Cla015726 (gene) Watermelon (97103) v1

NameCla015726
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionPentatricopeptide repeat-containing protein (AHRD V1 ***- D7LN61_ARALL); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
LocationChr2 : 3008795 .. 3009727 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTTATAGCAACTCCTCCGTCGCCGACAATTCTCAGTCCGCCGTTCAATTTACCGAGCTATGGCGGGAAAGCATCCTGCCTACGACTAGGCAGCGCGGAGGGATATCGGAGAGTGACTATGAGAGGCGGAAGTGAAAACCGGAAGCCATTGCAGAAGGGGAGGAACCTCAGCATCGAAGCAATTCAAGCGGTGCAGTCGTTGAAGCGAGCCAAGAAAGATTTACAACAATTGGACCGAGTGCATGATGCCAAACTTAGGCGTTTATTGAAGTTCGATATGATGGCTGTCCTTCGCGAGCTCCTTCGCCAGAACGAGTGTTCTCTGGCTCTTAAGGTGATGCCTCTGCACTTGAATTTTATGTTCATCTGTATCTTTGATTAGTTATCGGACTTATTCGATATTGCATGATCGGTATTGATTTTTAGAGGTGTCCACAGCAATGGCGAGACAGAGATTTTTGCTTATTGTAATTCCTTCAATACTCCTTGCTGATATTTTGTACGATTTATGTGTTAGGTTTTCGAAGATGTTAGAAATGAACACTGGTACAAGCCTCAGGTCTCGCTGTATGCTGATATTATTACAGTATTGGCTAGCAATGGATTGTTCGAACGAGTAGAAATTATTCATTCGTACTTGAAAGCAGAAGCTGACTTAGCACCTGAAATTGACGGGTTTAATGCTCTTTTGAAGGCCTTGGTTTGTCATAACTTAGGTGAACTTGCGATGGAGTCGTATTACTTGATGAAAGAAGTAGGTTGTGAGCCAGATAAGGCTTCCTTCAGGATTCTCATAAAAGGATTGGAATCAACGGGAGAGGCAGTTGATTTAAGAACTGTGAAGCAGGATGCACAAAAGCTTTATGGTGAATCACTTGAGTTTCTAGAGGAAGAAGAAGAGACAGCTACAGCCATATCTATGCACTGA

mRNA sequence

ATGAGTTTTATAGCAACTCCTCCGTCGCCGACAATTCTCAGTCCGCCGTTCAATTTACCGAGCTATGGCGGGAAAGCATCCTGCCTACGACTAGGCAGCGCGGAGGGATATCGGAGAGTGACTATGAGAGGCGGAAGTGAAAACCGGAAGCCATTGCAGAAGGGGAGGAACCTCAGCATCGAAGCAATTCAAGCGGTGCAGTCGTTGAAGCGAGCCAAGAAAGATTTACAACAATTGGACCGAGTGCATGATGCCAAACTTAGGCGTTTATTGAAGTTCGATATGATGGCTGTCCTTCGCGAGCTCCTTCGCCAGAACGAGTGTTCTCTGGCTCTTAAGGTTTTCGAAGATGTTAGAAATGAACACTGGTACAAGCCTCAGGTCTCGCTGTATGCTGATATTATTACAGTATTGGCTAGCAATGGATTGTTCGAACGAGTAGAAATTATTCATTCGTACTTGAAAGCAGAAGCTGACTTAGCACCTGAAATTGACGGGTTTAATGCTCTTTTGAAGGCCTTGGTTTGTCATAACTTAGGTGAACTTGCGATGGAGTCGTATTACTTGATGAAAGAAGTAGGTTGTGAGCCAGATAAGGCTTCCTTCAGGATTCTCATAAAAGGATTGGAATCAACGGGAGAGGCAGTTGATTTAAGAACTGTGAAGCAGGATGCACAAAAGCTTTATGGTGAATCACTTGAGTTTCTAGAGGAAGAAGAAGAGACAGCTACAGCCATATCTATGCACTGA

Coding sequence (CDS)

ATGAGTTTTATAGCAACTCCTCCGTCGCCGACAATTCTCAGTCCGCCGTTCAATTTACCGAGCTATGGCGGGAAAGCATCCTGCCTACGACTAGGCAGCGCGGAGGGATATCGGAGAGTGACTATGAGAGGCGGAAGTGAAAACCGGAAGCCATTGCAGAAGGGGAGGAACCTCAGCATCGAAGCAATTCAAGCGGTGCAGTCGTTGAAGCGAGCCAAGAAAGATTTACAACAATTGGACCGAGTGCATGATGCCAAACTTAGGCGTTTATTGAAGTTCGATATGATGGCTGTCCTTCGCGAGCTCCTTCGCCAGAACGAGTGTTCTCTGGCTCTTAAGGTTTTCGAAGATGTTAGAAATGAACACTGGTACAAGCCTCAGGTCTCGCTGTATGCTGATATTATTACAGTATTGGCTAGCAATGGATTGTTCGAACGAGTAGAAATTATTCATTCGTACTTGAAAGCAGAAGCTGACTTAGCACCTGAAATTGACGGGTTTAATGCTCTTTTGAAGGCCTTGGTTTGTCATAACTTAGGTGAACTTGCGATGGAGTCGTATTACTTGATGAAAGAAGTAGGTTGTGAGCCAGATAAGGCTTCCTTCAGGATTCTCATAAAAGGATTGGAATCAACGGGAGAGGCAGTTGATTTAAGAACTGTGAAGCAGGATGCACAAAAGCTTTATGGTGAATCACTTGAGTTTCTAGAGGAAGAAGAAGAGACAGCTACAGCCATATCTATGCACTGA

Protein sequence

MSFIATPPSPTILSPPFNLPSYGGKASCLRLGSAEGYRRVTMRGGSENRKPLQKGRNLSIEAIQAVQSLKRAKKDLQQLDRVHDAKLRRLLKFDMMAVLRELLRQNECSLALKVFEDVRNEHWYKPQVSLYADIITVLASNGLFERVEIIHSYLKAEADLAPEIDGFNALLKALVCHNLGELAMESYYLMKEVGCEPDKASFRILIKGLESTGEAVDLRTVKQDAQKLYGESLEFLEEEEETATAISMH
BLAST of Cla015726 vs. Swiss-Prot
Match: PP266_ARATH (Pentatricopeptide repeat-containing protein At3g46870 OS=Arabidopsis thaliana GN=At3g46870 PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.3e-19
Identity = 63/193 (32.64%), Postives = 103/193 (53.37%), Query Frame = 1

Query: 49  RKPLQKGRNL-SIEAIQAVQSLKRAKKDLQQLDRVHDAKLRRLLKFDMMAVLRELLRQNE 108
           R PL +G+ L   EA+  +  LKR K+D ++LD+     + RLLK DM+AV+ EL RQ E
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEE 122

Query: 109 CSLALKVFEDVRNEHWYKPQVSLYADIITVLASNGLFERVEIIHSYLKAEADLAPEIDGF 168
            +LA+K+FE ++ + WY+P V +Y D+I  LA +   +    +   +K E +L P+   +
Sbjct: 123 TALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKE-NLFPDSQTY 182

Query: 169 NALLKALVCHNLGELAMESYYLMKEVGCEPDKASFRILIKGLESTGEAVDLRTVKQDAQK 228
             +++  +       AM  Y  M +    P++  FR+L+KGL      +    VK+D ++
Sbjct: 183 TEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGL--LPHPLLRNKVKKDFEE 242

Query: 229 LYGESLEFLEEEE 241
           L+ E   +   EE
Sbjct: 243 LFPEKHAYDPPEE 252

BLAST of Cla015726 vs. Swiss-Prot
Match: PPR89_ARATH (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-15
Identity = 57/172 (33.14%), Postives = 89/172 (51.74%), Query Frame = 1

Query: 58  LSIEAIQAVQSLKRAKKDLQQLDRVHDAKLRRLLKFDMMAVLRELLRQNECSLALKVFED 117
           +S E + A + LKR +    +LDR   + + RLLK D+++VL E  RQN+  L +K++E 
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 118 VRNEHWYKPQVSLYADIITVLASNGLFERVEIIHSYLKAEADLAPEIDGFNALLKALVCH 177
           VR E WY+P +  Y D++ +LA N   +  + +   LK E  L  +   F  L++  + +
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQ-HTFGDLVRGFLDN 120

Query: 178 NLGELAMESYYLMKEVGCEPDKASFRILIKGLESTGEAVDLRTVKQDAQKLY 230
            L   AM  Y  M+E    P    FR+++KGL    E  +   VK D  +L+
Sbjct: 121 ELPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELRE--KVKDDFLELF 169

BLAST of Cla015726 vs. Swiss-Prot
Match: PP186_ARATH (Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.3e-08
Identity = 35/119 (29.41%), Postives = 62/119 (52.10%), Query Frame = 1

Query: 110 LALKVFEDVRNEHWYKPQVSLYADIITVLASNGLFERVEIIHSYLKAEADLAPEIDGFNA 169
           ++ K++ ++R+ H  KP +  Y  ++   A  GL E+ E I   L+ E  L P++  +NA
Sbjct: 282 MSWKLYCEMRS-HQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQ-EDGLEPDVYVYNA 341

Query: 170 LLKALVCHNLGELAMESYYLMKEVGCEPDKASFRILIKGLESTGEAVDLRTVKQDAQKL 229
           L+++         A E + LM+ +GCEPD+AS+ I++      G   D   V ++ ++L
Sbjct: 342 LMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRL 398

BLAST of Cla015726 vs. Swiss-Prot
Match: PP279_ARATH (Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana GN=At3g53170 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.4e-07
Identity = 32/113 (28.32%), Postives = 56/113 (49.56%), Query Frame = 1

Query: 95  MMAVLRELLRQNECSLALKVFEDVRNEHWYKPQVSLYADIITVLASNGLFERVEIIHSYL 154
           ++  L E +++N    ALK+F  +R +HWY+P+   Y  +  VL +    ++  ++   +
Sbjct: 61  VLEALDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVM 120

Query: 155 KAEADLAPEIDGFNALLKALVCHNLGELAMESYYLMKEVG-CEPDKASFRILI 207
            +E  L P ID + +L+       L + A  +   MK V  C+PD  +F +LI
Sbjct: 121 LSEG-LKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLI 172

BLAST of Cla015726 vs. TrEMBL
Match: A0A0A0K6A9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G027870 PE=4 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 2.6e-115
Identity = 217/248 (87.50%), Postives = 229/248 (92.34%), Query Frame = 1

Query: 1   MSFIATPPSPTILSPPFNLPSYGGKASCLRLGSAEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSF+ATP SPTI SP    PS  G A CL+LG AEGY RVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATPSSPTIFSPLLKFPSSVGTACCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDLQQLDRVHDAKLRRLLKFDMMAVLRELLRQNECSLALKVFEDVRN 120
           EAIQAVQSLKR KKDLQQLDRV+D+K+RRLLKFDM+AVLRELLRQNECSLALKVFEDVR 
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRK 120

Query: 121 EHWYKPQVSLYADIITVLASNGLFERVEIIHSYLKAEADLAPEIDGFNALLKALVCHNLG 180
           EHWYKPQVSLYADIITVLASNGLFERV+II SY+KAEADLAPEIDGFNALLKALV HNLG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGFNALLKALVSHNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKASFRILIKGLESTGEAVDLRTVKQDAQKLYGESLEFLEEEE 240
           ELAMESYYLMK+VGCEPDKASFRI+IKGLES GEAVDLRTVKQDAQ+LYGESLEFLEEEE
Sbjct: 181 ELAMESYYLMKDVGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQRLYGESLEFLEEEE 240

Query: 241 ETATAISM 249
           E ATA S+
Sbjct: 241 EGATATSI 248

BLAST of Cla015726 vs. TrEMBL
Match: W9QLL7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013743 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 2.2e-69
Identity = 142/221 (64.25%), Postives = 172/221 (77.83%), Query Frame = 1

Query: 29  LRLGSAEGYRR-VTMRGGSENRKPLQKGRNLSIEAIQAVQSLKRAKKDLQQLDRVHDAKL 88
           LRL   + +R  VTMR  S N +PLQKGRNLSIEAIQ VQ+LKR +KD + L++  D K 
Sbjct: 20  LRLARPQKWRSIVTMRDRSNNPRPLQKGRNLSIEAIQTVQALKRTQKDHRSLEKFFDLKF 79

Query: 89  RRLLKFDMMAVLRELLRQNECSLALKVFEDVRNEHWYKPQVSLYADIITVLASNGLFERV 148
           RRLLKFDMMAVLRELLRQNEC LALKVFED+R E+WYKPQVSLYAD++ V  +NG  E+V
Sbjct: 80  RRLLKFDMMAVLRELLRQNECLLALKVFEDIRKEYWYKPQVSLYADMVGVFGNNGFLEQV 139

Query: 149 EIIHSYL-KAEADLAPEIDGFNALLKALVCHNLGELAMESYYLMKEVGCEPDKASFRILI 208
           E++  YL K EA+L PEI+GFNALL+ALV  N+ ELAME Y LMK+VGC+PD+++FRILI
Sbjct: 140 ELVGLYLKKEEANLRPEIEGFNALLRALVSLNIAELAMECYCLMKQVGCDPDRSTFRILI 199

Query: 209 KGLESTGEAVDLRTVKQDAQKLYGESLEFLEEEEETATAIS 248
            GLES GE      V+ DAQK YGESLEFL+E E+ A  ++
Sbjct: 200 NGLESMGETGASAIVRLDAQKFYGESLEFLDEIEDLAPKLA 240

BLAST of Cla015726 vs. TrEMBL
Match: A0A0D2RM85_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G216000 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 2.9e-69
Identity = 144/226 (63.72%), Postives = 173/226 (76.55%), Query Frame = 1

Query: 27  SCLRLGSAEGYRRVTMRGGSENRKPLQKGRNLSIEAIQAVQSLKRAKKD-----LQQLDR 86
           S LRL        +TM+  S+NRKPLQKGRNLSIEAIQAVQSLKRA ++     L +L+R
Sbjct: 21  SSLRLKLNPKAMVITMKDRSKNRKPLQKGRNLSIEAIQAVQSLKRANRNVSNTSLSELER 80

Query: 87  VHDAKLRRLLKFDMMAVLRELLRQNECSLALKVFEDVRNEHWYKPQVSLYADIITVLASN 146
           V D+K RRLLKFDM+AVLRELLRQNEC LALKVF+D+R E WYKP++ LY D+I+VLASN
Sbjct: 81  VFDSKFRRLLKFDMVAVLRELLRQNECLLALKVFDDIRKEVWYKPRLLLYTDMISVLASN 140

Query: 147 GLFERVEIIHSYLKAEADLAPEIDGFNALLKALVCHNLGELAMESYYLMKEVGCEPDKAS 206
           GLF+ VE+I+SYLK E  L P+I GFNALL AL+   L  L M+ Y LMK V CEPD++S
Sbjct: 141 GLFKEVELIYSYLKTENSLDPDIVGFNALLNALISFKLTHLVMDCYGLMKAVDCEPDRSS 200

Query: 207 FRILIKGLESTGEAVDLRTVKQDAQKLYGESLEFLEEEEETATAIS 248
           FRILI GLES GE      ++QDAQK+YGESLEFLEEEEE +  ++
Sbjct: 201 FRILINGLESIGETGLSGLLRQDAQKIYGESLEFLEEEEEVSAIVT 246

BLAST of Cla015726 vs. TrEMBL
Match: A0A061E3K5_THECC (Vacuolar sorting protein 9 domain OS=Theobroma cacao GN=TCM_007598 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 5.4e-68
Identity = 136/211 (64.45%), Postives = 165/211 (78.20%), Query Frame = 1

Query: 40  VTMRGGSENRKPLQKGRNLSIEAIQAVQSLKRAKKD-----LQQLDRVHDAKLRRLLKFD 99
           +TM+  S+NRKPLQ+GRNLSIEAIQAVQ+LKRA ++     L +L+RV D K RRLLKFD
Sbjct: 34  ITMKDRSKNRKPLQRGRNLSIEAIQAVQALKRANRNTYNNPLPELERVFDFKFRRLLKFD 93

Query: 100 MMAVLRELLRQNECSLALKVFEDVRNEHWYKPQVSLYADIITVLASNGLFERVEIIHSYL 159
           MMAVLRELLRQNEC LALKVF+++R E WYKPQV LYAD+I V ASNGLF+  E+++SYL
Sbjct: 94  MMAVLRELLRQNECLLALKVFDEIRKEVWYKPQVLLYADMIAVFASNGLFKEAELLYSYL 153

Query: 160 KAEADLAPEIDGFNALLKALVCHNLGELAMESYYLMKEVGCEPDKASFRILIKGLESTGE 219
           K E+ L   I+GFNAL  AL+   L +L M+ Y LMK +GCEPD++SFRILI GLESTGE
Sbjct: 154 KTESKLDQNIEGFNALFNALINFKLTQLVMDCYGLMKAIGCEPDRSSFRILINGLESTGE 213

Query: 220 AVDLRTVKQDAQKLYGESLEFLEEEEETATA 246
                 ++QDAQK YGESLEFL+EEEE   +
Sbjct: 214 TGSSALLRQDAQKYYGESLEFLKEEEEVTAS 244

BLAST of Cla015726 vs. TrEMBL
Match: M5VMD1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016058mg PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 7.0e-68
Identity = 137/204 (67.16%), Postives = 162/204 (79.41%), Query Frame = 1

Query: 40  VTMRGGSENRKPLQKGRNLSIEAIQAVQSLKRAKKDLQQLDRVHDAKLRRLLKFDMMAVL 99
           VTMR  S N +PLQKGR+LSIEAIQ VQ+LKRAKK+   LD+   +K RRLLK DMMAVL
Sbjct: 11  VTMRDRSNNPRPLQKGRHLSIEAIQTVQALKRAKKNQSFLDQAFGSKFRRLLKLDMMAVL 70

Query: 100 RELLRQNECSLALKVFEDVRNEHWYKPQVSLYADIITVLASNGLFERVEIIHSYLKAEAD 159
           R+LLRQNEC LALKVFED+R EHWY+PQVSLYAD+I V+ASN LFE+VE++   LK E +
Sbjct: 71  RDLLRQNECFLALKVFEDIRKEHWYRPQVSLYADMIKVMASNELFEQVELLCLCLKKERN 130

Query: 160 LAPEIDGFNALLKALVCHNLGELAMESYYLMKEVGCEPDKASFRILIKGLESTGEAVDLR 219
           L PE++ FNALL  L+   + +LAME +YLMKEVGCEPD++SFRILI GLES GE     
Sbjct: 131 LHPELEAFNALLTTLISFKIPKLAMECFYLMKEVGCEPDRSSFRILINGLESMGETGLSG 190

Query: 220 TVKQDAQKLYGESLEFLEEEEETA 244
            ++QDAQK YGESLEFLEE EE A
Sbjct: 191 ILRQDAQKYYGESLEFLEENEEMA 214

BLAST of Cla015726 vs. NCBI nr
Match: gi|659100627|ref|XP_008451190.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Cucumis melo])

HSP 1 Score: 423.7 bits (1088), Expect = 2.2e-115
Identity = 218/249 (87.55%), Postives = 230/249 (92.37%), Query Frame = 1

Query: 1   MSFIATPPSPTILSPPFNLPSYGGKASCLRLGSAEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSF+ T PSPTILSPP  LPS   K  CL+LG AEGY RVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLLTLPSPTILSPPLKLPSSVRKPCCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDLQQLDRVHDAKLRRLLKFDMMAVLRELLRQNECSLALKVFEDVRN 120
           EAIQAVQSLKR KKDLQQLDRV+D+K+RRLLKFDM+AVLRELLRQNECSLALKVFEDVRN
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 120

Query: 121 EHWYKPQVSLYADIITVLASNGLFERVEIIHSYLKAEADLAPEIDGFNALLKALVCHNLG 180
           EHWYKPQVSLYADIITVLASNGLFERV+II SY+KAE DLAPEIDGFNALLKALV HNLG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAETDLAPEIDGFNALLKALVGHNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKASFRILIKGLESTGEAVDLRTVKQDAQKLYGESLEFLEEEE 240
           +LAMESYYLMKEVGCEP+KASFRI+IKGLE  GEAVDLRTVKQDAQKLYGESLEFLEE E
Sbjct: 181 KLAMESYYLMKEVGCEPNKASFRIVIKGLELKGEAVDLRTVKQDAQKLYGESLEFLEEAE 240

Query: 241 ETATAISMH 250
           E ATAIS+H
Sbjct: 241 EGATAISIH 249

BLAST of Cla015726 vs. NCBI nr
Match: gi|449454430|ref|XP_004144958.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Cucumis sativus])

HSP 1 Score: 422.9 bits (1086), Expect = 3.8e-115
Identity = 217/248 (87.50%), Postives = 229/248 (92.34%), Query Frame = 1

Query: 1   MSFIATPPSPTILSPPFNLPSYGGKASCLRLGSAEGYRRVTMRGGSENRKPLQKGRNLSI 60
           MSF+ATP SPTI SP    PS  G A CL+LG AEGY RVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATPSSPTIFSPLLKFPSSVGTACCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 61  EAIQAVQSLKRAKKDLQQLDRVHDAKLRRLLKFDMMAVLRELLRQNECSLALKVFEDVRN 120
           EAIQAVQSLKR KKDLQQLDRV+D+K+RRLLKFDM+AVLRELLRQNECSLALKVFEDVR 
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRK 120

Query: 121 EHWYKPQVSLYADIITVLASNGLFERVEIIHSYLKAEADLAPEIDGFNALLKALVCHNLG 180
           EHWYKPQVSLYADIITVLASNGLFERV+II SY+KAEADLAPEIDGFNALLKALV HNLG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGFNALLKALVSHNLG 180

Query: 181 ELAMESYYLMKEVGCEPDKASFRILIKGLESTGEAVDLRTVKQDAQKLYGESLEFLEEEE 240
           ELAMESYYLMK+VGCEPDKASFRI+IKGLES GEAVDLRTVKQDAQ+LYGESLEFLEEEE
Sbjct: 181 ELAMESYYLMKDVGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQRLYGESLEFLEEEE 240

Query: 241 ETATAISM 249
           E ATA S+
Sbjct: 241 EGATATSI 248

BLAST of Cla015726 vs. NCBI nr
Match: gi|657980994|ref|XP_008382506.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Malus domestica])

HSP 1 Score: 275.8 bits (704), Expect = 7.5e-71
Identity = 139/206 (67.48%), Postives = 166/206 (80.58%), Query Frame = 1

Query: 40  VTMRGGSENRKPLQKGRNLSIEAIQAVQSLKRAKKDLQQLDRVHDAKLRRLLKFDMMAVL 99
           +TMR  S N +PLQKGR LSIEAIQ VQ+LKRA+KD   L +V D+K RRLLKFDMMAVL
Sbjct: 43  ITMRDRSNNPRPLQKGRFLSIEAIQTVQALKRAQKDQSILSQVFDSKFRRLLKFDMMAVL 102

Query: 100 RELLRQNECSLALKVFEDVRNEHWYKPQVSLYADIITVLASNGLFERVEIIHSYLKAEAD 159
           R+LLRQNEC LALKVFED+R EHWY+PQVSLY+D+I V ASNGLFE+VE++   LK E +
Sbjct: 103 RDLLRQNECVLALKVFEDIRKEHWYRPQVSLYSDMIRVTASNGLFEQVELLFLCLKKETN 162

Query: 160 LAPEIDGFNALLKALVCHNLGELAMESYYLMKEVGCEPDKASFRILIKGLESTGEAVDLR 219
           L PEI+ FNAL+  L+  NL +LA+E YYLMKEVGCEPD++SFRIL+ GLES GE     
Sbjct: 163 LQPEIEAFNALMTTLISFNLPKLAIECYYLMKEVGCEPDRSSFRILVNGLESMGETGSSG 222

Query: 220 TVKQDAQKLYGESLEFLEEEEETATA 246
            V+QDAQ++YGESLEFLEE EE A +
Sbjct: 223 IVRQDAQQIYGESLEFLEENEEMAVS 248

BLAST of Cla015726 vs. NCBI nr
Match: gi|703077933|ref|XP_010090721.1| (hypothetical protein L484_013743 [Morus notabilis])

HSP 1 Score: 270.4 bits (690), Expect = 3.1e-69
Identity = 142/221 (64.25%), Postives = 172/221 (77.83%), Query Frame = 1

Query: 29  LRLGSAEGYRR-VTMRGGSENRKPLQKGRNLSIEAIQAVQSLKRAKKDLQQLDRVHDAKL 88
           LRL   + +R  VTMR  S N +PLQKGRNLSIEAIQ VQ+LKR +KD + L++  D K 
Sbjct: 20  LRLARPQKWRSIVTMRDRSNNPRPLQKGRNLSIEAIQTVQALKRTQKDHRSLEKFFDLKF 79

Query: 89  RRLLKFDMMAVLRELLRQNECSLALKVFEDVRNEHWYKPQVSLYADIITVLASNGLFERV 148
           RRLLKFDMMAVLRELLRQNEC LALKVFED+R E+WYKPQVSLYAD++ V  +NG  E+V
Sbjct: 80  RRLLKFDMMAVLRELLRQNECLLALKVFEDIRKEYWYKPQVSLYADMVGVFGNNGFLEQV 139

Query: 149 EIIHSYL-KAEADLAPEIDGFNALLKALVCHNLGELAMESYYLMKEVGCEPDKASFRILI 208
           E++  YL K EA+L PEI+GFNALL+ALV  N+ ELAME Y LMK+VGC+PD+++FRILI
Sbjct: 140 ELVGLYLKKEEANLRPEIEGFNALLRALVSLNIAELAMECYCLMKQVGCDPDRSTFRILI 199

Query: 209 KGLESTGEAVDLRTVKQDAQKLYGESLEFLEEEEETATAIS 248
            GLES GE      V+ DAQK YGESLEFL+E E+ A  ++
Sbjct: 200 NGLESMGETGASAIVRLDAQKFYGESLEFLDEIEDLAPKLA 240

BLAST of Cla015726 vs. NCBI nr
Match: gi|645260439|ref|XP_008235830.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Prunus mume])

HSP 1 Score: 270.0 bits (689), Expect = 4.1e-69
Identity = 138/204 (67.65%), Postives = 164/204 (80.39%), Query Frame = 1

Query: 40  VTMRGGSENRKPLQKGRNLSIEAIQAVQSLKRAKKDLQQLDRVHDAKLRRLLKFDMMAVL 99
           VTMR  S N +PLQKGR+LSIEAIQ VQ+LKRA K+   LD+  D+K RRLLK DMMAVL
Sbjct: 43  VTMRDRSNNPRPLQKGRHLSIEAIQTVQALKRANKNQSFLDQAFDSKFRRLLKLDMMAVL 102

Query: 100 RELLRQNECSLALKVFEDVRNEHWYKPQVSLYADIITVLASNGLFERVEIIHSYLKAEAD 159
           R+LLRQNEC LALKVFED+R EHWY+PQVSLYAD+I V+ASN LFE+VE++   LK E +
Sbjct: 103 RDLLRQNECFLALKVFEDIRKEHWYRPQVSLYADMIKVMASNELFEQVELLCLCLKKETN 162

Query: 160 LAPEIDGFNALLKALVCHNLGELAMESYYLMKEVGCEPDKASFRILIKGLESTGEAVDLR 219
           L PE++ FNALL + +  N+ +LAME YYLMKEVGCEPD++SFRILI GLES GE     
Sbjct: 163 LHPELEAFNALLTSFISFNIPKLAMECYYLMKEVGCEPDRSSFRILINGLESMGETGLSG 222

Query: 220 TVKQDAQKLYGESLEFLEEEEETA 244
            ++QDA+K YGESLEFLEE EETA
Sbjct: 223 ILRQDARKYYGESLEFLEENEETA 246

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PP266_ARATH1.3e-1932.64Pentatricopeptide repeat-containing protein At3g46870 OS=Arabidopsis thaliana GN... [more]
PPR89_ARATH1.2e-1533.14Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana GN... [more]
PP186_ARATH5.3e-0829.41Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana GN... [more]
PP279_ARATH3.4e-0728.32Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana GN... [more]
Match NameE-valueIdentityDescription
A0A0A0K6A9_CUCSA2.6e-11587.50Uncharacterized protein OS=Cucumis sativus GN=Csa_7G027870 PE=4 SV=1[more]
W9QLL7_9ROSA2.2e-6964.25Uncharacterized protein OS=Morus notabilis GN=L484_013743 PE=4 SV=1[more]
A0A0D2RM85_GOSRA2.9e-6963.72Uncharacterized protein OS=Gossypium raimondii GN=B456_005G216000 PE=4 SV=1[more]
A0A061E3K5_THECC5.4e-6864.45Vacuolar sorting protein 9 domain OS=Theobroma cacao GN=TCM_007598 PE=4 SV=1[more]
M5VMD1_PRUPE7.0e-6867.16Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016058mg PE=4 S... [more]
Match NameE-valueIdentityDescription
gi|659100627|ref|XP_008451190.1|2.2e-11587.55PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Cucumis m... [more]
gi|449454430|ref|XP_004144958.1|3.8e-11587.50PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Cucumis s... [more]
gi|657980994|ref|XP_008382506.1|7.5e-7167.48PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Malus dom... [more]
gi|703077933|ref|XP_010090721.1|3.1e-6964.25hypothetical protein L484_013743 [Morus notabilis][more]
gi|645260439|ref|XP_008235830.1|4.1e-6967.65PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Prunus mu... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU47392watermelon EST collection version 2.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla015726Cla015726.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU47392WMU47392transcribed_cluster


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 166..209
score: 3.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 167..198
score: 0.
NoneNo IPR availableunknownCoilCoilcoord: 69..89
scor
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 56..214
score: 1.3
NoneNo IPR availablePANTHERPTHR24015:SF525SUBFAMILY NOT NAMEDcoord: 56..214
score: 1.3

The following gene(s) are paralogous to this gene:

None