Cla015649 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla015649
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Calcium-binding EF hand family protein (AHRD V1 **** D7LKY8_ARALL); contains Interpro domain(s) IPR011992 EF-Hand type
Location	Chr2 : 2340016 .. 2340432 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGTAGAAATCTTGGACAGTGCAACCATCGTTAATTTTGTGGAAGACGAAGAAGCTTTCAGTGGTTGGATTAGAGAGCGTTTTAGCCATCTTGACATGGACAGAGATGGAGTTCTTTGTTATGGAGAGATGTTGAAGGAGTTGCAAAGTCTTAGATTGTTGGAGACTCATTTTGGGATCGATACGAAACCCGATCCCGACGAGCTTTCTTCCGTCTATGGCTCCTTGTTCTTGCAGTTCGATCGCGACTGCAATGGAAAAGTTGATCTTGGTGAATTCATGGAAGAAACCAAGAAGATGATGCTGGCAATGGCCAATGGGATTGGCTTTTCTCCTGTTCAAATGTTGTTGGAAGAAAATAGCTTTCTGAAGAAAGCTGTGGATAGAGAGTCCACCAAACTCGCCGCAGCTTAA

mRNA sequence

ATGAGCGTAGAAATCTTGGACAGTGCAACCATCGTTAATTTTGTGGAAGACGAAGAAGCTTTCAGTGGTTGGATTAGAGAGCGTTTTAGCCATCTTGACATGGACAGAGATGGAGTTCTTTGTTATGGAGAGATGTTGAAGGAGTTGCAAAGTCTTAGATTGTTGGAGACTCATTTTGGGATCGATACGAAACCCGATCCCGACGAGCTTTCTTCCGTCTATGGCTCCTTGTTCTTGCAGTTCGATCGCGACTGCAATGGAAAAGTTGATCTTGGTGAATTCATGGAAGAAACCAAGAAGATGATGCTGGCAATGGCCAATGGGATTGGCTTTTCTCCTGTTCAAATGTTGTTGGAAGAAAATAGCTTTCTGAAGAAAGCTGTGGATAGAGAGTCCACCAAACTCGCCGCAGCTTAA

Coding sequence (CDS)

ATGAGCGTAGAAATCTTGGACAGTGCAACCATCGTTAATTTTGTGGAAGACGAAGAAGCTTTCAGTGGTTGGATTAGAGAGCGTTTTAGCCATCTTGACATGGACAGAGATGGAGTTCTTTGTTATGGAGAGATGTTGAAGGAGTTGCAAAGTCTTAGATTGTTGGAGACTCATTTTGGGATCGATACGAAACCCGATCCCGACGAGCTTTCTTCCGTCTATGGCTCCTTGTTCTTGCAGTTCGATCGCGACTGCAATGGAAAAGTTGATCTTGGTGAATTCATGGAAGAAACCAAGAAGATGATGCTGGCAATGGCCAATGGGATTGGCTTTTCTCCTGTTCAAATGTTGTTGGAAGAAAATAGCTTTCTGAAGAAAGCTGTGGATAGAGAGTCCACCAAACTCGCCGCAGCTTAA

Protein sequence

MSVEILDSATIVNFVEDEEAFSGWIRERFSHLDMDRDGVLCYGEMLKELQSLRLLETHFGIDTKPDPDELSSVYGSLFLQFDRDCNGKVDLGEFMEETKKMMLAMANGIGFSPVQMLLEENSFLKKAVDRESTKLAAA

Homology

[Close]

BLAST of Cla015649 vs. TrEMBL
Match: A0A0A0K1Y0_CUCSA (Calcium ion binding protein OS=Cucumis sativus GN=Csa_7G037620 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 2.3e-68
Identity = 132/138 (95.65%), Postives = 137/138 (99.28%), Query Frame = 1


Query: 1   MSVEILDSATIVNFVEDEEAFSGWIRERFSHLDMDRDGVLCYGEMLKELQSLRLLETHFG 60
           MSVEIL+SATI+NFVEDEEAFSGWIRERFSHLD+DRDGVLCYGEMLKELQSLR+LETHFG
Sbjct: 1   MSVEILNSATIMNFVEDEEAFSGWIRERFSHLDIDRDGVLCYGEMLKELQSLRVLETHFG 60

Query: 61  IDTKPDPDELSSVYGSLFLQFDRDCNGKVDLGEFMEETKKMMLAMANGIGFSPVQMLLEE 120
           IDTKPDP+ELSSVYGSLFLQFDRDCNGKVDLGEFMEETKKMMLAMANGIG SPVQMLLEE
Sbjct: 61  IDTKPDPNELSSVYGSLFLQFDRDCNGKVDLGEFMEETKKMMLAMANGIGLSPVQMLLEE 120

Query: 121 NSFLKKAVDRESTKLAAA 139
           NSFLKKAVDRESTKLAAA
Sbjct: 121 NSFLKKAVDRESTKLAAA 138

[Close]

BLAST of Cla015649 vs. TrEMBL
Match: A0A061DTS7_THECC (Calcium-binding EF-hand family protein OS=Theobroma cacao GN=TCM_002258 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.8e-52
Identity = 106/137 (77.37%), Postives = 118/137 (86.13%), Query Frame = 1


Query: 1   MSVEILDSATIVNFVEDEEAFSGWIRERFSHLDMDRDGVLCYGEMLKELQSLRLLETHFG 60
           MSVE+LDSATIVNFVEDEEAF+ WI +RF+HLD D DG+L Y E+LKELQSLR+ ETHFG
Sbjct: 1   MSVEVLDSATIVNFVEDEEAFNVWICDRFAHLDTDHDGLLSYAELLKELQSLRVFETHFG 60

Query: 61  IDTKPDPDELSSVYGSLFLQFDRDCNGKVDLGEFMEETKKMMLAMANGIGFSPVQMLLEE 120
           ID K DP EL+ VY SLF+QFD D NG VDLGEF  E+K+MMLAMANG+GF PVQMLLEE
Sbjct: 61  IDVKTDPKELAHVYNSLFVQFDHDSNGTVDLGEFKAESKRMMLAMANGMGFLPVQMLLEE 120

Query: 121 NSFLKKAVDRESTKLAA 138
            SFLKKAVDRESTKLAA
Sbjct: 121 GSFLKKAVDRESTKLAA 137

[Close]

BLAST of Cla015649 vs. TrEMBL
Match: A0A0A0KHT7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G418660 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 4.1e-49
Identity = 101/137 (73.72%), Postives = 116/137 (84.67%), Query Frame = 1


Query: 1   MSVEILDSATIVNFVEDEEAFSGWIRERFSHLDMDRDGVLCYGEMLKELQSLRLLETHFG 60
           MSVEILDSATIVNFVED+ AF  +IR+RF+HLD +RDG+L Y EML+EL +LR+ ETHFG
Sbjct: 1   MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNRDGLLSYSEMLEELHTLRVFETHFG 60

Query: 61  IDTKPDPDELSSVYGSLFLQFDRDCNGKVDLGEFMEETKKMMLAMANGIGFSPVQMLLEE 120
           ID KPDPDELSSVY SLFLQFDRD +G VDL EF  ETK+MMLAMANG+GF PVQM+LEE
Sbjct: 61  IDVKPDPDELSSVYSSLFLQFDRDSSGTVDLDEFRAETKRMMLAMANGMGFLPVQMVLEE 120

Query: 121 NSFLKKAVDRESTKLAA 138
            SFL KAV+RE+   AA
Sbjct: 121 GSFLMKAVERETAITAA 137

[Close]

BLAST of Cla015649 vs. TrEMBL
Match: V4U9W3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018069mg PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 4.1e-49
Identity = 100/138 (72.46%), Postives = 118/138 (85.51%), Query Frame = 1


Query: 1   MSVEILDSATIVNFVEDEEAFSGWIRERFSHLDMDRDGVLCYGEMLKELQSLRLLETHFG 60
           MSVE+LDSATIV+FVEDEEAF+  IR RF+HLD D DG+L Y EM++EL+SLR+ ETHFG
Sbjct: 1   MSVEVLDSATIVSFVEDEEAFNNSIRNRFAHLDTDHDGLLSYAEMMQELKSLRVFETHFG 60

Query: 61  IDTKPDPDELSSVYGSLFLQFDRDCNGKVDLGEFMEETKKMMLAMANGIGFSPVQMLLEE 120
           ID KPDP+EL+SVY SLF+QFD D NG VDL EF  ETK+MMLAMANG+GF PVQM+LEE
Sbjct: 61  IDEKPDPEELASVYNSLFVQFDHDSNGTVDLEEFKAETKQMMLAMANGLGFLPVQMVLEE 120

Query: 121 NSFLKKAVDRESTKLAAA 139
           +SFL KAV++EST  AAA
Sbjct: 121 DSFLMKAVEKESTAKAAA 138

[Close]

BLAST of Cla015649 vs. TrEMBL
Match: U5GM36_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s21960g PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 5.3e-49
Identity = 102/138 (73.91%), Postives = 116/138 (84.06%), Query Frame = 1


Query: 1   MSVEILDSATIVNFVEDEEAFSGWIRERFSHLDMDRDGVLCYGEMLKELQSLRLLETHFG 60
           MSVEILD ATIVNF+EDEEAFS  I +RF+HLD D DG L YGEMLKELQ LRLLETHFG
Sbjct: 1   MSVEILDGATIVNFLEDEEAFSAQICDRFAHLDSDHDGRLSYGEMLKELQCLRLLETHFG 60

Query: 61  IDTKPDPDELSSVYGSLFLQFDRDCNGKVDLGEFMEETKKMMLAMANGIGFSPVQMLLEE 120
           +D + DPDEL+ VYGSLF+QFD D NG VDL EF  ETK+MMLAMA+G+GF PVQM+LEE
Sbjct: 61  VDVETDPDELALVYGSLFVQFDHDLNGTVDLEEFKSETKQMMLAMASGMGFLPVQMVLEE 120

Query: 121 NSFLKKAVDRESTKLAAA 139
           +SFLKKAV+ ES KL A+
Sbjct: 121 DSFLKKAVEWESAKLVAS 138

[Close]

BLAST of Cla015649 vs. NCBI nr
Match: gi|449453565|ref|XP_004144527.1| (PREDICTED: uncharacterized protein LOC101208564 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 3.3e-68
Identity = 132/138 (95.65%), Postives = 137/138 (99.28%), Query Frame = 1


Query: 1   MSVEILDSATIVNFVEDEEAFSGWIRERFSHLDMDRDGVLCYGEMLKELQSLRLLETHFG 60
           MSVEIL+SATI+NFVEDEEAFSGWIRERFSHLD+DRDGVLCYGEMLKELQSLR+LETHFG
Sbjct: 1   MSVEILNSATIMNFVEDEEAFSGWIRERFSHLDIDRDGVLCYGEMLKELQSLRVLETHFG 60

Query: 61  IDTKPDPDELSSVYGSLFLQFDRDCNGKVDLGEFMEETKKMMLAMANGIGFSPVQMLLEE 120
           IDTKPDP+ELSSVYGSLFLQFDRDCNGKVDLGEFMEETKKMMLAMANGIG SPVQMLLEE
Sbjct: 61  IDTKPDPNELSSVYGSLFLQFDRDCNGKVDLGEFMEETKKMMLAMANGIGLSPVQMLLEE 120

Query: 121 NSFLKKAVDRESTKLAAA 139
           NSFLKKAVDRESTKLAAA
Sbjct: 121 NSFLKKAVDRESTKLAAA 138

[Close]

BLAST of Cla015649 vs. NCBI nr
Match: gi|659110964|ref|XP_008455503.1| (PREDICTED: uncharacterized protein LOC103495655 [Cucumis melo])

HSP 1 Score: 264.6 bits (675), Expect = 9.6e-68
Identity = 132/138 (95.65%), Postives = 134/138 (97.10%), Query Frame = 1


Query: 1   MSVEILDSATIVNFVEDEEAFSGWIRERFSHLDMDRDGVLCYGEMLKELQSLRLLETHFG 60
           MSVEILDSATIVNFVEDEEAFSGWIRERFSHLDMDRDGVLCYGEMLKELQSLR+ ETHFG
Sbjct: 1   MSVEILDSATIVNFVEDEEAFSGWIRERFSHLDMDRDGVLCYGEMLKELQSLRVFETHFG 60

Query: 61  IDTKPDPDELSSVYGSLFLQFDRDCNGKVDLGEFMEETKKMMLAMANGIGFSPVQMLLEE 120
           IDTKPDP+ELSSVY SLFLQFDRDCNGKVDLGEFM ETKKMMLAMANGIG SPVQMLLEE
Sbjct: 61  IDTKPDPNELSSVYASLFLQFDRDCNGKVDLGEFMAETKKMMLAMANGIGLSPVQMLLEE 120

Query: 121 NSFLKKAVDRESTKLAAA 139
           NSFLKKAVDRESTKLAAA
Sbjct: 121 NSFLKKAVDRESTKLAAA 138

[Close]

BLAST of Cla015649 vs. NCBI nr
Match: gi|590711914|ref|XP_007049241.1| (Calcium-binding EF-hand family protein [Theobroma cacao])

HSP 1 Score: 213.4 bits (542), Expect = 2.5e-52
Identity = 106/137 (77.37%), Postives = 118/137 (86.13%), Query Frame = 1


Query: 1   MSVEILDSATIVNFVEDEEAFSGWIRERFSHLDMDRDGVLCYGEMLKELQSLRLLETHFG 60
           MSVE+LDSATIVNFVEDEEAF+ WI +RF+HLD D DG+L Y E+LKELQSLR+ ETHFG
Sbjct: 1   MSVEVLDSATIVNFVEDEEAFNVWICDRFAHLDTDHDGLLSYAELLKELQSLRVFETHFG 60

Query: 61  IDTKPDPDELSSVYGSLFLQFDRDCNGKVDLGEFMEETKKMMLAMANGIGFSPVQMLLEE 120
           ID K DP EL+ VY SLF+QFD D NG VDLGEF  E+K+MMLAMANG+GF PVQMLLEE
Sbjct: 61  IDVKTDPKELAHVYNSLFVQFDHDSNGTVDLGEFKAESKRMMLAMANGMGFLPVQMLLEE 120

Query: 121 NSFLKKAVDRESTKLAA 138
            SFLKKAVDRESTKLAA
Sbjct: 121 GSFLKKAVDRESTKLAA 137

[Close]

BLAST of Cla015649 vs. NCBI nr
Match: gi|567910763|ref|XP_006447695.1| (hypothetical protein CICLE_v10018069mg [Citrus clementina])

HSP 1 Score: 202.2 bits (513), Expect = 5.8e-49
Identity = 100/138 (72.46%), Postives = 118/138 (85.51%), Query Frame = 1


Query: 1   MSVEILDSATIVNFVEDEEAFSGWIRERFSHLDMDRDGVLCYGEMLKELQSLRLLETHFG 60
           MSVE+LDSATIV+FVEDEEAF+  IR RF+HLD D DG+L Y EM++EL+SLR+ ETHFG
Sbjct: 1   MSVEVLDSATIVSFVEDEEAFNNSIRNRFAHLDTDHDGLLSYAEMMQELKSLRVFETHFG 60

Query: 61  IDTKPDPDELSSVYGSLFLQFDRDCNGKVDLGEFMEETKKMMLAMANGIGFSPVQMLLEE 120
           ID KPDP+EL+SVY SLF+QFD D NG VDL EF  ETK+MMLAMANG+GF PVQM+LEE
Sbjct: 61  IDEKPDPEELASVYNSLFVQFDHDSNGTVDLEEFKAETKQMMLAMANGLGFLPVQMVLEE 120

Query: 121 NSFLKKAVDRESTKLAAA 139
           +SFL KAV++EST  AAA
Sbjct: 121 DSFLMKAVEKESTAKAAA 138

[Close]

BLAST of Cla015649 vs. NCBI nr
Match: gi|778716395|ref|XP_011657544.1| (PREDICTED: uncharacterized protein LOC105435869 [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 5.8e-49
Identity = 101/137 (73.72%), Postives = 116/137 (84.67%), Query Frame = 1


Query: 1   MSVEILDSATIVNFVEDEEAFSGWIRERFSHLDMDRDGVLCYGEMLKELQSLRLLETHFG 60
           MSVEILDSATIVNFVED+ AF  +IR+RF+HLD +RDG+L Y EML+EL +LR+ ETHFG
Sbjct: 1   MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNRDGLLSYSEMLEELHTLRVFETHFG 60

Query: 61  IDTKPDPDELSSVYGSLFLQFDRDCNGKVDLGEFMEETKKMMLAMANGIGFSPVQMLLEE 120
           ID KPDPDELSSVY SLFLQFDRD +G VDL EF  ETK+MMLAMANG+GF PVQM+LEE
Sbjct: 61  IDVKPDPDELSSVYSSLFLQFDRDSSGTVDLDEFRAETKRMMLAMANGMGFLPVQMVLEE 120

Query: 121 NSFLKKAVDRESTKLAA 138
            SFL KAV+RE+   AA
Sbjct: 121 GSFLMKAVERETAITAA 137

The following BLAST results are available for this feature:

BLAST of Cla015649 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K1Y0_CUCSA	2.3e-68	95.65	Calcium ion binding protein OS=Cucumis sativus GN=Csa_7G037620 PE=4 SV=1	[more]
A0A061DTS7_THECC	1.8e-52	77.37	Calcium-binding EF-hand family protein OS=Theobroma cacao GN=TCM_002258 PE=4 SV=...	[more]
A0A0A0KHT7_CUCSA	4.1e-49	73.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G418660 PE=4 SV=1	[more]
V4U9W3_9ROSI	4.1e-49	72.46	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018069mg PE=4 SV=1	[more]
U5GM36_POPTR	5.3e-49	73.91	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s21960g PE=4 SV=1	[more]

BLAST of Cla015649 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453565\|ref\|XP_004144527.1\|	3.3e-68	95.65	PREDICTED: uncharacterized protein LOC101208564 [Cucumis sativus]	[more]
gi\|659110964\|ref\|XP_008455503.1\|	9.6e-68	95.65	PREDICTED: uncharacterized protein LOC103495655 [Cucumis melo]	[more]
gi\|590711914\|ref\|XP_007049241.1\|	2.5e-52	77.37	Calcium-binding EF-hand family protein [Theobroma cacao]	[more]
gi\|567910763\|ref\|XP_006447695.1\|	5.8e-49	72.46	hypothetical protein CICLE_v10018069mg [Citrus clementina]	[more]
gi\|778716395\|ref\|XP_011657544.1\|	5.8e-49	73.72	PREDICTED: uncharacterized protein LOC105435869 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002048	EF_hand_dom
IPR011992	EF-hand-dom_pair
IPR018247	EF_Hand_1_Ca_BS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla015649	Cla015649.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 25..96 score: 2.
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 24..52 score: 2.1coord: 73..101 score:
IPR002048	EF-hand domain	PROFILE	PS50222	EF_HAND_2	coord: 25..55 score: 7.623coord: 69..104 score: 8
IPR011992	EF-hand domain pair	GENE3D	G3DSA:1.10.238.10		coord: 26..100 score: 8.1
IPR011992	EF-hand domain pair	unknown	SSF47473	EF-hand	coord: 22..105 score: 1.1
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 82..94 score: -coord: 33..45 scor
None	No IPR available	PANTHER	PTHR10891	EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN	coord: 1..111 score: 1.1
None	No IPR available	PANTHER	PTHR10891:SF615	SUBFAMILY NOT NAMED	coord: 1..111 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla015649	Cucumber (Chinese Long) v2	cuwmB154
Cla015649	Cucumber (Chinese Long) v2	cuwmB603
Cla015649	Cucumber (Chinese Long) v2	cuwmB604
Cla015649	Cucurbita pepo (Zucchini)	cpewmB268
Cla015649	Cucurbita pepo (Zucchini)	cpewmB305
Cla015649	Cucurbita pepo (Zucchini)	cpewmB675
Cla015649	Bottle gourd (USVL1VR-Ls)	lsiwmB080
Cla015649	Bottle gourd (USVL1VR-Ls)	lsiwmB105
Cla015649	Bottle gourd (USVL1VR-Ls)	lsiwmB106
Cla015649	Cucumber (Gy14) v2	cgybwmB146
Cla015649	Cucumber (Gy14) v2	cgybwmB565
Cla015649	Cucumber (Gy14) v2	cgybwmB566
Cla015649	Melon (DHL92) v3.6.1	medwmB109
Cla015649	Melon (DHL92) v3.6.1	medwmB233
Cla015649	Silver-seed gourd	carwmB0194
Cla015649	Silver-seed gourd	carwmB0334
Cla015649	Silver-seed gourd	carwmB1066
Cla015649	Cucumber (Chinese Long) v3	cucwmB165
Cla015649	Cucumber (Chinese Long) v3	cucwmB633
Cla015649	Cucumber (Chinese Long) v3	cucwmB634
Cla015649	Watermelon (97103) v2	wmwmbB317
Cla015649	Watermelon (97103) v2	wmwmbB333
Cla015649	Wax gourd	wgowmB272
Cla015649	Wax gourd	wgowmB403
Cla015649	Cucumber (Gy14) v1	cgywmB346
Cla015649	Cucurbita maxima (Rimu)	cmawmB503
Cla015649	Cucurbita moschata (Rifu)	cmowmB117
Cla015649	Cucurbita moschata (Rifu)	cmowmB496
Cla015649	Melon (DHL92) v3.5.1	mewmB110
Cla015649	Melon (DHL92) v3.5.1	mewmB241
Cla015649	Watermelon (Charleston Gray)	wcgwmB079
Cla015649	Watermelon (Charleston Gray)	wcgwmB198
Cla015649	Watermelon (Charleston Gray)	wcgwmB215