Cla015478 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla015478
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Transcription elongation regulator 1 (AHRD V1 ***- B0WFW6_CULQU); contains Interpro domain(s) IPR002713 FF domain
Location	Chr9 : 1228785 .. 1230612 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGGGTCCGTCTAAAAGTACGAAAGAAAGAGGCAGTTGCATCTTTTCAAGCATTGCTTGTTGAATCGATCAAAGACCCCCAGGTATGTCTTTTGGACTATTATTATGTGGCTAGTTTTTATGGAAAAATAAAGAAGGAAAGAGGGATAATGGGGGAGGGTAATGGATTAAGAAAATGGAGCCTCGTATGTCTGATCAGTCTGAATGTAGTAGTGATTGAGATGTCTTTTGCTGGTGAATTTAAAAGCATACAATATGTTCTAAATTTCAACTGAAAATTGTCTGCCACGAAGTTAACCATAAGTTATTGGATCATTTATTTATTTTTATTAAACATCCAATCAATCCCTCCCTGCTAATGAACAGGAGTCAAATACGTCCTGGTTTGGTTGATTCTGCAGTGTCAACTATGTATGTAGCTTTCTTTATATATATATATATCTTTTTTTTTTTTTTTTTGGTTTAGGCCTCTTGGACTGAGTCAAAAGTTAAATTGGAGAAGGATCCACAAGGGCGTGCATCCAATCCTGATTTAGATTCATCTGACACAGAAAAGTTATTCAGAGAACATGTAAAGATGCTGCAAGAGGTACTTCTACGACTCACTTATCTTTAATTGTTAATTCCTTTCACCAACATTTACAGAGTCGCGCTCAATATTTTTTTACAAGAAGTATATAATTTGAATTTGAGCTGATCTTTAGAACTCAAAGAAAGTTGTACAACCTATAGAACAAATCCTGTTCAAGTAAGGTTGTTTAGATGGCTTTTTCGCAGCTTCTAACCTAAATTGAGGCAATCTTATATTTGTTTCTCTCATCTTTTTCCCGTGTCTCCTACCCATACGATCTCTCTGCTAGGATTCAAATGTTATGAAAACTATATGTTTATCTTATTGCTGTCCCAAATTTTTTATTATCGCATTATCTGTCTTCCATTGATGGGAACTTTACATTCTTTGCTTCTCTTTTCAGCAAAAGCTTGTAATGATACGATTGAATCTCAATAGAATTTACGATCTTGTTTATGAATCTGTTCGCTAGTCTTGATGATTTTGCATAGTAATAAAAGCTCCTAGATATTGGAAGTAGTTATGGGTTCTGAACTTCTAATTCGAACTGCTATAAAATTAGGTGGTATAGTCTCTATCTCCAAAGCAAACGTACTTGGAAAGAATTGGGGAAACAGTTATCTGTAGATCGATCCTATGAGAAAATAGGTGATCCCTTGCTGGTTTGCTCAGCACTACACTCTTCATTCTCAATGTTTGTAGCTAATTTCGTAAATTCTTAAACAAAGTGAATGGAAAAAGATTTAACTTGTATGACTGGATAATAATTTTCCAGGACTTTAACATGACTTGAGACTTAAGAGCTGTTCCCTTAGTGGGTCGGTGACTCACGTGTGTCTTTTTACTGCATTACAACTGGAGAGTGAATGTTTATGGCTGTTGTCTGTTAGCAGTTTGCCAACGCATTATATCTCTCAATCTTTTCCGTTTGCATTTTTCTGCAGCGGTGTGCAAACGAGTTCAGAAGTCTATTATCTGAAGCCTTTACAGCCGAGGTGGTTGCTCAGGTGTCTGAAGATGGTAAAACAGTTCTTAATTCATGGACGATGGCTAAACGAATTTTGAAGCCCGATCCCAGATATAGTAAAGTCCCAAGGAAGGAAAGGGAGGCAGTTTGGCGTCGTTATGCTGATGATACATTGCGGAAGCAGAAGTTGGCAAATGATCATAAAGGAGAAAAACATAACGACTTTAAGAGTAGAGCAACCATTGACGCTGGAAAATTTCCGTCTAAACCAAGAATCCATGAATGA

mRNA sequence

ATGGAAAGGGTCCGTCTAAAAGTACGAAAGAAAGAGGCAGTTGCATCTTTTCAAGCATTGCTTGTTGAATCGATCAAAGACCCCCAGGCCTCTTGGACTGAGTCAAAAGTTAAATTGGAGAAGGATCCACAAGGGCGTGCATCCAATCCTGATTTAGATTCATCTGACACAGAAAAGTTATTCAGAGAACATGTAAAGATGCTGCAAGAGCGGTGTGCAAACGAGTTCAGAAGTCTATTATCTGAAGCCTTTACAGCCGAGGTGGTTGCTCAGGTGTCTGAAGATGGTAAAACAGTTCTTAATTCATGGACGATGGCTAAACGAATTTTGAAGCCCGATCCCAGATATAGTAAAGTCCCAAGGAAGGAAAGGGAGGCAGTTTGGCGTCGTTATGCTGATGATACATTGCGGAAGCAGAAGTTGGCAAATGATCATAAAGGAGAAAAACATAACGACTTTAAGAGTAGAGCAACCATTGACGCTGGAAAATTTCCGTCTAAACCAAGAATCCATGAATGA

Coding sequence (CDS)

ATGGAAAGGGTCCGTCTAAAAGTACGAAAGAAAGAGGCAGTTGCATCTTTTCAAGCATTGCTTGTTGAATCGATCAAAGACCCCCAGGCCTCTTGGACTGAGTCAAAAGTTAAATTGGAGAAGGATCCACAAGGGCGTGCATCCAATCCTGATTTAGATTCATCTGACACAGAAAAGTTATTCAGAGAACATGTAAAGATGCTGCAAGAGCGGTGTGCAAACGAGTTCAGAAGTCTATTATCTGAAGCCTTTACAGCCGAGGTGGTTGCTCAGGTGTCTGAAGATGGTAAAACAGTTCTTAATTCATGGACGATGGCTAAACGAATTTTGAAGCCCGATCCCAGATATAGTAAAGTCCCAAGGAAGGAAAGGGAGGCAGTTTGGCGTCGTTATGCTGATGATACATTGCGGAAGCAGAAGTTGGCAAATGATCATAAAGGAGAAAAACATAACGACTTTAAGAGTAGAGCAACCATTGACGCTGGAAAATTTCCGTCTAAACCAAGAATCCATGAATGA

Protein sequence

MERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRSLLSEAFTAEVVAQVSEDGKTVLNSWTMAKRILKPDPRYSKVPRKEREAVWRRYADDTLRKQKLANDHKGEKHNDFKSRATIDAGKFPSKPRIHE

Homology

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BLAST of Cla015478 vs. Swiss-Prot
Match: PR40C_ARATH (Pre-mRNA-processing protein 40C OS=Arabidopsis thaliana GN=MED35C PE=1 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 6.6e-50
Identity = 94/155 (60.65%), Postives = 123/155 (79.35%), Query Frame = 1


Query: 1   MERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASNPDLDSSDTEKL 60
           +ERVR K+R+KEA +S+QALLVE I+DP+ASWTESK  LE+DPQ RASNPDL+ +D EKL
Sbjct: 682 VERVRQKIRRKEASSSYQALLVEKIRDPEASWTESKPILERDPQKRASNPDLEPADKEKL 741

Query: 61  FREHVKMLQERCANEFRSLLSEAFTAEVVAQVSEDGKTVLNSWTMAKRILKPDPRYSKVP 120
           FR+HVK L ERC ++F++LL+EA ++E     +EDGKT LNSW+ AK++LKPD RYSK+P
Sbjct: 742 FRDHVKSLYERCVHDFKALLAEALSSEAATLQTEDGKTALNSWSTAKQVLKPDIRYSKMP 801

Query: 121 RKEREAVWRRYADDTLRKQKLANDHKGEKHNDFKS 156
           R++RE VWRRY +D  RKQ+  N ++ EK  D+K+
Sbjct: 802 RQDREVVWRRYVEDISRKQRHEN-YQEEKQRDYKT 835

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BLAST of Cla015478 vs. Swiss-Prot
Match: TCRG1_HUMAN (Transcription elongation regulator 1 OS=Homo sapiens GN=TCERG1 PE=1 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 3.9e-10
Identity = 36/125 (28.80%), Postives = 67/125 (53.60%), Query Frame = 1


Query: 1   MERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASNPDLDSSDTEKL 60
           ++R R + +++EA+ +F+ALL + ++    SW++++  L KD +  + +  L+  + EKL
Sbjct: 887 IDREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSL-LEREEKEKL 946

Query: 61  FREHVKMLQERCANEFRSLLSEAFTAEVVAQVSEDGKTVLNSWTMAKRILKPDPRYSKVP 120
           F EH++ L ++    FR LL E               T+ ++W   K+I+K DPR  K  
Sbjct: 947 FNEHIEALTKKKREHFRQLLDET-----------SAITLTSTWKEVKKIIKEDPRCIKFS 999

Query: 121 RKERE 126
             +R+
Sbjct: 1007 SSDRK 999

HSP 2 Score: 35.0 bits (79), Expect = 9.6e-01
Identity = 21/74 (28.38%), Postives = 38/74 (51.35%), Query Frame = 1


Query: 2   ERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASNPDLDSSDTEKLF 61
           E+   K R ++  + F  LL     D Q+ W++ K K+E DP+ +A +    SS  E LF
Sbjct: 784 EKEDSKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVD---SSSMREDLF 843

Query: 62  REHVKMLQERCANE 76
           +++++ + +   +E
Sbjct: 844 KQYIEKIAKNLDSE 854

[Close]

BLAST of Cla015478 vs. Swiss-Prot
Match: TCRG1_MOUSE (Transcription elongation regulator 1 OS=Mus musculus GN=Tcerg1 PE=1 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 3.9e-10
Identity = 36/125 (28.80%), Postives = 67/125 (53.60%), Query Frame = 1


Query: 1    MERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASNPDLDSSDTEKL 60
            ++R R + +++EA+ +F+ALL + ++    SW++++  L KD +  + +  L+  + EKL
Sbjct: 889  IDREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSL-LEREEKEKL 948

Query: 61   FREHVKMLQERCANEFRSLLSEAFTAEVVAQVSEDGKTVLNSWTMAKRILKPDPRYSKVP 120
            F EH++ L ++    FR LL E               T+ ++W   K+I+K DPR  K  
Sbjct: 949  FNEHIEALTKKKREHFRQLLDET-----------SAITLTSTWKEVKKIIKEDPRCIKFS 1001

Query: 121  RKERE 126
              +R+
Sbjct: 1009 SSDRK 1001

HSP 2 Score: 35.0 bits (79), Expect = 9.6e-01
Identity = 21/74 (28.38%), Postives = 38/74 (51.35%), Query Frame = 1


Query: 2   ERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASNPDLDSSDTEKLF 61
           E+   K R ++  + F  LL     D Q+ W++ K K+E DP+ +A +    SS  E LF
Sbjct: 786 EKEDSKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVD---SSSMREDLF 845

Query: 62  REHVKMLQERCANE 76
           +++++ + +   +E
Sbjct: 846 KQYIEKIAKNLDSE 856

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BLAST of Cla015478 vs. TrEMBL
Match: A0A0A0K978_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G447710 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 2.3e-86
Identity = 160/172 (93.02%), Postives = 169/172 (98.26%), Query Frame = 1


Query: 1   MERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASNPDLDSSDTEKL 60
           MERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASN DLDSS+TEKL
Sbjct: 674 MERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASNTDLDSSETEKL 733

Query: 61  FREHVKMLQERCANEFRSLLSEAFTAEVVAQVSEDGKTVLNSWTMAKRILKPDPRYSKVP 120
           FREHVKMLQERCANEFR+LLSE+FTAEVVAQVSEDGKTVLNSWTMAKRILKPDPRY KVP
Sbjct: 734 FREHVKMLQERCANEFRNLLSESFTAEVVAQVSEDGKTVLNSWTMAKRILKPDPRYGKVP 793

Query: 121 RKEREAVWRRYADDTLRKQKLANDHKGEKHNDFKSRATIDAGKFPSKPRIHE 173
           RKEREA+WRRYADDT+RKQKLANDHKGEK+ND+K+RAT DAGKFPSKPRIH+
Sbjct: 794 RKEREALWRRYADDTVRKQKLANDHKGEKYNDYKNRATTDAGKFPSKPRIHD 845

[Close]

BLAST of Cla015478 vs. TrEMBL
Match: A0A0A0K978_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G447710 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.2e-02
Identity = 39/156 (25.00%), Postives = 68/156 (43.59%), Query Frame = 1


Query: 2   ERVRLKVRKKEAVASFQALLVESIKDPQ--ASWTESKVKLEKDPQGRASNPDLDSSDTEK 61
           ER   +  +K A+  F+ LL  + +D     S+   K K   D +  A    LD  D E 
Sbjct: 504 ERKEKRAAQKAAIEGFKQLLDSASEDIDHTTSYQTFKKKWGNDSRFEA----LDRKDREN 563

Query: 62  LFREHVKMLQERCANEFRSLLSEAFTAEVVAQVSEDGKTVLNSWTMAKRILKPDPRYSKV 121
           L  E V  L++    + ++L + + T+        +   + + W   K  L+ DPRY  V
Sbjct: 564 LLNERVLCLKKAAVEKAQALWAASTTSFKSMLQEREDININSRWFRVKDSLREDPRYRSV 623

Query: 122 PRKEREAVWRRY------ADDTLRKQKLANDHKGEK 150
             +ERE ++  Y      A++  +++  A   + EK
Sbjct: 624 KHEEREMLFNEYISELKAAEEEKQRESKARKEEQEK 655

HSP 2 Score: 251.1 bits (640), Expect = 9.5e-64
Identity = 125/173 (72.25%), Postives = 145/173 (83.82%), Query Frame = 1


Query: 1   MERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASNPDLDSSDTEKL 60
           MERVRLKVR+KEAVASFQALLVE+IKDPQASWTESK KLEKDPQGRA+NPDLD SDTEKL
Sbjct: 642 MERVRLKVRRKEAVASFQALLVETIKDPQASWTESKPKLEKDPQGRAANPDLDPSDTEKL 701

Query: 61  FREHVKMLQERCANEFRSLLSEAFTAEVVAQVSEDGKTVLNSWTMAKRILKPDPRYSKVP 120
           FREH+KML ERC ++FR+LL+E  T +  AQ +E GKTV NSW+ AKR+LKPDPRYSK+P
Sbjct: 702 FREHIKMLFERCTHDFRALLAEVITQDAAAQETEGGKTVFNSWSTAKRLLKPDPRYSKMP 761

Query: 121 RKEREAVWRRYADDTLRKQKLANDHKGEKHNDFKSRATIDAGKFPSKPR-IHE 173
           RKEREA+WRRYA+D LRKQK A D + EK  D K R++ D G+F S  R +HE
Sbjct: 762 RKEREALWRRYAEDMLRKQKSALDQEEEKRTDAKVRSSGDLGRFSSGSRKVHE 814

[Close]

BLAST of Cla015478 vs. TrEMBL
Match: A0A061EFX2_THECC (Pre-mRNA-processing protein 40C OS=Theobroma cacao GN=TCM_011085 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 9.3e-03
Identity = 39/136 (28.68%), Postives = 62/136 (45.59%), Query Frame = 1


Query: 2   ERVRLKVRKKEAVASFQALLVESIKD--PQASWTESKVKLEKDPQGRASNPDLDSSDTEK 61
           ER   +   K A+  F+ LL E+ +D     ++   K K   D +  A    LD  D E 
Sbjct: 472 ERREKRAALKAAIEGFKQLLDEASEDIDHNTNYQTFKRKWGSDLRFEA----LDRKDREL 531

Query: 62  LFREHVKMLQERCANEFRSLLSEAFTAEVVAQVSEDGKTVLNS-WTMAKRILKPDPRYSK 121
           L  E V  L+ R A E    +  A  + + + + E G   +NS W+  K  ++ DPRY  
Sbjct: 532 LLTERVLPLK-RAAEEKAQAIRAAAASSLKSMLKEKGDITVNSRWSRVKDSIRDDPRYKC 591

Query: 122 VPRKEREAVWRRYADD 135
           V  ++RE ++  Y  +
Sbjct: 592 VKHEDREVLFNEYISE 602

HSP 2 Score: 248.1 bits (632), Expect = 8.0e-63
Identity = 123/170 (72.35%), Postives = 143/170 (84.12%), Query Frame = 1


Query: 1   MERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASNPDLDSSDTEKL 60
           MERVRLKVR+KEAVASFQALLVE+IKDPQASWTESK KLEKDPQGRA+NPDLDSSD EKL
Sbjct: 711 MERVRLKVRRKEAVASFQALLVETIKDPQASWTESKPKLEKDPQGRAANPDLDSSDMEKL 770

Query: 61  FREHVKMLQERCANEFRSLLSEAFTAEVVAQVSEDGKTVLNSWTMAKRILKPDPRYSKVP 120
           FREH+KML ERC N+FR+LL+E  T +  AQ +E GKT LNSW+ AKR+LKPDPRY+K+P
Sbjct: 771 FREHIKMLFERCVNDFRALLAEVITQDATAQETEGGKTALNSWSTAKRLLKPDPRYNKMP 830

Query: 121 RKEREAVWRRYADDTLRKQKLANDHKGEKHNDFKSRAT-IDAGKFPSKPR 170
           RKEREA+WRRYA+D LRKQK A D + EKH D K R++  D G++ S  R
Sbjct: 831 RKEREALWRRYAEDMLRKQKSALDQEEEKHTDVKGRSSGGDFGRYSSGTR 880

[Close]

BLAST of Cla015478 vs. TrEMBL
Match: A0A0D2Q7N4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G167700 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.7e-04
Identity = 41/136 (30.15%), Postives = 64/136 (47.06%), Query Frame = 1


Query: 2   ERVRLKVRKKEAVASFQALLVESIKD--PQASWTESKVKLEKDPQGRASNPDLDSSDTEK 61
           ER   +  +K A+  F+ LL E+ +D     ++   K K   DP+  A    LD  D E 
Sbjct: 542 ERKEKRAAQKAAIEGFKQLLDEASEDIDHDTNYQTFKRKWGSDPRFEA----LDRKDREL 601

Query: 62  LFREHVKMLQERCANEFRSLLSEAFTAEVVAQVSEDGKTVLNS-WTMAKRILKPDPRYSK 121
           L  E V +L+ R A E    +  A  +   + + E G   +NS W+  K  L+ DPRY  
Sbjct: 602 LLNERVLLLK-RAAEEKARAIRAAAASSFKSMLKEKGDINVNSRWSRVKDSLRDDPRYKC 661

Query: 122 VPRKEREAVWRRYADD 135
           V  ++RE ++  Y  +
Sbjct: 662 VKHEDREVLFNEYISE 672

HSP 2 Score: 248.1 bits (632), Expect = 8.0e-63
Identity = 123/170 (72.35%), Postives = 143/170 (84.12%), Query Frame = 1


Query: 1   MERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASNPDLDSSDTEKL 60
           MERVRLKVR+KEAVASFQALLVE+IKDPQASWTESK KLEKDPQGRA+NPDLDSSD EKL
Sbjct: 712 MERVRLKVRRKEAVASFQALLVETIKDPQASWTESKPKLEKDPQGRAANPDLDSSDMEKL 771

Query: 61  FREHVKMLQERCANEFRSLLSEAFTAEVVAQVSEDGKTVLNSWTMAKRILKPDPRYSKVP 120
           FREH+KML ERC N+FR+LL+E  T +  AQ +E GKT LNSW+ AKR+LKPDPRY+K+P
Sbjct: 772 FREHIKMLFERCVNDFRALLAEVITQDATAQETEGGKTALNSWSTAKRLLKPDPRYNKMP 831

Query: 121 RKEREAVWRRYADDTLRKQKLANDHKGEKHNDFKSRAT-IDAGKFPSKPR 170
           RKEREA+WRRYA+D LRKQK A D + EKH D K R++  D G++ S  R
Sbjct: 832 RKEREALWRRYAEDMLRKQKSALDQEEEKHTDVKGRSSGGDFGRYSSGTR 881

[Close]

BLAST of Cla015478 vs. TrEMBL
Match: A0A0D2MC25_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G167700 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.7e-04
Identity = 41/136 (30.15%), Postives = 64/136 (47.06%), Query Frame = 1


Query: 2   ERVRLKVRKKEAVASFQALLVESIKD--PQASWTESKVKLEKDPQGRASNPDLDSSDTEK 61
           ER   +  +K A+  F+ LL E+ +D     ++   K K   DP+  A    LD  D E 
Sbjct: 542 ERKEKRAAQKAAIEGFKQLLDEASEDIDHDTNYQTFKRKWGSDPRFEA----LDRKDREL 601

Query: 62  LFREHVKMLQERCANEFRSLLSEAFTAEVVAQVSEDGKTVLNS-WTMAKRILKPDPRYSK 121
           L  E V +L+ R A E    +  A  +   + + E G   +NS W+  K  L+ DPRY  
Sbjct: 602 LLNERVLLLK-RAAEEKARAIRAAAASSFKSMLKEKGDINVNSRWSRVKDSLRDDPRYKC 661

Query: 122 VPRKEREAVWRRYADD 135
           V  ++RE ++  Y  +
Sbjct: 662 VKHEDREVLFNEYISE 672

HSP 2 Score: 248.1 bits (632), Expect = 8.0e-63
Identity = 123/170 (72.35%), Postives = 143/170 (84.12%), Query Frame = 1


Query: 1   MERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASNPDLDSSDTEKL 60
           MERVRLKVR+KEAVASFQALLVE+IKDPQASWTESK KLEKDPQGRA+NPDLDSSD EKL
Sbjct: 713 MERVRLKVRRKEAVASFQALLVETIKDPQASWTESKPKLEKDPQGRAANPDLDSSDMEKL 772

Query: 61  FREHVKMLQERCANEFRSLLSEAFTAEVVAQVSEDGKTVLNSWTMAKRILKPDPRYSKVP 120
           FREH+KML ERC N+FR+LL+E  T +  AQ +E GKT LNSW+ AKR+LKPDPRY+K+P
Sbjct: 773 FREHIKMLFERCVNDFRALLAEVITQDATAQETEGGKTALNSWSTAKRLLKPDPRYNKMP 832

Query: 121 RKEREAVWRRYADDTLRKQKLANDHKGEKHNDFKSRAT-IDAGKFPSKPR 170
           RKEREA+WRRYA+D LRKQK A D + EKH D K R++  D G++ S  R
Sbjct: 833 RKEREALWRRYAEDMLRKQKSALDQEEEKHTDVKGRSSGGDFGRYSSGTR 882

[Close]

BLAST of Cla015478 vs. NCBI nr
Match: gi|659124506|ref|XP_008462197.1| (PREDICTED: pre-mRNA-processing protein 40C [Cucumis melo])

HSP 1 Score: 328.9 bits (842), Expect = 5.1e-87
Identity = 161/172 (93.60%), Postives = 170/172 (98.84%), Query Frame = 1


Query: 1   MERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASNPDLDSSDTEKL 60
           MERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASNPDLDSS+TEKL
Sbjct: 675 MERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASNPDLDSSETEKL 734

Query: 61  FREHVKMLQERCANEFRSLLSEAFTAEVVAQVSEDGKTVLNSWTMAKRILKPDPRYSKVP 120
           FREHVKMLQERCANEFR+LLSEAFTAEVVAQVSEDGKTVL+SWTMAKRILKPDPRY KVP
Sbjct: 735 FREHVKMLQERCANEFRNLLSEAFTAEVVAQVSEDGKTVLSSWTMAKRILKPDPRYGKVP 794

Query: 121 RKEREAVWRRYADDTLRKQKLANDHKGEKHNDFKSRATIDAGKFPSKPRIHE 173
           RKEREA+WRRYADDT+RKQKLANDHKGEK+ND+K+RAT DAGKFPSKPRIH+
Sbjct: 795 RKEREALWRRYADDTMRKQKLANDHKGEKYNDYKNRATTDAGKFPSKPRIHD 846

[Close]

BLAST of Cla015478 vs. NCBI nr
Match: gi|659124506|ref|XP_008462197.1| (PREDICTED: pre-mRNA-processing protein 40C [Cucumis melo])

HSP 1 Score: 48.5 bits (114), Expect = 1.3e-02
Identity = 40/156 (25.64%), Postives = 68/156 (43.59%), Query Frame = 1


Query: 2   ERVRLKVRKKEAVASFQALLVESIKDPQ--ASWTESKVKLEKDPQGRASNPDLDSSDTEK 61
           ER   +  +K A+  F+ LL  + +D     S+   K K   D +  A    LD  D E 
Sbjct: 505 ERKEKRAAQKAAIEGFKQLLDSASEDIDHTTSYQTFKKKWGNDSRFEA----LDRKDREN 564

Query: 62  LFREHVKMLQERCANEFRSLLSEAFTAEVVAQVSEDGKTVLNSWTMAKRILKPDPRYSKV 121
           L  E V  L++    + ++L + + T+        +   V + W   K  L+ DPRY  V
Sbjct: 565 LLNERVLCLKKAAVEKAQALWAASTTSFKSMLQEREDINVNSRWFRVKDSLREDPRYRSV 624

Query: 122 PRKEREAVWRRY------ADDTLRKQKLANDHKGEK 150
             +ERE ++  Y      A++  +++  A   + EK
Sbjct: 625 KHEEREMLFNEYISELKAAEEEKQRESKARKEEQEK 656

HSP 2 Score: 326.2 bits (835), Expect = 3.3e-86
Identity = 160/172 (93.02%), Postives = 169/172 (98.26%), Query Frame = 1


Query: 1   MERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASNPDLDSSDTEKL 60
           MERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASN DLDSS+TEKL
Sbjct: 674 MERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASNTDLDSSETEKL 733

Query: 61  FREHVKMLQERCANEFRSLLSEAFTAEVVAQVSEDGKTVLNSWTMAKRILKPDPRYSKVP 120
           FREHVKMLQERCANEFR+LLSE+FTAEVVAQVSEDGKTVLNSWTMAKRILKPDPRY KVP
Sbjct: 734 FREHVKMLQERCANEFRNLLSESFTAEVVAQVSEDGKTVLNSWTMAKRILKPDPRYGKVP 793

Query: 121 RKEREAVWRRYADDTLRKQKLANDHKGEKHNDFKSRATIDAGKFPSKPRIHE 173
           RKEREA+WRRYADDT+RKQKLANDHKGEK+ND+K+RAT DAGKFPSKPRIH+
Sbjct: 794 RKEREALWRRYADDTVRKQKLANDHKGEKYNDYKNRATTDAGKFPSKPRIHD 845

[Close]

BLAST of Cla015478 vs. NCBI nr
Match: gi|778729430|ref|XP_011659583.1| (PREDICTED: pre-mRNA-processing protein 40C [Cucumis sativus])

HSP 1 Score: 48.1 bits (113), Expect = 1.8e-02
Identity = 39/156 (25.00%), Postives = 68/156 (43.59%), Query Frame = 1


Query: 2   ERVRLKVRKKEAVASFQALLVESIKDPQ--ASWTESKVKLEKDPQGRASNPDLDSSDTEK 61
           ER   +  +K A+  F+ LL  + +D     S+   K K   D +  A    LD  D E 
Sbjct: 504 ERKEKRAAQKAAIEGFKQLLDSASEDIDHTTSYQTFKKKWGNDSRFEA----LDRKDREN 563

Query: 62  LFREHVKMLQERCANEFRSLLSEAFTAEVVAQVSEDGKTVLNSWTMAKRILKPDPRYSKV 121
           L  E V  L++    + ++L + + T+        +   + + W   K  L+ DPRY  V
Sbjct: 564 LLNERVLCLKKAAVEKAQALWAASTTSFKSMLQEREDININSRWFRVKDSLREDPRYRSV 623

Query: 122 PRKEREAVWRRY------ADDTLRKQKLANDHKGEK 150
             +ERE ++  Y      A++  +++  A   + EK
Sbjct: 624 KHEEREMLFNEYISELKAAEEEKQRESKARKEEQEK 655

HSP 2 Score: 251.1 bits (640), Expect = 1.4e-63
Identity = 125/173 (72.25%), Postives = 145/173 (83.82%), Query Frame = 1


Query: 1   MERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASNPDLDSSDTEKL 60
           MERVRLKVR+KEAVASFQALLVE+IKDPQASWTESK KLEKDPQGRA+NPDLD SDTEKL
Sbjct: 642 MERVRLKVRRKEAVASFQALLVETIKDPQASWTESKPKLEKDPQGRAANPDLDPSDTEKL 701

Query: 61  FREHVKMLQERCANEFRSLLSEAFTAEVVAQVSEDGKTVLNSWTMAKRILKPDPRYSKVP 120
           FREH+KML ERC ++FR+LL+E  T +  AQ +E GKTV NSW+ AKR+LKPDPRYSK+P
Sbjct: 702 FREHIKMLFERCTHDFRALLAEVITQDAAAQETEGGKTVFNSWSTAKRLLKPDPRYSKMP 761

Query: 121 RKEREAVWRRYADDTLRKQKLANDHKGEKHNDFKSRATIDAGKFPSKPR-IHE 173
           RKEREA+WRRYA+D LRKQK A D + EK  D K R++ D G+F S  R +HE
Sbjct: 762 RKEREALWRRYAEDMLRKQKSALDQEEEKRTDAKVRSSGDLGRFSSGSRKVHE 814

[Close]

BLAST of Cla015478 vs. NCBI nr
Match: gi|590697013|ref|XP_007045322.1| (Pre-mRNA-processing protein 40C [Theobroma cacao])

HSP 1 Score: 48.5 bits (114), Expect = 1.3e-02
Identity = 39/136 (28.68%), Postives = 62/136 (45.59%), Query Frame = 1


Query: 2   ERVRLKVRKKEAVASFQALLVESIKD--PQASWTESKVKLEKDPQGRASNPDLDSSDTEK 61
           ER   +   K A+  F+ LL E+ +D     ++   K K   D +  A    LD  D E 
Sbjct: 472 ERREKRAALKAAIEGFKQLLDEASEDIDHNTNYQTFKRKWGSDLRFEA----LDRKDREL 531

Query: 62  LFREHVKMLQERCANEFRSLLSEAFTAEVVAQVSEDGKTVLNS-WTMAKRILKPDPRYSK 121
           L  E V  L+ R A E    +  A  + + + + E G   +NS W+  K  ++ DPRY  
Sbjct: 532 LLTERVLPLK-RAAEEKAQAIRAAAASSLKSMLKEKGDITVNSRWSRVKDSIRDDPRYKC 591

Query: 122 VPRKEREAVWRRYADD 135
           V  ++RE ++  Y  +
Sbjct: 592 VKHEDREVLFNEYISE 602

HSP 2 Score: 248.1 bits (632), Expect = 1.2e-62
Identity = 123/170 (72.35%), Postives = 143/170 (84.12%), Query Frame = 1


Query: 1   MERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASNPDLDSSDTEKL 60
           MERVRLKVR+KEAVASFQALLVE+IKDPQASWTESK KLEKDPQGRA+NPDLDSSD EKL
Sbjct: 712 MERVRLKVRRKEAVASFQALLVETIKDPQASWTESKPKLEKDPQGRAANPDLDSSDMEKL 771

Query: 61  FREHVKMLQERCANEFRSLLSEAFTAEVVAQVSEDGKTVLNSWTMAKRILKPDPRYSKVP 120
           FREH+KML ERC N+FR+LL+E  T +  AQ +E GKT LNSW+ AKR+LKPDPRY+K+P
Sbjct: 772 FREHIKMLFERCVNDFRALLAEVITQDATAQETEGGKTALNSWSTAKRLLKPDPRYNKMP 831

Query: 121 RKEREAVWRRYADDTLRKQKLANDHKGEKHNDFKSRAT-IDAGKFPSKPR 170
           RKEREA+WRRYA+D LRKQK A D + EKH D K R++  D G++ S  R
Sbjct: 832 RKEREALWRRYAEDMLRKQKSALDQEEEKHTDVKGRSSGGDFGRYSSGTR 881

[Close]

BLAST of Cla015478 vs. NCBI nr
Match: gi|823134692|ref|XP_012467146.1| (PREDICTED: pre-mRNA-processing protein 40C [Gossypium raimondii])

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-04
Identity = 41/136 (30.15%), Postives = 64/136 (47.06%), Query Frame = 1


Query: 2   ERVRLKVRKKEAVASFQALLVESIKD--PQASWTESKVKLEKDPQGRASNPDLDSSDTEK 61
           ER   +  +K A+  F+ LL E+ +D     ++   K K   DP+  A    LD  D E 
Sbjct: 542 ERKEKRAAQKAAIEGFKQLLDEASEDIDHDTNYQTFKRKWGSDPRFEA----LDRKDREL 601

Query: 62  LFREHVKMLQERCANEFRSLLSEAFTAEVVAQVSEDGKTVLNS-WTMAKRILKPDPRYSK 121
           L  E V +L+ R A E    +  A  +   + + E G   +NS W+  K  L+ DPRY  
Sbjct: 602 LLNERVLLLK-RAAEEKARAIRAAAASSFKSMLKEKGDINVNSRWSRVKDSLRDDPRYKC 661

Query: 122 VPRKEREAVWRRYADD 135
           V  ++RE ++  Y  +
Sbjct: 662 VKHEDREVLFNEYISE 672

HSP 2 Score: 248.1 bits (632), Expect = 1.2e-62
Identity = 123/170 (72.35%), Postives = 143/170 (84.12%), Query Frame = 1


Query: 1   MERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASNPDLDSSDTEKL 60
           MERVRLKVR+KEAVASFQALLVE+IKDPQASWTESK KLEKDPQGRA+NPDLDSSD EKL
Sbjct: 561 MERVRLKVRRKEAVASFQALLVETIKDPQASWTESKPKLEKDPQGRAANPDLDSSDMEKL 620

Query: 61  FREHVKMLQERCANEFRSLLSEAFTAEVVAQVSEDGKTVLNSWTMAKRILKPDPRYSKVP 120
           FREH+KML ERC N+FR+LL+E  T +  AQ +E GKT LNSW+ AKR+LKPDPRY+K+P
Sbjct: 621 FREHIKMLFERCVNDFRALLAEVITQDATAQETEGGKTALNSWSTAKRLLKPDPRYNKMP 680

Query: 121 RKEREAVWRRYADDTLRKQKLANDHKGEKHNDFKSRAT-IDAGKFPSKPR 170
           RKEREA+WRRYA+D LRKQK A D + EKH D K R++  D G++ S  R
Sbjct: 681 RKEREALWRRYAEDMLRKQKSALDQEEEKHTDVKGRSSGGDFGRYSSGTR 730

The following BLAST results are available for this feature:

BLAST of Cla015478 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PR40C_ARATH	6.6e-50	60.65	Pre-mRNA-processing protein 40C OS=Arabidopsis thaliana GN=MED35C PE=1 SV=1	[more]
TCRG1_HUMAN	3.9e-10	28.80	Transcription elongation regulator 1 OS=Homo sapiens GN=TCERG1 PE=1 SV=2	[more]
TCRG1_MOUSE	3.9e-10	28.80	Transcription elongation regulator 1 OS=Mus musculus GN=Tcerg1 PE=1 SV=2	[more]

BLAST of Cla015478 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K978_CUCSA	2.3e-86	93.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G447710 PE=4 SV=1	[more]
A0A0A0K978_CUCSA	1.2e-02	25.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G447710 PE=4 SV=1	[more]
A0A061EFX2_THECC	9.3e-03	28.68	Pre-mRNA-processing protein 40C OS=Theobroma cacao GN=TCM_011085 PE=4 SV=1	[more]
A0A0D2Q7N4_GOSRA	1.7e-04	30.15	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G167700 PE=4 SV=1	[more]
A0A0D2MC25_GOSRA	1.7e-04	30.15	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G167700 PE=4 SV=1	[more]

BLAST of Cla015478 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659124506\|ref\|XP_008462197.1\|	5.1e-87	93.60	PREDICTED: pre-mRNA-processing protein 40C [Cucumis melo]	[more]
gi\|659124506\|ref\|XP_008462197.1\|	1.3e-02	25.64	PREDICTED: pre-mRNA-processing protein 40C [Cucumis melo]	[more]
gi\|778729430\|ref\|XP_011659583.1\|	1.8e-02	25.00	PREDICTED: pre-mRNA-processing protein 40C [Cucumis sativus]	[more]
gi\|590697013\|ref\|XP_007045322.1\|	1.3e-02	28.68	Pre-mRNA-processing protein 40C [Theobroma cacao]	[more]
gi\|823134692\|ref\|XP_012467146.1\|	2.4e-04	30.15	PREDICTED: pre-mRNA-processing protein 40C [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002713	FF_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla015478	Cla015478.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002713	FF domain	GENE3D	G3DSA:1.10.10.440		coord: 69..134 score: 7.5E-7coord: 2..68 score: 2.9
IPR002713	FF domain	PFAM	PF01846	FF	coord: 12..64 score: 3.
IPR002713	FF domain	PROFILE	PS51676	FF	coord: 69..134 score: 7.558coord: 10..67 score: 9
IPR002713	FF domain	unknown	SSF81698	FF domain	coord: 63..140 score: 1.18E-8coord: 3..72 score: 1.0
None	No IPR available	PANTHER	PTHR15377:SF3	PROTEIN TCER-1, ISOFORM A-RELATED	coord: 1..156 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla015478	Cla97C09G163800	Watermelon (97103) v2	wmwmbB041

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla015478	Wax gourd	wgowmB585
Cla015478	Cucumber (Gy14) v1	cgywmB647
Cla015478	Cucurbita maxima (Rimu)	cmawmB330
Cla015478	Cucurbita maxima (Rimu)	cmawmB848
Cla015478	Cucurbita moschata (Rifu)	cmowmB324
Cla015478	Cucurbita moschata (Rifu)	cmowmB837
Cla015478	Wild cucumber (PI 183967)	cpiwmB585
Cla015478	Melon (DHL92) v3.5.1	mewmB198
Cla015478	Watermelon (Charleston Gray)	wcgwmB007
Cla015478	Cucumber (Chinese Long) v2	cuwmB566
Cla015478	Cucurbita pepo (Zucchini)	cpewmB134
Cla015478	Cucurbita pepo (Zucchini)	cpewmB316
Cla015478	Bottle gourd (USVL1VR-Ls)	lsiwmB176
Cla015478	Cucumber (Gy14) v2	cgybwmB528
Cla015478	Melon (DHL92) v3.6.1	medwmB194
Cla015478	Silver-seed gourd	carwmB0597
Cla015478	Silver-seed gourd	carwmB0763
Cla015478	Cucumber (Chinese Long) v3	cucwmB591