Cla015653 (gene) Watermelon (97103) v1

Overview
NameCla015653
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr2 : 2384859 .. 2385035 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACTGATGAAGTTGACGATGTCAAGCGCCACGGTTTTGGAGGAGGGCAGGCTATATCCGTTGCCAATAATGTATGCCTCAACCGTTGCGCCCACGGTTGTTGCAGCTGCGTCCGCGGCCGTTGCATCAGGTGCTGTATTGATGAAGAGCCCCAAGCTATGCCCAGCAACTAA

mRNA sequence

ATGGAAACTGATGAAGTTGACGATGTCAAGCGCCACGGTTTTGGAGGAGGGCAGGCTATATCCGTTGCCAATAATGTATGCCTCAACCGTTGCGCCCACGGTTGTTGCAGCTGCGTCCGCGGCCGTTGCATCAGGTGCTGTATTGATGAAGAGCCCCAAGCTATGCCCAGCAACTAA

Coding sequence (CDS)

ATGGAAACTGATGAAGTTGACGATGTCAAGCGCCACGGTTTTGGAGGAGGGCAGGCTATATCCGTTGCCAATAATGTATGCCTCAACCGTTGCGCCCACGGTTGTTGCAGCTGCGTCCGCGGCCGTTGCATCAGGTGCTGTATTGATGAAGAGCCCCAAGCTATGCCCAGCAACTAA

Protein sequence

METDEVDDVKRHGFGGGQAISVANNVCLNRCAHGCCSCVRGRCIRCCIDEEPQAMPSN
Homology
[Close]
BLAST of Cla015653 vs. TrEMBL
Match: A0A0A0K5A1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037560 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.7e-10
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 1 

Query: 1   METDEVDDVKRHGFGGGQAISVANNVCLNRCAHGCCSCVRGRCIRCC--------IDEEP 59
           MET EVD+V+RH +GG  + ++A   CL+ C  GCC C RGRCIRCC        +D +P
Sbjct: 37  METGEVDNVERHSYGGAHSRNLAE--CLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKP 96

[Close]
BLAST of Cla015653 vs. NCBI nr
Match: gi|449453573|ref|XP_004144531.1| (PREDICTED: glycine-rich protein-like [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 3.8e-10
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 1 

Query: 1   METDEVDDVKRHGFGGGQAISVANNVCLNRCAHGCCSCVRGRCIRCC--------IDEEP 59
           MET EVD+V+RH +GG  + ++A   CL+ C  GCC C RGRCIRCC        +D +P
Sbjct: 37  METGEVDNVERHSYGGAHSRNLAE--CLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKP 96

The following BLAST results are available for this feature:
BLAST of Cla015653 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5A1_CUCSA2.7e-1050.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037560 PE=4 SV=1[more]
BLAST of Cla015653 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449453573|ref|XP_004144531.1|3.8e-1050.00PREDICTED: glycine-rich protein-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU37612watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU48560watermelon EST collection version 2.0transcribed_cluster
WMU70559watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla015653Cla015653.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU48560WMU48560transcribed_cluster
WMU37612WMU37612transcribed_cluster
WMU70559WMU70559transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla015653Bottle gourd (USVL1VR-Ls)lsiwmB105
Cla015653Bottle gourd (USVL1VR-Ls)lsiwmB106
Cla015653Cucumber (Gy14) v2cgybwmB146
Cla015653Cucumber (Gy14) v2cgybwmB565
Cla015653Cucumber (Gy14) v2cgybwmB566
Cla015653Melon (DHL92) v3.6.1medwmB109
Cla015653Melon (DHL92) v3.6.1medwmB233
Cla015653Silver-seed gourdcarwmB0194
Cla015653Silver-seed gourdcarwmB0334
Cla015653Silver-seed gourdcarwmB1066
Cla015653Cucumber (Chinese Long) v3cucwmB165
Cla015653Cucumber (Chinese Long) v3cucwmB633
Cla015653Cucumber (Chinese Long) v3cucwmB634
Cla015653Watermelon (97103) v2wmwmbB317
Cla015653Watermelon (97103) v2wmwmbB333
Cla015653Wax gourdwgowmB272
Cla015653Wax gourdwgowmB403
Cla015653Cucumber (Gy14) v1cgywmB346
Cla015653Cucurbita maxima (Rimu)cmawmB121
Cla015653Cucurbita maxima (Rimu)cmawmB503
Cla015653Cucurbita moschata (Rifu)cmowmB117
Cla015653Cucurbita moschata (Rifu)cmowmB496
Cla015653Melon (DHL92) v3.5.1mewmB110
Cla015653Melon (DHL92) v3.5.1mewmB241
Cla015653Watermelon (Charleston Gray)wcgwmB079
Cla015653Watermelon (Charleston Gray)wcgwmB198
Cla015653Watermelon (Charleston Gray)wcgwmB215
Cla015653Cucumber (Chinese Long) v2cuwmB154
Cla015653Cucumber (Chinese Long) v2cuwmB603
Cla015653Cucumber (Chinese Long) v2cuwmB604
Cla015653Cucurbita pepo (Zucchini)cpewmB268
Cla015653Cucurbita pepo (Zucchini)cpewmB305
Cla015653Cucurbita pepo (Zucchini)cpewmB675
Cla015653Bottle gourd (USVL1VR-Ls)lsiwmB080