Cla015422 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla015422
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr9 : 1692240 .. 1692870 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGCAGCATCATGGCAAAAAATTGGGCTATAATGGGTTTACTGGTGCTGAGCTGGGTCTCCATGGCCAATTCCGAATCTATTCAAGACTGCTACAGCACCTGCTTCGTGGTATGCGCAGTCACGCCCGGCATCTCCTTCTCCGACTGCCCCTCGAGATGCCTGCGTTCTTGCATCACCCCCTCTAATTCTTCCATGGGCAACACCGATGTCCATTCTCAACAAAAAAATCATTTCTACTGCGAGCTCGGCTGTGCAACTTCCTGGTGTACTAAGTACAGCACAAAGGATAATCCAGGTTCCAAATCATACTCTTTACTTTTACTTATATATTTTATTACTAAACATCAAATTTTATAAATCTACCCCATTATTCTAAATAATGAGTGATTAGGTGCATCTAATACATACTCCTTAAAAAAAATTCTCTTTTAAAAGAAGGGAGGGAAATGTTTAAAATAATATTTTAAAAAAATTCTCTTTAATTTGTTTTCTTAACATTTTTTATTTGGAAAATTTATTGTTTGGTTCATATGTGAAGGTATCTTTGTTTTGTTTTGTTGATGCAGCTGCCAAAGAAGTGGGGAGCTGTGTGGATTCTTGCTCTCAAACATGTTCCATGAATTGA

mRNA sequence

ATGGAGAGCAGCATCATGGCAAAAAATTGGGCTATAATGGGTTTACTGGTGCTGAGCTGGGTCTCCATGGCCAATTCCGAATCTATTCAAGACTGCTACAGCACCTGCTTCGTGGTATGCGCAGTCACGCCCGGCATCTCCTTCTCCGACTGCCCCTCGAGATGCCTGCGTTCTTGCATCACCCCCTCTAATTCTTCCATGGGCAACACCGATGTCCATTCTCAACAAAAAAATCATTTCTACTGCGAGCTCGGCTGTGCAACTTCCTGGTGTACTAAGTACAGCACAAAGGATAATCCAGCTGCCAAAGAAGTGGGGAGCTGTGTGGATTCTTGCTCTCAAACATGTTCCATGAATTGA

Coding sequence (CDS)

ATGGAGAGCAGCATCATGGCAAAAAATTGGGCTATAATGGGTTTACTGGTGCTGAGCTGGGTCTCCATGGCCAATTCCGAATCTATTCAAGACTGCTACAGCACCTGCTTCGTGGTATGCGCAGTCACGCCCGGCATCTCCTTCTCCGACTGCCCCTCGAGATGCCTGCGTTCTTGCATCACCCCCTCTAATTCTTCCATGGGCAACACCGATGTCCATTCTCAACAAAAAAATCATTTCTACTGCGAGCTCGGCTGTGCAACTTCCTGGTGTACTAAGTACAGCACAAAGGATAATCCAGCTGCCAAAGAAGTGGGGAGCTGTGTGGATTCTTGCTCTCAAACATGTTCCATGAATTGA

Protein sequence

MESSIMAKNWAIMGLLVLSWVSMANSESIQDCYSTCFVVCAVTPGISFSDCPSRCLRSCITPSNSSMGNTDVHSQQKNHFYCELGCATSWCTKYSTKDNPAAKEVGSCVDSCSQTCSMN

Homology

[Close]

BLAST of Cla015422 vs. Swiss-Prot
Match: THNL2_ARATH (Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.5e-10
Identity = 31/90 (34.44%), Postives = 49/90 (54.44%), Query Frame = 1


Query: 30  QDCYSTCFVVC-AVTPGISFSDCPSRCLRSCIT-PSNSSMGNTDVHSQQKNHFYCELGCA 89
           ++CY  C V C A +    +  CP  C + C+  PS  S+ + ++    ++ ++C+LGCA
Sbjct: 26  KECYPACLVECKAGSKFPKYLKCPFTCTKECLQQPSPPSVSSNNI---DESDYFCKLGCA 85

Query: 90  TSWCTKYSTKDNPAAKEVGSCVDSCSQTCS 118
           T  C   S+  NP  + V +CVDSCS  C+
Sbjct: 86  TYHCVSLSSIQNPNVERVSACVDSCSNKCT 112

[Close]

BLAST of Cla015422 vs. TrEMBL
Match: A0A0A0K781_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G441625 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 5.2e-37
Identity = 71/117 (60.68%), Postives = 92/117 (78.63%), Query Frame = 1


Query: 4   SIMAKNWAIMGLLVLSWVSMANSESIQDCYSTCFVVCAVTPGISFSDCPSRCLRSCITPS 63
           +++AK WA+M  L+L+ +S ANS S Q+CY+TCFV+CA+TPG++FSDCP RCL++CI PS
Sbjct: 3   NVLAKKWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPS 62

Query: 64  NSSMGNTDVH-SQQKNHFYCELGCATSWCTKYSTKDNPAAKEVGSCVDSCSQTCSMN 120
                   VH  QQ+NHF+C+LGCA S CTK+STK NP  ++VG CVDSCSQTCSMN
Sbjct: 63  FPIDDADVVHRQQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCSMN 119

[Close]

BLAST of Cla015422 vs. TrEMBL
Match: A0A059AI82_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03010 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 8.4e-19
Identity = 46/105 (43.81%), Postives = 62/105 (59.05%), Query Frame = 1


Query: 13  MGLLVLSWVSMANSESIQDCYSTCFVVCAVTPGISFSDCPSRCLRSCITPSNSSMGNTDV 72
           M  LVL      +  + QDCY  CF++CA+TPG +   C   CL+ CI P + S+   D 
Sbjct: 9   MVCLVLGLFLGQSGANFQDCYPACFILCAITPGRTLFSCSVECLKDCIIPPSDSLSLRDT 68

Query: 73  HSQQKNHFYCELGCATSWCTKYSTKDNPAAKEVGSCVDSCSQTCS 118
                  ++C+LGCA+S CT  STKDNP  K V  CV+SCS+TC+
Sbjct: 69  M------YFCKLGCASSLCTNLSTKDNPREKRVAGCVNSCSKTCT 107

[Close]

BLAST of Cla015422 vs. TrEMBL
Match: A0A061GH02_THECC (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative OS=Theobroma cacao GN=TCM_027831 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 8.4e-19
Identity = 47/108 (43.52%), Postives = 65/108 (60.19%), Query Frame = 1


Query: 12  IMGLLVLSWVSMANSESIQDCYSTCFVVCAVTPGISFSDCPSRCLRSCITPSNSSMGNTD 71
           +M  LVL  +   ++ S Q CY  CF+ C +TP  +   C  +CL+ CI PS S     D
Sbjct: 10  LMVYLVLGLLVGQSTASFQTCYMGCFIWCVITPNNTVFSCSVKCLKDCIIPSFSFPSGKD 69

Query: 72  VHSQQKNHFYCELGCATSWCTKYSTKDNPAAKEVGSCVDSCSQTCSMN 120
                   ++C+LGCATS CT  S+K+NP  ++VGSCVDSCS+TC+ N
Sbjct: 70  TQ------YFCKLGCATSLCTDLSSKENPGEEKVGSCVDSCSETCAKN 111

[Close]

BLAST of Cla015422 vs. TrEMBL
Match: A0A067E0U5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033731mg PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.4e-18
Identity = 40/90 (44.44%), Postives = 59/90 (65.56%), Query Frame = 1


Query: 28  SIQDCYSTCFVVCAVTPGISFSDCPSRCLRSCITPSNSSMGNTDVHSQQKNHFYCELGCA 87
           + ++CY TCF++C +TPG +   C ++CL+ CI P           S Q   ++C+LGCA
Sbjct: 26  AFKECYETCFIICYITPGTTLGSCAAKCLKDCIFPPK-----LHTLSLQDTEYFCKLGCA 85

Query: 88  TSWCTKYSTKDNPAAKEVGSCVDSCSQTCS 118
           TS CT  S+KDNPA ++V  CV+SCS++CS
Sbjct: 86  TSLCTNLSSKDNPAGEKVEGCVNSCSKSCS 110

[Close]

BLAST of Cla015422 vs. TrEMBL
Match: V4ST32_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026803mg PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.4e-18
Identity = 40/90 (44.44%), Postives = 59/90 (65.56%), Query Frame = 1


Query: 28  SIQDCYSTCFVVCAVTPGISFSDCPSRCLRSCITPSNSSMGNTDVHSQQKNHFYCELGCA 87
           + ++CY TCF++C +TPG +   C ++CL+ CI P           S Q   ++C+LGCA
Sbjct: 26  AFKECYETCFIICYITPGTTLGSCAAKCLKDCIFPPK-----LHTLSLQDTEYFCKLGCA 85

Query: 88  TSWCTKYSTKDNPAAKEVGSCVDSCSQTCS 118
           TS CT  S+KDNPA ++V  CV+SCS++CS
Sbjct: 86  TSLCTNLSSKDNPAGEKVEGCVNSCSKSCS 110

[Close]

BLAST of Cla015422 vs. NCBI nr
Match: gi|778729254|ref|XP_011659556.1| (PREDICTED: thionin-like protein 2 [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 7.5e-37
Identity = 71/117 (60.68%), Postives = 92/117 (78.63%), Query Frame = 1


Query: 4   SIMAKNWAIMGLLVLSWVSMANSESIQDCYSTCFVVCAVTPGISFSDCPSRCLRSCITPS 63
           +++AK WA+M  L+L+ +S ANS S Q+CY+TCFV+CA+TPG++FSDCP RCL++CI PS
Sbjct: 3   NVLAKKWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPS 62

Query: 64  NSSMGNTDVH-SQQKNHFYCELGCATSWCTKYSTKDNPAAKEVGSCVDSCSQTCSMN 120
                   VH  QQ+NHF+C+LGCA S CTK+STK NP  ++VG CVDSCSQTCSMN
Sbjct: 63  FPIDDADVVHRQQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCSMN 119

[Close]

BLAST of Cla015422 vs. NCBI nr
Match: gi|659122243|ref|XP_008461039.1| (PREDICTED: thionin-like protein 2 [Cucumis melo])

HSP 1 Score: 157.9 bits (398), Expect = 1.1e-35
Identity = 70/117 (59.83%), Postives = 92/117 (78.63%), Query Frame = 1


Query: 4   SIMAKNWAIMGLLVLSWVSMANSESIQDCYSTCFVVCAVTPGISFSDCPSRCLRSCITPS 63
           +I+AK WA+M  L+L+ +S ANS S Q+CY+TCFV+CA+TPG++FSDCP RCL++CI PS
Sbjct: 3   NILAKKWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPS 62

Query: 64  NSSMGNTDVHSQ-QKNHFYCELGCATSWCTKYSTKDNPAAKEVGSCVDSCSQTCSMN 120
                +  VH Q Q+NHF+C+LGCA S CTK+STK NP  ++V  CVDSCSQTCSM+
Sbjct: 63  FPIDDDDVVHRQKQQNHFFCKLGCAASSCTKFSTKQNPGERKVERCVDSCSQTCSMD 119

[Close]

BLAST of Cla015422 vs. NCBI nr
Match: gi|694353623|ref|XP_009358204.1| (PREDICTED: thionin-like protein 2 [Pyrus x bretschneideri])

HSP 1 Score: 110.5 bits (275), Expect = 2.0e-21
Identity = 47/109 (43.12%), Postives = 75/109 (68.81%), Query Frame = 1


Query: 10  WAIMGLLVLSWVSMANSESIQDCYSTCFVVCAVTPGISFSDCPSRCLRSCITPSNSSMGN 69
           + ++G+L+L+  S A   S + CY +CF++C +TP  S S C  +CL+ CI PS S + +
Sbjct: 13  YLVLGMLMLAGQSSA---SFKSCYESCFILCVITPNHSVSYCSFQCLKDCIIPSRSPLDH 72

Query: 70  TDVHSQQKNHFYCELGCATSWCTKYSTKDNPAAKEVGSCVDSCSQTCSM 119
           +++H    N ++C+LGCA+S C+  STK NP  ++VG CVDSCS+TC++
Sbjct: 73  SNIHKD--NVYFCKLGCASSLCSNLSTKQNPEVEKVGGCVDSCSETCTI 116

[Close]

BLAST of Cla015422 vs. NCBI nr
Match: gi|657943097|ref|XP_008353739.1| (PREDICTED: thionin-like protein 2 [Malus domestica])

HSP 1 Score: 109.4 bits (272), Expect = 4.4e-21
Identity = 47/109 (43.12%), Postives = 74/109 (67.89%), Query Frame = 1


Query: 10  WAIMGLLVLSWVSMANSESIQDCYSTCFVVCAVTPGISFSDCPSRCLRSCITPSNSSMGN 69
           + ++G+L+L+  S A   S + CY +CF++C +TP  S S C  +CL+ CI PS S   +
Sbjct: 13  YLVLGMLMLAGQSSA---SFKSCYESCFILCVITPNHSVSYCSFQCLKDCIIPSRSPFDH 72

Query: 70  TDVHSQQKNHFYCELGCATSWCTKYSTKDNPAAKEVGSCVDSCSQTCSM 119
           +++H    N ++C+LGCA+S C+  STK NP  ++VG CVDSCS+TC++
Sbjct: 73  SNIHKD--NVYFCKLGCASSLCSNLSTKQNPEVEKVGGCVDSCSKTCTI 116

[Close]

BLAST of Cla015422 vs. NCBI nr
Match: gi|702484105|ref|XP_010033893.1| (PREDICTED: thionin-like protein 2 [Eucalyptus grandis])

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-18
Identity = 46/105 (43.81%), Postives = 62/105 (59.05%), Query Frame = 1


Query: 13  MGLLVLSWVSMANSESIQDCYSTCFVVCAVTPGISFSDCPSRCLRSCITPSNSSMGNTDV 72
           M  LVL      +  + QDCY  CF++CA+TPG +   C   CL+ CI P + S+   D 
Sbjct: 9   MVCLVLGLFLGQSGANFQDCYPACFILCAITPGRTLFSCSVECLKDCIIPPSDSLSLRDT 68

Query: 73  HSQQKNHFYCELGCATSWCTKYSTKDNPAAKEVGSCVDSCSQTCS 118
                  ++C+LGCA+S CT  STKDNP  K V  CV+SCS+TC+
Sbjct: 69  M------YFCKLGCASSLCTNLSTKDNPREKRVAGCVNSCSKTCT 107

The following BLAST results are available for this feature:

BLAST of Cla015422 vs. Swiss-Prot


Match Name	E-value	Identity	Description
THNL2_ARATH	3.5e-10	34.44	Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1	[more]

BLAST of Cla015422 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K781_CUCSA	5.2e-37	60.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G441625 PE=4 SV=1	[more]
A0A059AI82_EUCGR	8.4e-19	43.81	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03010 PE=4 SV=1	[more]
A0A061GH02_THECC	8.4e-19	43.52	To encode a PR protein, Belongs to the plant thionin family with the following m...	[more]
A0A067E0U5_CITSI	5.4e-18	44.44	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033731mg PE=4 SV=1	[more]
V4ST32_9ROSI	5.4e-18	44.44	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026803mg PE=4 SV=1	[more]

BLAST of Cla015422 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778729254\|ref\|XP_011659556.1\|	7.5e-37	60.68	PREDICTED: thionin-like protein 2 [Cucumis sativus]	[more]
gi\|659122243\|ref\|XP_008461039.1\|	1.1e-35	59.83	PREDICTED: thionin-like protein 2 [Cucumis melo]	[more]
gi\|694353623\|ref\|XP_009358204.1\|	2.0e-21	43.12	PREDICTED: thionin-like protein 2 [Pyrus x bretschneideri]	[more]
gi\|657943097\|ref\|XP_008353739.1\|	4.4e-21	43.12	PREDICTED: thionin-like protein 2 [Malus domestica]	[more]
gi\|702484105\|ref\|XP_010033893.1\|	1.2e-18	43.81	PREDICTED: thionin-like protein 2 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla015422	Cla015422.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36312	FAMILY NOT NAMED	coord: 1..118 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla015422	Csa7G440620	Cucumber (Chinese Long) v2	cuwmB566
Cla015422	CSPI07G21170	Wild cucumber (PI 183967)	cpiwmB585

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla015422	Wax gourd	wgowmB167
Cla015422	Wax gourd	wgowmB585
Cla015422	Wax gourd	wgowmB651
Cla015422	Watermelon (97103) v1	wmwmB013
Cla015422	Watermelon (97103) v1	wmwmB034
Cla015422	Cucurbita maxima (Rimu)	cmawmB043
Cla015422	Cucurbita maxima (Rimu)	cmawmB087
Cla015422	Cucurbita maxima (Rimu)	cmawmB220
Cla015422	Cucurbita maxima (Rimu)	cmawmB328
Cla015422	Cucurbita maxima (Rimu)	cmawmB405
Cla015422	Cucurbita moschata (Rifu)	cmowmB035
Cla015422	Cucurbita moschata (Rifu)	cmowmB077
Cla015422	Cucurbita moschata (Rifu)	cmowmB208
Cla015422	Cucurbita moschata (Rifu)	cmowmB322
Cla015422	Cucurbita moschata (Rifu)	cmowmB399
Cla015422	Melon (DHL92) v3.5.1	mewmB198
Cla015422	Melon (DHL92) v3.5.1	mewmB344
Cla015422	Watermelon (Charleston Gray)	wcgwmB007
Cla015422	Watermelon (Charleston Gray)	wcgwmB355
Cla015422	Cucurbita pepo (Zucchini)	cpewmB131
Cla015422	Cucurbita pepo (Zucchini)	cpewmB313
Cla015422	Cucurbita pepo (Zucchini)	cpewmB346
Cla015422	Cucurbita pepo (Zucchini)	cpewmB536
Cla015422	Bottle gourd (USVL1VR-Ls)	lsiwmB176
Cla015422	Bottle gourd (USVL1VR-Ls)	lsiwmB426
Cla015422	Cucumber (Gy14) v2	cgybwmB174
Cla015422	Cucumber (Gy14) v2	cgybwmB528
Cla015422	Melon (DHL92) v3.6.1	medwmB194
Cla015422	Melon (DHL92) v3.6.1	medwmB342
Cla015422	Silver-seed gourd	carwmB0117
Cla015422	Silver-seed gourd	carwmB0123
Cla015422	Silver-seed gourd	carwmB0187
Cla015422	Silver-seed gourd	carwmB1028
Cla015422	Cucumber (Chinese Long) v3	cucwmB198
Cla015422	Cucumber (Chinese Long) v3	cucwmB591
Cla015422	Watermelon (97103) v2	wmwmbB037
Cla015422	Watermelon (97103) v2	wmwmbB041