Cla015860 (gene) Watermelon (97103) v1

NameCla015860
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionAuxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein
LocationChr2 : 4209324 .. 4209578 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCTTCTCCATCTTCTTAAAAGAAGCCAAGGCGTTTCAGCAATTCCCAAGGGCTATTTTGCGGTATACGTCGGAGAGAGCCAAAAGAAGCGGTTTGTGATTCCGATTACTTACTTGAATCAACCATGGTTTCAAGAGTTGCTTAGTCAGACTGAAGAAGAATTCGGTTACCATCATCCAATAGGAGGTCTTACTATTCATTGCGAAGATGATATCTTCATTGACCTCATCTCTCGTTTGAATGATCTATGA

mRNA sequence

ATGGGGCTTCTCCATCTTCTTAAAAGAAGCCAAGGCGTTTCAGCAATTCCCAAGGGCTATTTTGCGGTATACGTCGGAGAGAGCCAAAAGAAGCGGTTTGTGATTCCGATTACTTACTTGAATCAACCATGGTTTCAAGAGTTGCTTAGTCAGACTGAAGAAGAATTCGGTTACCATCATCCAATAGGAGGTCTTACTATTCATTGCGAAGATGATATCTTCATTGACCTCATCTCTCGTTTGAATGATCTATGA

Coding sequence (CDS)

ATGGGGCTTCTCCATCTTCTTAAAAGAAGCCAAGGCGTTTCAGCAATTCCCAAGGGCTATTTTGCGGTATACGTCGGAGAGAGCCAAAAGAAGCGGTTTGTGATTCCGATTACTTACTTGAATCAACCATGGTTTCAAGAGTTGCTTAGTCAGACTGAAGAAGAATTCGGTTACCATCATCCAATAGGAGGTCTTACTATTCATTGCGAAGATGATATCTTCATTGACCTCATCTCTCGTTTGAATGATCTATGA

Protein sequence

MGLLHLLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRLNDL
BLAST of Cla015860 vs. Swiss-Prot
Match: SAU24_ARATH (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana GN=SAUR24 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.4e-23
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 1

Query: 1  MGLLHLLKRSQGV-SAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYH 60
          +G   +L RS G  SA PKG+ AVYVGESQKKR+++P++YLNQP FQ LLS++EEEFG+ 
Sbjct: 8  LGAKKILSRSTGAGSAAPKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEEFGFD 67

Query: 61 HPIGGLTIHCEDDIFIDLISRL 82
          HP+GGLTI C +D FI++ SRL
Sbjct: 68 HPMGGLTIPCPEDTFINVTSRL 89

BLAST of Cla015860 vs. Swiss-Prot
Match: SAU22_ARATH (Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana GN=SAUR22 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.7e-22
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = 1

Query: 1  MGLLHLLKRSQG-VSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYH 60
          +G   +L RS   VSA PKG+ AVYVGESQKKR+++P++YLNQP FQ LLS++E+EFG+ 
Sbjct: 8  LGAKKILSRSTAAVSAAPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEDEFGFD 67

Query: 61 HPIGGLTIHCEDDIFIDLISRL 82
          HP+GGLTI C +D FI++ SRL
Sbjct: 68 HPMGGLTIPCHEDTFINVTSRL 89

BLAST of Cla015860 vs. Swiss-Prot
Match: SAU23_ARATH (Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana GN=SAUR23 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.8e-22
Identity = 48/77 (62.34%), Postives = 62/77 (80.52%), Query Frame = 1

Query: 6  LLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGL 65
          L + +  VSA PKG+ AVYVGESQKKR+++P++YLNQP FQ LLS++EEEFG+ HP+GGL
Sbjct: 14 LSRSAAAVSAPPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEEEFGFDHPMGGL 73

Query: 66 TIHCEDDIFIDLISRLN 83
          TI C +D FI++ SRL+
Sbjct: 74 TIPCPEDTFINVTSRLH 90

BLAST of Cla015860 vs. Swiss-Prot
Match: SAU20_ARATH (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana GN=SAUR20 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 4.8e-22
Identity = 50/81 (61.73%), Postives = 62/81 (76.54%), Query Frame = 1

Query: 1  MGLLHLLKRSQ-GVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYH 60
          +G   +L RS    SA PKG+ AVYVGESQKKR+++PI+YLNQP FQ LLS++EEEFG+ 
Sbjct: 8  LGAKKILSRSTTAASAAPKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEEFGFD 67

Query: 61 HPIGGLTIHCEDDIFIDLISR 81
          HP+GGLTI C +D FI++ SR
Sbjct: 68 HPMGGLTIPCPEDTFINVTSR 88

BLAST of Cla015860 vs. Swiss-Prot
Match: SAU21_ARATH (Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana GN=SAUR21 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-21
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = 1

Query: 1  MGLLHLLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHH 60
          +G   +L RS   SA PKG+ AVYVGESQKKR+++P++YL+QP FQ LLS++EEEFG+ H
Sbjct: 8  LGAKKILSRSTA-SAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEFGFDH 67

Query: 61 PIGGLTIHCEDDIFIDLISRL 82
          P+GGLTI C +D FI++ SRL
Sbjct: 68 PMGGLTIPCPEDTFINVTSRL 87

BLAST of Cla015860 vs. TrEMBL
Match: A0A0A0K5U4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G009070 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 3.8e-34
Identity = 72/84 (85.71%), Postives = 79/84 (94.05%), Query Frame = 1

Query: 1  MGLLHLLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHH 60
          M L+HLLKRSQGVS+IPKGY AVYVGESQKKRF+IPI+YLNQP FQELLSQTEEEFGYHH
Sbjct: 1  MRLIHLLKRSQGVSSIPKGYCAVYVGESQKKRFIIPISYLNQPCFQELLSQTEEEFGYHH 60

Query: 61 PIGGLTIHCEDDIFIDLISRLNDL 85
          P+GGLTIHC+D IF +LISRLNDL
Sbjct: 61 PMGGLTIHCKDAIFTNLISRLNDL 84

BLAST of Cla015860 vs. TrEMBL
Match: A0A0A0K4K1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G009080 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.2e-32
Identity = 69/84 (82.14%), Postives = 76/84 (90.48%), Query Frame = 1

Query: 1  MGLLHLLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHH 60
          M L HLLKR+QGVSA+PKGY AVYVGESQKKRFVIPITYLN+P FQ+LL QTEEEFGY+H
Sbjct: 1  MRLQHLLKRNQGVSAVPKGYCAVYVGESQKKRFVIPITYLNRPCFQQLLCQTEEEFGYYH 60

Query: 61 PIGGLTIHCEDDIFIDLISRLNDL 85
          P+GGLTIHC DDIF DLIS +NDL
Sbjct: 61 PMGGLTIHCRDDIFTDLISNMNDL 84

BLAST of Cla015860 vs. TrEMBL
Match: A0A0A0K5V1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G009120 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 7.7e-27
Identity = 63/88 (71.59%), Postives = 71/88 (80.68%), Query Frame = 1

Query: 1  MGLLHLLKRS-----QGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEE 60
          MGL  LL+RS     Q VS +PKGY AVYVGE+QKKRFVIPITYLNQP FQ+LL+QT EE
Sbjct: 1  MGLRRLLRRSSMNGNQRVSMVPKGYCAVYVGENQKKRFVIPITYLNQPCFQDLLNQTTEE 60

Query: 61 FGYHHPIGGLTIHCEDDIFIDLISRLND 84
          F Y+HP+GGLT HC DDIF DLIS LN+
Sbjct: 61 FEYYHPMGGLTFHCSDDIFADLISHLNE 88

BLAST of Cla015860 vs. TrEMBL
Match: A0A0A0K2F9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G009050 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.2e-25
Identity = 60/87 (68.97%), Postives = 71/87 (81.61%), Query Frame = 1

Query: 1  MGLLHLLKRS-----QGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEE 60
          M +L LL+R+     +GV+ +PKGY AVYVGE QKKRFVIPITYLNQP FQ LLSQ EEE
Sbjct: 1  MRILQLLRRASTSTKEGVAVVPKGYCAVYVGEIQKKRFVIPITYLNQPCFQILLSQAEEE 60

Query: 61 FGYHHPIGGLTIHCEDDIFIDLISRLN 83
          FGY+HP+GGLTI C +DIF +LIS+LN
Sbjct: 61 FGYYHPMGGLTIQCREDIFTNLISQLN 87

BLAST of Cla015860 vs. TrEMBL
Match: K4B3T6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.0e-23
Identity = 51/77 (66.23%), Postives = 68/77 (88.31%), Query Frame = 1

Query: 6  LLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGL 65
          ++K+S  V+ +PKG+FAVYVGE+QKKRFVIPI++L+QP FQ+LLSQ EEEFG+ HP+GG+
Sbjct: 8  IIKKSSTVADVPKGHFAVYVGENQKKRFVIPISFLSQPLFQDLLSQAEEEFGFDHPMGGV 67

Query: 66 TIHCEDDIFIDLISRLN 83
          TI C +D+F+DL SRLN
Sbjct: 68 TIPCSEDVFVDLTSRLN 84

BLAST of Cla015860 vs. NCBI nr
Match: gi|778722852|ref|XP_011658582.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 5.5e-34
Identity = 72/84 (85.71%), Postives = 79/84 (94.05%), Query Frame = 1

Query: 1  MGLLHLLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHH 60
          M L+HLLKRSQGVS+IPKGY AVYVGESQKKRF+IPI+YLNQP FQELLSQTEEEFGYHH
Sbjct: 1  MRLIHLLKRSQGVSSIPKGYCAVYVGESQKKRFIIPISYLNQPCFQELLSQTEEEFGYHH 60

Query: 61 PIGGLTIHCEDDIFIDLISRLNDL 85
          P+GGLTIHC+D IF +LISRLNDL
Sbjct: 61 PMGGLTIHCKDAIFTNLISRLNDL 84

BLAST of Cla015860 vs. NCBI nr
Match: gi|700187979|gb|KGN43212.1| (hypothetical protein Csa_7G009080 [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 1.8e-32
Identity = 69/84 (82.14%), Postives = 76/84 (90.48%), Query Frame = 1

Query: 1  MGLLHLLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHH 60
          M L HLLKR+QGVSA+PKGY AVYVGESQKKRFVIPITYLN+P FQ+LL QTEEEFGY+H
Sbjct: 1  MRLQHLLKRNQGVSAVPKGYCAVYVGESQKKRFVIPITYLNRPCFQQLLCQTEEEFGYYH 60

Query: 61 PIGGLTIHCEDDIFIDLISRLNDL 85
          P+GGLTIHC DDIF DLIS +NDL
Sbjct: 61 PMGGLTIHCRDDIFTDLISNMNDL 84

BLAST of Cla015860 vs. NCBI nr
Match: gi|700187983|gb|KGN43216.1| (hypothetical protein Csa_7G009120 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-26
Identity = 63/88 (71.59%), Postives = 71/88 (80.68%), Query Frame = 1

Query: 1  MGLLHLLKRS-----QGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEE 60
          MGL  LL+RS     Q VS +PKGY AVYVGE+QKKRFVIPITYLNQP FQ+LL+QT EE
Sbjct: 1  MGLRRLLRRSSMNGNQRVSMVPKGYCAVYVGENQKKRFVIPITYLNQPCFQDLLNQTTEE 60

Query: 61 FGYHHPIGGLTIHCEDDIFIDLISRLND 84
          F Y+HP+GGLT HC DDIF DLIS LN+
Sbjct: 61 FEYYHPMGGLTFHCSDDIFADLISHLNE 88

BLAST of Cla015860 vs. NCBI nr
Match: gi|700187976|gb|KGN43209.1| (hypothetical protein Csa_7G009050 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 4.7e-25
Identity = 60/87 (68.97%), Postives = 71/87 (81.61%), Query Frame = 1

Query: 1  MGLLHLLKRS-----QGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEE 60
          M +L LL+R+     +GV+ +PKGY AVYVGE QKKRFVIPITYLNQP FQ LLSQ EEE
Sbjct: 1  MRILQLLRRASTSTKEGVAVVPKGYCAVYVGEIQKKRFVIPITYLNQPCFQILLSQAEEE 60

Query: 61 FGYHHPIGGLTIHCEDDIFIDLISRLN 83
          FGY+HP+GGLTI C +DIF +LIS+LN
Sbjct: 61 FGYYHPMGGLTIQCREDIFTNLISQLN 87

BLAST of Cla015860 vs. NCBI nr
Match: gi|764590399|ref|XP_011465140.1| (PREDICTED: indole-3-acetic acid-induced protein ARG7-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 117.1 bits (292), Expect = 1.5e-23
Identity = 53/69 (76.81%), Postives = 61/69 (88.41%), Query Frame = 1

Query: 14 SAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDI 73
          S IPKGYFAVYVGESQKKRFV+PI+YLNQP F +LLSQ EEEFGYHHP+GG+TI C +D 
Sbjct: 14 SDIPKGYFAVYVGESQKKRFVVPISYLNQPLFLDLLSQAEEEFGYHHPMGGITIPCSEDT 73

Query: 74 FIDLISRLN 83
          F+DL SRL+
Sbjct: 74 FLDLTSRLS 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
SAU24_ARATH4.4e-2362.20Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana GN=SAUR24 PE=2 SV=1[more]
SAU22_ARATH1.7e-2260.98Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana GN=SAUR22 PE=2 SV=1[more]
SAU23_ARATH2.8e-2262.34Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana GN=SAUR23 PE=2 SV=1[more]
SAU20_ARATH4.8e-2261.73Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana GN=SAUR20 PE=2 SV=1[more]
SAU21_ARATH1.1e-2160.49Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana GN=SAUR21 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0K5U4_CUCSA3.8e-3485.71Uncharacterized protein OS=Cucumis sativus GN=Csa_7G009070 PE=4 SV=1[more]
A0A0A0K4K1_CUCSA1.2e-3282.14Uncharacterized protein OS=Cucumis sativus GN=Csa_7G009080 PE=4 SV=1[more]
A0A0A0K5V1_CUCSA7.7e-2771.59Uncharacterized protein OS=Cucumis sativus GN=Csa_7G009120 PE=4 SV=1[more]
A0A0A0K2F9_CUCSA3.2e-2568.97Uncharacterized protein OS=Cucumis sativus GN=Csa_7G009050 PE=4 SV=1[more]
K4B3T6_SOLLC1.0e-2366.23Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778722852|ref|XP_011658582.1|5.5e-3485.71PREDICTED: auxin-induced protein 15A-like [Cucumis sativus][more]
gi|700187979|gb|KGN43212.1|1.8e-3282.14hypothetical protein Csa_7G009080 [Cucumis sativus][more]
gi|700187983|gb|KGN43216.1|1.1e-2671.59hypothetical protein Csa_7G009120 [Cucumis sativus][more]
gi|700187976|gb|KGN43209.1|4.7e-2568.97hypothetical protein Csa_7G009050 [Cucumis sativus][more]
gi|764590399|ref|XP_011465140.1|1.5e-2376.81PREDICTED: indole-3-acetic acid-induced protein ARG7-like [Fragaria vesca subsp.... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003676SAUR_fam
Vocabulary: Biological Process
TermDefinition
GO:0009733response to auxin
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009733 response to auxin
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla015860Cla015860.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003676Small auxin-up RNAPFAMPF02519Auxin_induciblecoord: 14..81
score: 1.5
NoneNo IPR availablePANTHERPTHR31929FAMILY NOT NAMEDcoord: 4..84
score: 5.7

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla015860Cucsa.381980Cucumber (Gy14) v1cgywmB688
Cla015860CmaCh20G007900Cucurbita maxima (Rimu)cmawmB526
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla015860Melon (DHL92) v3.5.1mewmB239
Cla015860Melon (DHL92) v3.5.1mewmB327
Cla015860Watermelon (Charleston Gray)wcgwmB101
Cla015860Watermelon (Charleston Gray)wcgwmB198
Cla015860Watermelon (Charleston Gray)wcgwmB422
Cla015860Cucumber (Chinese Long) v2cuwmB149
Cla015860Cucumber (Chinese Long) v2cuwmB153
Cla015860Cucumber (Chinese Long) v2cuwmB604
Cla015860Cucurbita pepo (Zucchini)cpewmB115
Cla015860Cucurbita pepo (Zucchini)cpewmB268
Cla015860Cucurbita pepo (Zucchini)cpewmB304
Cla015860Cucurbita pepo (Zucchini)cpewmB674
Cla015860Cucurbita pepo (Zucchini)cpewmB748
Cla015860Cucurbita pepo (Zucchini)cpewmB808
Cla015860Bottle gourd (USVL1VR-Ls)lsiwmB079
Cla015860Bottle gourd (USVL1VR-Ls)lsiwmB106
Cla015860Cucumber (Gy14) v2cgybwmB141
Cla015860Cucumber (Gy14) v2cgybwmB144
Cla015860Cucumber (Gy14) v2cgybwmB566
Cla015860Melon (DHL92) v3.6.1medwmB110
Cla015860Melon (DHL92) v3.6.1medwmB231
Cla015860Melon (DHL92) v3.6.1medwmB324
Cla015860Silver-seed gourdcarwmB0137
Cla015860Silver-seed gourdcarwmB0305
Cla015860Silver-seed gourdcarwmB0985
Cla015860Silver-seed gourdcarwmB1025
Cla015860Cucumber (Chinese Long) v3cucwmB160
Cla015860Cucumber (Chinese Long) v3cucwmB163
Cla015860Cucumber (Chinese Long) v3cucwmB634
Cla015860Watermelon (97103) v2wmwmbB315
Cla015860Watermelon (97103) v2wmwmbB317
Cla015860Watermelon (97103) v2wmwmbB349
Cla015860Wax gourdwgowmB272
Cla015860Wax gourdwgowmB343
Cla015860Wax gourdwgowmB383
Cla015860Watermelon (97103) v1wmwmB073
Cla015860Watermelon (97103) v1wmwmB160
Cla015860Cucumber (Gy14) v1cgywmB296
Cla015860Cucumber (Gy14) v1cgywmB321
Cla015860Cucurbita maxima (Rimu)cmawmB121
Cla015860Cucurbita maxima (Rimu)cmawmB503
Cla015860Cucurbita maxima (Rimu)cmawmB586
Cla015860Cucurbita moschata (Rifu)cmowmB117
Cla015860Cucurbita moschata (Rifu)cmowmB158
Cla015860Cucurbita moschata (Rifu)cmowmB496
Cla015860Cucurbita moschata (Rifu)cmowmB514
Cla015860Cucurbita moschata (Rifu)cmowmB516
Cla015860Cucurbita moschata (Rifu)cmowmB580