Cla015881 (gene) Watermelon (97103) v1

Overview
NameCla015881
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionConserved protein (AHRD V1 *-*- C7TFZ2_LACRL)
LocationChr2 : 4442995 .. 4443312 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTCGAGAGCATTCCACCAGTTTTTGGCGACTTTCACTTTCAACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTCGAGTCCTGTCATGATCGCGCACTCGACGAAAGAGCTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGA

mRNA sequence

ATGGGTTTCGAGAGCATTCCACCAGTTTTTGGCGACTTTCACTTTCAACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTCGAGTCCTGTCATGATCGCGCACTCGACGAAAGAGCTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGA

Coding sequence (CDS)

ATGGGTTTCGAGAGCATTCCACCAGTTTTTGGCGACTTTCACTTTCAACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTCGAGTCCTGTCATGATCGCGCACTCGACGAAAGAGCTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGA

Protein sequence

MGFESIPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVRAVSQSQCG
Homology
[Close]
BLAST of Cla015881 vs. TrEMBL
Match: A0A0A9RWP6_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 5.3e-33
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 31  KNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPL 90
           +   PPRLTAAAGTELAGASSSSPVMIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPL
Sbjct: 73  RTLAPPRLTAAAGTELAGASSSSPVMIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPL 132

Query: 91  LPPVGVRAVSQSQCG 106
           LPPVGVRAVSQSQCG
Sbjct: 133 LPPVGVRAVSQSQCG 147

[Close]
BLAST of Cla015881 vs. TrEMBL
Match: K4D8K8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.1e-12
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 1 

Query: 56 MIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLP 93
          MIAH  KELYKRHCPSSLTRYCWIGLSPIVQDSPLLP
Sbjct: 1  MIAHLMKELYKRHCPSSLTRYCWIGLSPIVQDSPLLP 37

[Close]
BLAST of Cla015881 vs. TrEMBL
Match: K4C3F3_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-09
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 1 

Query: 54 PVMIAHSTKELYKRHCPSSLTRYCWIGLSPIVQD 88
          PVMIAHSTKELYKRHCPS LTRYCWI LSPI+Q+
Sbjct: 17 PVMIAHSTKELYKRHCPSLLTRYCWIELSPIIQE 50

[Close]
BLAST of Cla015881 vs. TrEMBL
Match: A0A0P6AFG5_9CRUS (Uncharacterized protein OS=Daphnia magna PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-07
Identity = 45/85 (52.94%), Postives = 51/85 (60.00%), Query Frame = 1 

Query: 28  VIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKE---LYKRHC----PSSLTRYCWIG 87
           +IP N    R+TAAAGTELA   S S V +   T E   LYK       PSS TR+ W  
Sbjct: 1   MIPDNAWILRITAAAGTELADPYSYSTVKLP--TWEGFFLYKSSLQSIGPSSCTRHGWFR 60

Query: 88  LSPIVQDSPLLPPVGVRAVSQSQCG 106
           L+PI Q S LLPPVGV +VSQ QCG
Sbjct: 61  LAPIDQYSSLLPPVGVWSVSQYQCG 83

[Close]
BLAST of Cla015881 vs. TrEMBL
Match: A0A0V0H4B3_SOLCH (Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-06
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1 

Query: 70  PSSLTRYCWIGLSPIVQDSPLLPPVGVRAVSQSQCG 106
           PSS TRYC + LSPI ++SPLLPPVGV AVSQSQCG
Sbjct: 111 PSSRTRYCSVRLSPIAENSPLLPPVGVWAVSQSQCG 146

The following BLAST results are available for this feature:
BLAST of Cla015881 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A9RWP6_ARUDO5.3e-3394.67Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
K4D8K8_SOLLC5.1e-1294.59Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
K4C3F3_SOLLC1.8e-0988.24Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
A0A0P6AFG5_9CRUS1.0e-0752.94Uncharacterized protein OS=Daphnia magna PE=4 SV=1[more]
A0A0V0H4B3_SOLCH1.9e-0677.78Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla015881Cla015881.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla015881Watermelon (97103) v2wmwmbB315
Cla015881Watermelon (97103) v2wmwmbB317
Cla015881Watermelon (97103) v2wmwmbB349
Cla015881Wax gourdwgowmB272
Cla015881Wax gourdwgowmB343
Cla015881Wax gourdwgowmB383
Cla015881Watermelon (97103) v1wmwmB073
Cla015881Watermelon (97103) v1wmwmB160
Cla015881Cucumber (Gy14) v1cgywmB296
Cla015881Cucurbita maxima (Rimu)cmawmB123
Cla015881Cucurbita maxima (Rimu)cmawmB503
Cla015881Cucurbita maxima (Rimu)cmawmB526
Cla015881Cucurbita maxima (Rimu)cmawmB586
Cla015881Cucurbita moschata (Rifu)cmowmB111
Cla015881Cucurbita moschata (Rifu)cmowmB158
Cla015881Cucurbita moschata (Rifu)cmowmB496
Cla015881Cucurbita moschata (Rifu)cmowmB516
Cla015881Cucurbita moschata (Rifu)cmowmB580
Cla015881Melon (DHL92) v3.5.1mewmB239
Cla015881Melon (DHL92) v3.5.1mewmB327
Cla015881Watermelon (Charleston Gray)wcgwmB101
Cla015881Watermelon (Charleston Gray)wcgwmB198
Cla015881Watermelon (Charleston Gray)wcgwmB422
Cla015881Cucumber (Chinese Long) v2cuwmB149
Cla015881Cucumber (Chinese Long) v2cuwmB153
Cla015881Cucumber (Chinese Long) v2cuwmB604
Cla015881Cucurbita pepo (Zucchini)cpewmB115
Cla015881Cucurbita pepo (Zucchini)cpewmB268
Cla015881Cucurbita pepo (Zucchini)cpewmB304
Cla015881Cucurbita pepo (Zucchini)cpewmB667
Cla015881Cucurbita pepo (Zucchini)cpewmB748
Cla015881Cucurbita pepo (Zucchini)cpewmB808
Cla015881Bottle gourd (USVL1VR-Ls)lsiwmB079
Cla015881Bottle gourd (USVL1VR-Ls)lsiwmB106
Cla015881Bottle gourd (USVL1VR-Ls)lsiwmB493
Cla015881Cucumber (Gy14) v2cgybwmB141
Cla015881Cucumber (Gy14) v2cgybwmB144
Cla015881Cucumber (Gy14) v2cgybwmB566
Cla015881Melon (DHL92) v3.6.1medwmB231
Cla015881Melon (DHL92) v3.6.1medwmB324
Cla015881Silver-seed gourdcarwmB0203
Cla015881Silver-seed gourdcarwmB0305
Cla015881Silver-seed gourdcarwmB0985
Cla015881Cucumber (Chinese Long) v3cucwmB160
Cla015881Cucumber (Chinese Long) v3cucwmB163
Cla015881Cucumber (Chinese Long) v3cucwmB634