Sbjct: 249 WVEFWTDAATDKRRRNSSSSSLSLSASSSPERFFEMPRSKV-PGWVEEYIGQIGSVLKAG 308

The following BLAST results are available for this feature:
BLAST of Cla015942 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMG8_CUCSA1.4e-3165.63Uncharacterized protein OS=Cucumis sativus GN=Csa_2G277040 PE=4 SV=1[more]
A0A061DHX1_THECC1.8e-1845.74Uncharacterized protein OS=Theobroma cacao GN=TCM_000620 PE=4 SV=1[more]
V7CF42_PHAVU1.2e-1745.52Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G018800g PE=4 SV=1[more]
I1J968_SOYBN2.0e-1747.73Uncharacterized protein OS=Glycine max GN=GLYMA_01G186100 PE=4 SV=1[more]
W9R216_9ROSA2.6e-1746.40Uncharacterized protein OS=Morus notabilis GN=L484_011066 PE=4 SV=1[more]
BLAST of Cla015942 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659115876|ref|XP_008457783.1|9.1e-3264.84PREDICTED: uncharacterized protein LOC103497393 [Cucumis melo][more]
gi|449463975|ref|XP_004149705.1|2.0e-3165.63PREDICTED: uncharacterized protein LOC101213140 [Cucumis sativus][more]
gi|590704798|ref|XP_007047259.1|2.6e-1845.74Uncharacterized protein TCM_000620 [Theobroma cacao][more]
gi|1021516489|ref|XP_016201737.1|1.3e-1743.85PREDICTED: uncharacterized protein LOC107642777 [Arachis ipaensis][more]
gi|593787528|ref|XP_007156803.1|1.7e-1745.52hypothetical protein PHAVU_002G018800g [Phaseolus vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla015942Cla015942.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR32011FAMILY NOT NAMEDcoord: 65..175
score: 1.2
NoneNo IPR availablePANTHERPTHR32011:SF2SUBFAMILY NOT NAMEDcoord: 65..175
score: 1.2