Cla015880 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla015880
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	ORF16-lacZ fusion protein (AHRD V1 -- Q57HV4_SALCH)
Location	Chr2 : 4441754 .. 4442047 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCTGTACATACCGCCCGTCACACCCTGGGAATGGGTTTCGCCCGAAGCATCGGACCAATGATCACCCATGACTTCCGTGTACCACTAGTGCCACAAAGGCTTTTGGTGGCATTATTGGGGCATAAAAACGNNNNGATTGAGGTGAAGTCACAACAAGGTAGCCGTAGGGGAACCTGTGGCTGGATTGAATCCTTCGCGATGGAAATGCCCTCTTCCTTCCCCCAACCCAACTAA

mRNA sequence

ATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCTGTACATACCGCCCGTCACACCCTGGGAATGGGTTTCGCCCGAAGCATCGGACCAATGATCACCCATGACTTCCGTGTACCACTAGTGCCACAAAGGCTTTTGGTGGCATTATTGGGGCATAAAAACGNNNNGATTGAGGTGAAGTCACAACAAGGTAGCCGTAGGGGAACCTGTGGCTGGATTGAATCCTTCGCGATGGAAATGCCCTCTTCCTTCCCCCAACCCAACTAA

Coding sequence (CDS)

ATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCTGTACATACCGCCCGTCACACCCTGGGAATGGGTTTCGCCCGAAGCATCGGACCAATGATCACCCATGACTTCCGTGTACCACTAGTGCCACAAAGGCTTTTGGTGGCATTATTGGGGCATAAAAACGNNNNGATTGAGGTGAAGTCACAACAAGGTAGCCGTAGGGGAACCTGTGGCTGGATTGAATCCTTCGCGATGGAAATGCCCTCTTCCTTCCCCCAACCCAACTAA

Protein sequence

MKLESLVIADQHAAVNMYPGPVHTARHTLGMGFARSIGPMITHDFRVPLVPQRLLVALLGHKNXXIEVKSQQGSRRGTCGWIESFAMEMPSSFPQPN

Homology

[Close]

BLAST of Cla015880 vs. TrEMBL
Match: R4IV41_VICFA (Uncharacterized protein OS=Vicia faba GN=rrn18 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.4e-24
Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 1


Query: 1   MKLESLVIADQHAAVNMYPGPVHTARHTLGMGFARSIGPMITHDFRVPLVPQRLLVALLG 60
           MKLESLVIADQHAAVNMYPGPVHTARHTLG+GFARSIGPMITHDF VPLVPQRLLV LL 
Sbjct: 64  MKLESLVIADQHAAVNMYPGPVHTARHTLGIGFARSIGPMITHDFCVPLVPQRLLVVLLA 123

Query: 61  H 62
           H
Sbjct: 124 H 124

[Close]

BLAST of Cla015880 vs. TrEMBL
Match: A0A0C4B3M7_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-21
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 1


Query: 1   MKLESLVIADQHAAVNMYPGPVHTARHTLGMGFARSIGPMITHDFRVPLVPQRLLVALLG 60
           M L+SLVIADQHAAVNMYPGPVHT RHTLG+GFARSIGPMITHDF VPLVPQR LV LL 
Sbjct: 53  MNLKSLVIADQHAAVNMYPGPVHTVRHTLGIGFARSIGPMITHDFCVPLVPQRPLVVLLA 112

Query: 61  H 62
           H
Sbjct: 113 H 113

[Close]

BLAST of Cla015880 vs. TrEMBL
Match: S8D505_9LAMI (Uncharacterized protein OS=Genlisea aurea GN=M569_00256 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-19
Identity = 51/61 (83.61%), Postives = 53/61 (86.89%), Query Frame = 1


Query: 1   MKLESLVIADQHAAVNMYPGPVHTARHTLGMGFARSIGPMITHDFRVPLVPQRLLVALLG 60
           MKL+SLVIA QHAAVNMYPGPVHTARHTLG+GFARSIGP I HDF   LVPQRLLV LL 
Sbjct: 113 MKLKSLVIAHQHAAVNMYPGPVHTARHTLGIGFARSIGPTIAHDFCGTLVPQRLLVVLLA 172

Query: 61  H 62
           H
Sbjct: 173 H 173

[Close]

BLAST of Cla015880 vs. TrEMBL
Match: K4BH93_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-19
Identity = 51/61 (83.61%), Postives = 54/61 (88.52%), Query Frame = 1


Query: 1   MKLESLVIADQHAAVNMYPGPVHTARHTLGMGFARSIGPMITHDFRVPLVPQRLLVALLG 60
           MK+ES+VIADQHAAVNMYPGPVHTA HTLG+GFARSIGPMITHDF   LVPQR LV LL 
Sbjct: 130 MKVESIVIADQHAAVNMYPGPVHTACHTLGIGFARSIGPMITHDFCDTLVPQRPLVVLLV 189

Query: 61  H 62
           H
Sbjct: 190 H 190

[Close]

BLAST of Cla015880 vs. TrEMBL
Match: K4D964_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-19
Identity = 52/61 (85.25%), Postives = 53/61 (86.89%), Query Frame = 1


Query: 1   MKLESLVIADQHAAVNMYPGPVHTARHTLGMGFARSIGPMITHDFRVPLVPQRLLVALLG 60
           MKLESLVIADQHAAVNMYPG VHTA HTLG+GFARSIGPMITHDF   LVPQR LV LL 
Sbjct: 48  MKLESLVIADQHAAVNMYPGSVHTACHTLGIGFARSIGPMITHDFCGTLVPQRPLVVLLA 107

Query: 61  H 62
           H
Sbjct: 108 H 108

[Close]

BLAST of Cla015880 vs. NCBI nr
Match: gi|442803208|gb|AGC78943.1| (hypothetical protein (mitochondrion) [Vicia faba])

HSP 1 Score: 118.2 bits (295), Expect = 7.8e-24
Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 1


Query: 1   MKLESLVIADQHAAVNMYPGPVHTARHTLGMGFARSIGPMITHDFRVPLVPQRLLVALLG 60
           MKLESLVIADQHAAVNMYPGPVHTARHTLG+GFARSIGPMITHDF VPLVPQRLLV LL 
Sbjct: 64  MKLESLVIADQHAAVNMYPGPVHTARHTLGIGFARSIGPMITHDFCVPLVPQRLLVVLLA 123

Query: 61  H 62
           H
Sbjct: 124 H 124

[Close]

BLAST of Cla015880 vs. NCBI nr
Match: gi|527209880|gb|EPS74490.1| (hypothetical protein M569_00256 [Genlisea aurea])

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-19
Identity = 51/61 (83.61%), Postives = 53/61 (86.89%), Query Frame = 1


Query: 1   MKLESLVIADQHAAVNMYPGPVHTARHTLGMGFARSIGPMITHDFRVPLVPQRLLVALLG 60
           MKL+SLVIA QHAAVNMYPGPVHTARHTLG+GFARSIGP I HDF   LVPQRLLV LL 
Sbjct: 113 MKLKSLVIAHQHAAVNMYPGPVHTARHTLGIGFARSIGPTIAHDFCGTLVPQRLLVVLLA 172

Query: 61  H 62
           H
Sbjct: 173 H 173

[Close]

BLAST of Cla015880 vs. NCBI nr
Match: gi|917535440|ref|WP_052141857.1| (hypothetical protein [Burkholderia pseudomallei])

HSP 1 Score: 65.1 bits (157), Expect = 7.8e-08
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 1


Query: 1  MKLESLVIADQHAAVNMYPGPVHTARHTLGMGFARS 37
          MKLESLVIADQHAAVN +PG VHTARHT+G+GF RS
Sbjct: 31 MKLESLVIADQHAAVNTFPGLVHTARHTMGVGFTRS 66

[Close]

BLAST of Cla015880 vs. NCBI nr
Match: gi|260924843|gb|EEX91411.1| (conserved hypothetical protein [Brucella ceti M13/05/1])

HSP 1 Score: 63.5 bits (153), Expect = 2.3e-07
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 1


Query: 1  MKLESLVIADQHAAVNMYPGPVHTARHTLGMGFAR 36
          MKLESLVIADQHAAVN +PG VHTARHT+G+GF R
Sbjct: 58 MKLESLVIADQHAAVNTFPGLVHTARHTMGVGFTR 92

[Close]

BLAST of Cla015880 vs. NCBI nr
Match: gi|479645162|gb|ENS17103.1| (hypothetical protein B972_01486, partial [Brucella abortus F10/05-11])

HSP 1 Score: 63.5 bits (153), Expect = 2.3e-07
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 1


Query: 1  MKLESLVIADQHAAVNMYPGPVHTARHTLGMGFAR 36
          MKLESLVIADQHAAVN +PG VHTARHT+G+GF R
Sbjct: 12 MKLESLVIADQHAAVNTFPGLVHTARHTMGVGFTR 46

The following BLAST results are available for this feature:

BLAST of Cla015880 vs. TrEMBL


Match Name	E-value	Identity	Description
R4IV41_VICFA	5.4e-24	93.44	Uncharacterized protein OS=Vicia faba GN=rrn18 PE=4 SV=1	[more]
A0A0C4B3M7_WHEAT	1.1e-21	86.89	Uncharacterized protein OS=Triticum aestivum PE=4 SV=1	[more]
S8D505_9LAMI	1.1e-19	83.61	Uncharacterized protein OS=Genlisea aurea GN=M569_00256 PE=4 SV=1	[more]
K4BH93_SOLLC	1.4e-19	83.61	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
K4D964_SOLLC	1.4e-19	85.25	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of Cla015880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|442803208\|gb\|AGC78943.1\|	7.8e-24	93.44	hypothetical protein (mitochondrion) [Vicia faba]	[more]
gi\|527209880\|gb\|EPS74490.1\|	1.5e-19	83.61	hypothetical protein M569_00256 [Genlisea aurea]	[more]
gi\|917535440\|ref\|WP_052141857.1\|	7.8e-08	83.33	hypothetical protein [Burkholderia pseudomallei]	[more]
gi\|260924843\|gb\|EEX91411.1\|	2.3e-07	82.86	conserved hypothetical protein [Brucella ceti M13/05/1]	[more]
gi\|479645162\|gb\|ENS17103.1\|	2.3e-07	82.86	hypothetical protein B972_01486, partial [Brucella abortus F10/05-11]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla015880	Cla015880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34890	FAMILY NOT NAMED	coord: 1..61 score: 7.6
None	No IPR available	PANTHER	PTHR34890:SF1	SUBFAMILY NOT NAMED	coord: 1..61 score: 7.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla015880	Bottle gourd (USVL1VR-Ls)	lsiwmB106
Cla015880	Bottle gourd (USVL1VR-Ls)	lsiwmB493
Cla015880	Cucumber (Gy14) v2	cgybwmB141
Cla015880	Cucumber (Gy14) v2	cgybwmB144
Cla015880	Cucumber (Gy14) v2	cgybwmB566
Cla015880	Melon (DHL92) v3.6.1	medwmB231
Cla015880	Melon (DHL92) v3.6.1	medwmB324
Cla015880	Silver-seed gourd	carwmB0203
Cla015880	Silver-seed gourd	carwmB0305
Cla015880	Silver-seed gourd	carwmB0985
Cla015880	Cucumber (Chinese Long) v3	cucwmB160
Cla015880	Cucumber (Chinese Long) v3	cucwmB163
Cla015880	Cucumber (Chinese Long) v3	cucwmB634
Cla015880	Watermelon (97103) v2	wmwmbB315
Cla015880	Watermelon (97103) v2	wmwmbB317
Cla015880	Watermelon (97103) v2	wmwmbB349
Cla015880	Wax gourd	wgowmB272
Cla015880	Wax gourd	wgowmB343
Cla015880	Wax gourd	wgowmB383
Cla015880	Watermelon (97103) v1	wmwmB073
Cla015880	Watermelon (97103) v1	wmwmB160
Cla015880	Cucumber (Gy14) v1	cgywmB296
Cla015880	Cucurbita maxima (Rimu)	cmawmB123
Cla015880	Cucurbita maxima (Rimu)	cmawmB503
Cla015880	Cucurbita maxima (Rimu)	cmawmB526
Cla015880	Cucurbita maxima (Rimu)	cmawmB586
Cla015880	Cucurbita moschata (Rifu)	cmowmB111
Cla015880	Cucurbita moschata (Rifu)	cmowmB158
Cla015880	Cucurbita moschata (Rifu)	cmowmB496
Cla015880	Cucurbita moschata (Rifu)	cmowmB516
Cla015880	Cucurbita moschata (Rifu)	cmowmB580
Cla015880	Melon (DHL92) v3.5.1	mewmB239
Cla015880	Melon (DHL92) v3.5.1	mewmB327
Cla015880	Watermelon (Charleston Gray)	wcgwmB101
Cla015880	Watermelon (Charleston Gray)	wcgwmB198
Cla015880	Watermelon (Charleston Gray)	wcgwmB422
Cla015880	Cucumber (Chinese Long) v2	cuwmB149
Cla015880	Cucumber (Chinese Long) v2	cuwmB153
Cla015880	Cucumber (Chinese Long) v2	cuwmB604
Cla015880	Cucurbita pepo (Zucchini)	cpewmB115
Cla015880	Cucurbita pepo (Zucchini)	cpewmB268
Cla015880	Cucurbita pepo (Zucchini)	cpewmB304
Cla015880	Cucurbita pepo (Zucchini)	cpewmB667
Cla015880	Cucurbita pepo (Zucchini)	cpewmB748
Cla015880	Cucurbita pepo (Zucchini)	cpewmB808
Cla015880	Bottle gourd (USVL1VR-Ls)	lsiwmB079