Cla015935 (gene) Watermelon (97103) v1

NameCla015935
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionChromatin remodeling complex subunit (AHRD V1 ***- B9HRP3_POPTR)
LocationChr2 : 5162563 .. 5163063 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGAAGCGCCGCGACACCGCAAATTTACCCCCCAATACCACCGATTCTCCCTCATCGGAGCCGCCTTCTTCTCGCCGTCGTGCTGGAGCTCAGAAGCGAAAGGCTAGCTCTCTTGGTGGCTCTAACTCCTCATCCGGGCCCTCGAAACGCGTTACTCGCGACAAATCTGCGCTTTCGCATCCTCCAAATCATAACGGCCCCTTCACCAGAGCTCGACTTGGCCCTAACAATGGCGCTGGGGCAGCATCGGCTAACGCGGCTGGAGGTCTCGCCGCCGGATCAGTTAAGGCGGAGGGCTCTTTACTTCATTCCGAAGTTCAGCGTGGAGATGCGTTGGTCGCTGCGGCGGAAGAATTGAATAAGGCGAGTAGATTGGCTAATTTGGAGGCGTCTTTCGAAGCTGATTTCGAAGCTATTAAATCTCGAGGTGCAAATGTTCATGTCGTTCCGAATCATTGTGGTGAGTTTCGGTTTTACTCTTTTGCGAGATCCTGA

mRNA sequence

ATGGAGGAGAAGCGCCGCGACACCGCAAATTTACCCCCCAATACCACCGATTCTCCCTCATCGGAGCCGCCTTCTTCTCGCCGTCGTGCTGGAGCTCAGAAGCGAAAGGCTAGCTCTCTTGGTGGCTCTAACTCCTCATCCGGGCCCTCGAAACGCGTTACTCGCGACAAATCTGCGCTTTCGCATCCTCCAAATCATAACGGCCCCTTCACCAGAGCTCGACTTGGCCCTAACAATGGCGCTGGGGCAGCATCGGCTAACGCGGCTGGAGGTCTCGCCGCCGGATCAGTTAAGGCGGAGGGCTCTTTACTTCATTCCGAAGTTCAGCGTGGAGATGCGTTGGTCGCTGCGGCGGAAGAATTGAATAAGGCGAGTAGATTGGCTAATTTGGAGGCGTCTTTCGAAGCTGATTTCGAAGCTATTAAATCTCGAGGTGCAAATGTTCATGTCGTTCCGAATCATTGTGGTGAGTTTCGGTTTTACTCTTTTGCGAGATCCTGA

Coding sequence (CDS)

ATGGAGGAGAAGCGCCGCGACACCGCAAATTTACCCCCCAATACCACCGATTCTCCCTCATCGGAGCCGCCTTCTTCTCGCCGTCGTGCTGGAGCTCAGAAGCGAAAGGCTAGCTCTCTTGGTGGCTCTAACTCCTCATCCGGGCCCTCGAAACGCGTTACTCGCGACAAATCTGCGCTTTCGCATCCTCCAAATCATAACGGCCCCTTCACCAGAGCTCGACTTGGCCCTAACAATGGCGCTGGGGCAGCATCGGCTAACGCGGCTGGAGGTCTCGCCGCCGGATCAGTTAAGGCGGAGGGCTCTTTACTTCATTCCGAAGTTCAGCGTGGAGATGCGTTGGTCGCTGCGGCGGAAGAATTGAATAAGGCGAGTAGATTGGCTAATTTGGAGGCGTCTTTCGAAGCTGATTTCGAAGCTATTAAATCTCGAGGTGCAAATGTTCATGTCGTTCCGAATCATTGTGGTGAGTTTCGGTTTTACTCTTTTGCGAGATCCTGA

Protein sequence

MEEKRRDTANLPPNTTDSPSSEPPSSRRRAGAQKRKASSLGGSNSSSGPSKRVTRDKSALSHPPNHNGPFTRARLGPNNGAGAASANAAGGLAAGSVKAEGSLLHSEVQRGDALVAAAEELNKASRLANLEASFEADFEAIKSRGANVHVVPNHCGEFRFYSFARS
BLAST of Cla015935 vs. Swiss-Prot
Match: SWI3D_ARATH (SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana GN=SWI3D PE=1 SV=3)

HSP 1 Score: 119.4 bits (298), Expect = 3.7e-26
Identity = 85/166 (51.20%), Postives = 99/166 (59.64%), Query Frame = 1

Query: 1   MEEKRRDTAN---LPPNTTDSPSSEP-PSSRRRAGAQKRKASSLGGSNS-SSGPSKRV-T 60
           MEEKRRD+A       ++ DSP+SEP P+ RRR G  KRKA++LGGSN  SS PSKR+ T
Sbjct: 1   MEEKRRDSAGTLAFAGSSGDSPASEPMPAPRRRGGGLKRKANALGGSNFFSSAPSKRMLT 60

Query: 61  RDKSAL-SHPPNHNGPFTRARLGPNNGAGAASANAAGGLAAGSVKAEGSLLHSEVQRGDA 120
           R+K+ L S  P HNGP TRAR  P+    AA            VK+E  +L+  V     
Sbjct: 61  REKAMLASFSPVHNGPLTRARQAPSIMPSAADG----------VKSE--VLNVAVGADGE 120

Query: 121 LVAAAEELNKASR-LANLEASFEADFEAIKSRGANVHVVPNHCGEF 159
                EE NKA R    LEA  EADFEAI+SR +NVHVVPNHCG F
Sbjct: 121 KPKEEEERNKAIREWEALEAKIEADFEAIRSRDSNVHVVPNHCGWF 154

BLAST of Cla015935 vs. TrEMBL
Match: A0A0A0K5Y5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G267920 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.1e-69
Identity = 137/158 (86.71%), Postives = 146/158 (92.41%), Query Frame = 1

Query: 1   MEEKRRDTANLPPNTTDSPSSEPPSSRRRAGAQKRKASSLGGSNSSSGPSKRVTRDKSAL 60
           ME+KRRDTAN+P NTTDSPSSEPPSSRRRAGA KRKAS+LG SN+ S PSKRVTRDKSAL
Sbjct: 1   MEDKRRDTANIPSNTTDSPSSEPPSSRRRAGAHKRKASALGASNTLSAPSKRVTRDKSAL 60

Query: 61  SHPPNHNGPFTRARLGPNNGAGAASANAAGGLAAGSVKAEGSLLHSEVQRGDALVAAAEE 120
           SHPPNHNGPFTRARLGPNN AGAAS   AGGLA GSVKA+GSLLHSEVQRGDAL++AAEE
Sbjct: 61  SHPPNHNGPFTRARLGPNNVAGAAS---AGGLAPGSVKADGSLLHSEVQRGDALLSAAEE 120

Query: 121 LNKASRLANLEASFEADFEAIKSRGANVHVVPNHCGEF 159
           LNKA+RLANLEASFE D+EAIKSRGANVHVVPNHCG F
Sbjct: 121 LNKATRLANLEASFEVDYEAIKSRGANVHVVPNHCGWF 155

BLAST of Cla015935 vs. TrEMBL
Match: M5VJC1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000770mg PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 8.1e-36
Identity = 90/160 (56.25%), Postives = 111/160 (69.38%), Query Frame = 1

Query: 1   MEEKRRDTANL-PPNTTDSPSSEPPSSRRRAGAQKRKASSLGGSNSSSGPSKRVTRDKSA 60
           MEEKRRD A   PP+  +SP++EP S+RRR GAQKRKASSLGGS SSS PSKR TR+K+ 
Sbjct: 1   MEEKRRDAAGAQPPSNAESPAAEPSSARRRGGAQKRKASSLGGSTSSSTPSKRFTREKAM 60

Query: 61  LSHPPNHNGPFTRARLGPNNGAGAASANAAGGLAAGSVKAEGSLLHSEVQRGDAL-VAAA 120
           LSHPP HNGP TRAR GP++  G+ASA+ A            ++  +  +R D +  A A
Sbjct: 61  LSHPPIHNGPLTRARQGPSS-LGSASASGA------------AVKPTVAKRPDPVGEAVA 120

Query: 121 EELNKASRLANLEASFEADFEAIKSRGANVHVVPNHCGEF 159
           E + + S L  LEAS EA+FEAI+SR AN HVVP+HCG F
Sbjct: 121 ELVKRESELEALEASMEAEFEAIRSRNANAHVVPSHCGWF 147

BLAST of Cla015935 vs. TrEMBL
Match: A0A0S3SDJ9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G221100 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 5.2e-35
Identity = 90/161 (55.90%), Postives = 106/161 (65.84%), Query Frame = 1

Query: 1   MEEKRRDTANLPPNTTDSPSSEPPSSRRRAGAQKRKASSLGGSNSSSGPSKRVTRDKSAL 60
           MEEKRR+ A   P+  DSP+SEP SSRRRAGA KRK+++L  S SSS PSKR  RDK++ 
Sbjct: 1   MEEKRREAA---PSAADSPASEPASSRRRAGANKRKSAALNASGSSSAPSKRAARDKASP 60

Query: 61  SHPPN-HNGPFTRARLGPNNGAGAASANAAGGLAAGSVKAEGSLLHSEVQRGDAL--VAA 120
            HPP  HNGP TRAR  PN+ A AAS+NAA         A  ++ HSE     A    A 
Sbjct: 61  LHPPPLHNGPLTRARQTPNSLAAAASSNAA-------ASAPAAVKHSERTHPSAADSAAL 120

Query: 121 AEELNKASRLANLEASFEADFEAIKSRGANVHVVPNHCGEF 159
           AE+L K S    LEA+ EA+FEAI+SRGAN HVVP HCG F
Sbjct: 121 AEQLRKESEWETLEAAIEAEFEAIRSRGANAHVVPTHCGWF 151

BLAST of Cla015935 vs. TrEMBL
Match: A0A0L9V7H3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g171400 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 5.2e-35
Identity = 90/161 (55.90%), Postives = 106/161 (65.84%), Query Frame = 1

Query: 1   MEEKRRDTANLPPNTTDSPSSEPPSSRRRAGAQKRKASSLGGSNSSSGPSKRVTRDKSAL 60
           MEEKRR+ A   P+  DSP+SEP SSRRRAGA KRK+++L  S SSS PSKR  RDK++ 
Sbjct: 1   MEEKRREAA---PSAADSPASEPASSRRRAGANKRKSAALNASGSSSAPSKRAARDKASP 60

Query: 61  SHPPN-HNGPFTRARLGPNNGAGAASANAAGGLAAGSVKAEGSLLHSEVQRGDAL--VAA 120
            HPP  HNGP TRAR  PN+ A AAS+NAA         A  ++ HSE     A    A 
Sbjct: 61  LHPPPLHNGPLTRARQTPNSLAAAASSNAA-------ASAPAAVKHSERTHPSAADSAAL 120

Query: 121 AEELNKASRLANLEASFEADFEAIKSRGANVHVVPNHCGEF 159
           AE+L K S    LEA+ EA+FEAI+SRGAN HVVP HCG F
Sbjct: 121 AEQLRKESEWETLEAAIEAEFEAIRSRGANAHVVPTHCGWF 151

BLAST of Cla015935 vs. TrEMBL
Match: W9R169_9ROSA (SWI/SNF complex subunit SWI3D OS=Morus notabilis GN=L484_026920 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.4e-34
Identity = 87/167 (52.10%), Postives = 104/167 (62.28%), Query Frame = 1

Query: 1   MEEKRRDTANLPPNTTDSPSSEPPSSRRRAGAQKRKASSLGGSNSSSGPSKRVTRDKSAL 60
           MEEKRRD       + DSP++EP SSRRRAG QKRK+ +LG S SSS PSKR TR+KS+L
Sbjct: 1   MEEKRRDAGTSTSASGDSPATEPTSSRRRAGGQKRKSGNLGSSGSSSAPSKRATREKSSL 60

Query: 61  SHPPNHNGPFTRARLGPN---------NGAGAASANAAGGLAAGSVKAEGSLLHSEVQRG 120
           SHPP HNGP TRAR  P+         +GA AASA+     AA   +  G L    V   
Sbjct: 61  SHPPIHNGPLTRARQAPSSLSSSLASADGAPAASASGGAKPAAEQARVPGVLGGETV--- 120

Query: 121 DALVAAAEELNKASRLANLEASFEADFEAIKSRGANVHVVPNHCGEF 159
            A  + AEEL K S L  LE+  EA F+AI+SR  + HVVP+HCG F
Sbjct: 121 -AAASVAEELRKESELEALESGLEAKFQAIRSRSNSAHVVPSHCGWF 163

BLAST of Cla015935 vs. NCBI nr
Match: gi|659092382|ref|XP_008447039.1| (PREDICTED: SWI/SNF complex subunit SWI3D [Cucumis melo])

HSP 1 Score: 275.8 bits (704), Expect = 5.0e-71
Identity = 139/158 (87.97%), Postives = 146/158 (92.41%), Query Frame = 1

Query: 1   MEEKRRDTANLPPNTTDSPSSEPPSSRRRAGAQKRKASSLGGSNSSSGPSKRVTRDKSAL 60
           ME+KRRDTAN+P NTTDS SSEPPSSRRRAGA KRKAS+LG SNS S PSKRVTRDKSAL
Sbjct: 1   MEDKRRDTANIPSNTTDSSSSEPPSSRRRAGAHKRKASALGASNSLSAPSKRVTRDKSAL 60

Query: 61  SHPPNHNGPFTRARLGPNNGAGAASANAAGGLAAGSVKAEGSLLHSEVQRGDALVAAAEE 120
           SHPPNHNGPFTRARLGPNN  GAAS NAAGGLA GSVKA+GSLLHSEVQRGDALV+AAEE
Sbjct: 61  SHPPNHNGPFTRARLGPNNVPGAASVNAAGGLAPGSVKADGSLLHSEVQRGDALVSAAEE 120

Query: 121 LNKASRLANLEASFEADFEAIKSRGANVHVVPNHCGEF 159
           L+KA+RLANLEASFEADFEAIKSRGA VHVVPNHCG F
Sbjct: 121 LSKATRLANLEASFEADFEAIKSRGAKVHVVPNHCGWF 158

BLAST of Cla015935 vs. NCBI nr
Match: gi|449465389|ref|XP_004150410.1| (PREDICTED: SWI/SNF complex subunit SWI3D [Cucumis sativus])

HSP 1 Score: 270.8 bits (691), Expect = 1.6e-69
Identity = 137/158 (86.71%), Postives = 146/158 (92.41%), Query Frame = 1

Query: 1   MEEKRRDTANLPPNTTDSPSSEPPSSRRRAGAQKRKASSLGGSNSSSGPSKRVTRDKSAL 60
           ME+KRRDTAN+P NTTDSPSSEPPSSRRRAGA KRKAS+LG SN+ S PSKRVTRDKSAL
Sbjct: 1   MEDKRRDTANIPSNTTDSPSSEPPSSRRRAGAHKRKASALGASNTLSAPSKRVTRDKSAL 60

Query: 61  SHPPNHNGPFTRARLGPNNGAGAASANAAGGLAAGSVKAEGSLLHSEVQRGDALVAAAEE 120
           SHPPNHNGPFTRARLGPNN AGAAS   AGGLA GSVKA+GSLLHSEVQRGDAL++AAEE
Sbjct: 61  SHPPNHNGPFTRARLGPNNVAGAAS---AGGLAPGSVKADGSLLHSEVQRGDALLSAAEE 120

Query: 121 LNKASRLANLEASFEADFEAIKSRGANVHVVPNHCGEF 159
           LNKA+RLANLEASFE D+EAIKSRGANVHVVPNHCG F
Sbjct: 121 LNKATRLANLEASFEVDYEAIKSRGANVHVVPNHCGWF 155

BLAST of Cla015935 vs. NCBI nr
Match: gi|700189111|gb|KGN44344.1| (hypothetical protein Csa_7G267920 [Cucumis sativus])

HSP 1 Score: 270.8 bits (691), Expect = 1.6e-69
Identity = 137/158 (86.71%), Postives = 146/158 (92.41%), Query Frame = 1

Query: 1   MEEKRRDTANLPPNTTDSPSSEPPSSRRRAGAQKRKASSLGGSNSSSGPSKRVTRDKSAL 60
           ME+KRRDTAN+P NTTDSPSSEPPSSRRRAGA KRKAS+LG SN+ S PSKRVTRDKSAL
Sbjct: 1   MEDKRRDTANIPSNTTDSPSSEPPSSRRRAGAHKRKASALGASNTLSAPSKRVTRDKSAL 60

Query: 61  SHPPNHNGPFTRARLGPNNGAGAASANAAGGLAAGSVKAEGSLLHSEVQRGDALVAAAEE 120
           SHPPNHNGPFTRARLGPNN AGAAS   AGGLA GSVKA+GSLLHSEVQRGDAL++AAEE
Sbjct: 61  SHPPNHNGPFTRARLGPNNVAGAAS---AGGLAPGSVKADGSLLHSEVQRGDALLSAAEE 120

Query: 121 LNKASRLANLEASFEADFEAIKSRGANVHVVPNHCGEF 159
           LNKA+RLANLEASFE D+EAIKSRGANVHVVPNHCG F
Sbjct: 121 LNKATRLANLEASFEVDYEAIKSRGANVHVVPNHCGWF 155

BLAST of Cla015935 vs. NCBI nr
Match: gi|1021488093|ref|XP_016187016.1| (PREDICTED: SWI/SNF complex subunit SWI3D [Arachis ipaensis])

HSP 1 Score: 167.5 bits (423), Expect = 1.9e-38
Identity = 98/163 (60.12%), Postives = 115/163 (70.55%), Query Frame = 1

Query: 1   MEEKRRDTANLPPNTT-DSPSSEPPSSRRRAGAQKRKASSLGGSNSSSGPSKRVTRDKSA 60
           MEEKRRD A  PP+ T DSP+SEP S+RRRAGAQKRKASSL G++SSS PSKRVTRDK +
Sbjct: 1   MEEKRRDAAPPPPSATADSPASEPTSTRRRAGAQKRKASSLSGNSSSSTPSKRVTRDKPS 60

Query: 61  LSH----PPNHNGPFTRARLGPNNGAGAASANAAGGLAAGSVKAEGSLLHSEVQRGDALV 120
             H    P +HNGP TRAR  P + A A+S+  A G AA S  A  ++ HSE   G   V
Sbjct: 61  PLHHHTPPLHHNGPLTRARQIPASAAAASSS--APGSAAASASAPPAVKHSERGLGADAV 120

Query: 121 AAAEELNKASRLANLEASFEADFEAIKSRGANVHVVPNHCGEF 159
           A AEE+ KAS   +LEAS EA FEAI+SRG + HVVP+HCG F
Sbjct: 121 ALAEEIRKASERESLEASMEAAFEAIRSRGTDSHVVPSHCGWF 161

BLAST of Cla015935 vs. NCBI nr
Match: gi|1012031012|ref|XP_015952026.1| (PREDICTED: SWI/SNF complex subunit SWI3D [Arachis duranensis])

HSP 1 Score: 167.2 bits (422), Expect = 2.5e-38
Identity = 100/163 (61.35%), Postives = 116/163 (71.17%), Query Frame = 1

Query: 1   MEEKRRDTANLPPNTT-DSPSSEPPSSRRRAGAQKRKASSLGGSNSSSGPSKRVTRDK-S 60
           MEEKRRD A  PP+ T DSP+SEP S+RRRAGAQKRKASSL G++SSS PSKRVTRDK S
Sbjct: 1   MEEKRRDAAPPPPSATADSPASEPTSTRRRAGAQKRKASSLSGNSSSSTPSKRVTRDKPS 60

Query: 61  ALSH---PPNHNGPFTRARLGPNNGAGAASANAAGGLAAGSVKAEGSLLHSEVQRGDALV 120
            L H   P +HNGP TRAR  P + A A+S  +A G AA S  A  ++ HSE   G   V
Sbjct: 61  PLHHHTPPLHHNGPLTRARQIPASAASASS--SAPGSAAASASAPPAVKHSERCLGADAV 120

Query: 121 AAAEELNKASRLANLEASFEADFEAIKSRGANVHVVPNHCGEF 159
           A AEE+ KAS   +LEAS EA FEAI+SRG + HVVP+HCG F
Sbjct: 121 ALAEEIRKASERESLEASMEAAFEAIRSRGTDSHVVPSHCGWF 161

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
SWI3D_ARATH3.7e-2651.20SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana GN=SWI3D PE=1 SV=3[more]
Match NameE-valueIdentityDescription
A0A0A0K5Y5_CUCSA1.1e-6986.71Uncharacterized protein OS=Cucumis sativus GN=Csa_7G267920 PE=4 SV=1[more]
M5VJC1_PRUPE8.1e-3656.25Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000770mg PE=4 SV=1[more]
A0A0S3SDJ9_PHAAN5.2e-3555.90Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G221100 PE=... [more]
A0A0L9V7H3_PHAAN5.2e-3555.90Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g171400 PE=4 SV=1[more]
W9R169_9ROSA3.4e-3452.10SWI/SNF complex subunit SWI3D OS=Morus notabilis GN=L484_026920 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659092382|ref|XP_008447039.1|5.0e-7187.97PREDICTED: SWI/SNF complex subunit SWI3D [Cucumis melo][more]
gi|449465389|ref|XP_004150410.1|1.6e-6986.71PREDICTED: SWI/SNF complex subunit SWI3D [Cucumis sativus][more]
gi|700189111|gb|KGN44344.1|1.6e-6986.71hypothetical protein Csa_7G267920 [Cucumis sativus][more]
gi|1021488093|ref|XP_016187016.1|1.9e-3860.12PREDICTED: SWI/SNF complex subunit SWI3D [Arachis ipaensis][more]
gi|1012031012|ref|XP_015952026.1|2.5e-3861.35PREDICTED: SWI/SNF complex subunit SWI3D [Arachis duranensis][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla015935Cla015935.1mRNA