Cla015128 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla015128
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Late embryogenesis abundant protein (LEA) family protein (AHRD V1 ***- F4IYB7_ARATH)
Location	Chr9 : 4125993 .. 4126202 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTGGTTGACCCGATTCCTAACGGCGGTGGTTTTTCTCGCCATCGGAGTAGTATTTTCGCCGGAGACCTTCGGATCGAACTCCAAAACCTTCAATGCGCCGAAGCTTTCGATGTATCTCAAATTGGCTCATCTTCTCAGCTACTCCACCGCCTGGGGCGCCGCTCTCTGGGTCACCTTCATCGGCGGCATCATCATGTTCAAGTAA

mRNA sequence

ATGGCGTGGTTGACCCGATTCCTAACGGCGGTGGTTTTTCTCGCCATCGGAGTAGTATTTTCGCCGGAGACCTTCGGATCGAACTCCAAAACCTTCAATGCGCCGAAGCTTTCGATGTATCTCAAATTGGCTCATCTTCTCAGCTACTCCACCGCCTGGGGCGCCGCTCTCTGGGTCACCTTCATCGGCGGCATCATCATGTTCAAGTAA

Coding sequence (CDS)

ATGGCGTGGTTGACCCGATTCCTAACGGCGGTGGTTTTTCTCGCCATCGGAGTAGTATTTTCGCCGGAGACCTTCGGATCGAACTCCAAAACCTTCAATGCGCCGAAGCTTTCGATGTATCTCAAATTGGCTCATCTTCTCAGCTACTCCACCGCCTGGGGCGCCGCTCTCTGGGTCACCTTCATCGGCGGCATCATCATGTTCAAGTAA

Protein sequence

MAWLTRFLTAVVFLAIGVVFSPETFGSNSKTFNAPKLSMYLKLAHLLSYSTAWGAALWVTFIGGIIMFK

Homology

[Close]

BLAST of Cla015128 vs. TrEMBL
Match: A0A0A0K6C4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G407560 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 7.2e-31
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MAWLTRFLTAVVFLAIGVVFSPETFGSNSKTFNAPKLSMYLKLAHLLSYSTAWGAALWVT 60
          MAWLTRFLTAVVFLAIGVVFSPETFGSNSKTFNAPKLSMYLKLAHLLSYSTAWGA+LWVT
Sbjct: 1  MAWLTRFLTAVVFLAIGVVFSPETFGSNSKTFNAPKLSMYLKLAHLLSYSTAWGASLWVT 60

Query: 61 FIGGIIMFK 70
          FIGGIIMFK
Sbjct: 61 FIGGIIMFK 69

[Close]

BLAST of Cla015128 vs. TrEMBL
Match: W9R956_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001912 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 9.2e-26
Identity = 58/69 (84.06%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 1  MAWLTRFLTAVVFLAIGVVFSPETFGSNSKTFNAPKLSMYLKLAHLLSYSTAWGAALWVT 60
          M WLTRFLTAVVFLA+GV+FSPETFGS S   N+PKLS YLKLAHLLS+STAWGAALWVT
Sbjct: 1  MGWLTRFLTAVVFLAVGVIFSPETFGSKSDGLNSPKLSTYLKLAHLLSFSTAWGAALWVT 60

Query: 61 FIGGIIMFK 70
          FIGGII+FK
Sbjct: 61 FIGGIILFK 69

[Close]

BLAST of Cla015128 vs. TrEMBL
Match: A0A0D2TDS7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G123500 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-23
Identity = 54/69 (78.26%), Postives = 61/69 (88.41%), Query Frame = 1


Query: 1  MAWLTRFLTAVVFLAIGVVFSPETFGSNSKTFNAPKLSMYLKLAHLLSYSTAWGAALWVT 60
          MAW+TRFLTAV FLA+GV+FSPETFGS S    +P LS ++KLAHLLS+STAWGAALWVT
Sbjct: 1  MAWITRFLTAVAFLAVGVIFSPETFGSKSDGTKSPNLSSFIKLAHLLSFSTAWGAALWVT 60

Query: 61 FIGGIIMFK 70
          FIGGIIMFK
Sbjct: 61 FIGGIIMFK 69

[Close]

BLAST of Cla015128 vs. TrEMBL
Match: A0A0D2QRC8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G123500 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-23
Identity = 54/69 (78.26%), Postives = 61/69 (88.41%), Query Frame = 1


Query: 1  MAWLTRFLTAVVFLAIGVVFSPETFGSNSKTFNAPKLSMYLKLAHLLSYSTAWGAALWVT 60
          MAW+TRFLTAV FLA+GV+FSPETFGS S    +P LS ++KLAHLLS+STAWGAALWVT
Sbjct: 1  MAWITRFLTAVAFLAVGVIFSPETFGSKSDGTKSPNLSSFIKLAHLLSFSTAWGAALWVT 60

Query: 61 FIGGIIMFK 70
          FIGGIIMFK
Sbjct: 61 FIGGIIMFK 69

[Close]

BLAST of Cla015128 vs. TrEMBL
Match: A0A061DT38_THECC (Late embryogenesis abundant protein (LEA) family protein OS=Theobroma cacao GN=TCM_004782 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-23
Identity = 54/69 (78.26%), Postives = 62/69 (89.86%), Query Frame = 1


Query: 1  MAWLTRFLTAVVFLAIGVVFSPETFGSNSKTFNAPKLSMYLKLAHLLSYSTAWGAALWVT 60
          MAW+TRFLTAV FLA+GV+FSPETFGS     N+PKLS ++KLAHLLS++TAWGAALWVT
Sbjct: 1  MAWITRFLTAVAFLAVGVIFSPETFGSKLDGPNSPKLSTFIKLAHLLSFATAWGAALWVT 60

Query: 61 FIGGIIMFK 70
          FIGGIIMFK
Sbjct: 61 FIGGIIMFK 69

[Close]

BLAST of Cla015128 vs. NCBI nr
Match: gi|778728219|ref|XP_011659389.1| (PREDICTED: transmembrane protein 205 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 1.0e-30
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MAWLTRFLTAVVFLAIGVVFSPETFGSNSKTFNAPKLSMYLKLAHLLSYSTAWGAALWVT 60
          MAWLTRFLTAVVFLAIGVVFSPETFGSNSKTFNAPKLSMYLKLAHLLSYSTAWGA+LWVT
Sbjct: 1  MAWLTRFLTAVVFLAIGVVFSPETFGSNSKTFNAPKLSMYLKLAHLLSYSTAWGASLWVT 60

Query: 61 FIGGIIMFK 70
          FIGGIIMFK
Sbjct: 61 FIGGIIMFK 69

[Close]

BLAST of Cla015128 vs. NCBI nr
Match: gi|659101226|ref|XP_008451494.1| (PREDICTED: LOW QUALITY PROTEIN: transmembrane protein 205 [Cucumis melo])

HSP 1 Score: 139.4 bits (350), Expect = 2.3e-30
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MAWLTRFLTAVVFLAIGVVFSPETFGSNSKTFNAPKLSMYLKLAHLLSYSTAWGAALWVT 60
          MAWLTRFLTAVVFLA+GVVFSPETFGSNSKTFNAPKLSMYLKLAHLLSYSTAWGA+LWVT
Sbjct: 1  MAWLTRFLTAVVFLAMGVVFSPETFGSNSKTFNAPKLSMYLKLAHLLSYSTAWGASLWVT 60

Query: 61 FIGGIIMFK 70
          FIGGIIMFK
Sbjct: 61 FIGGIIMFK 69

[Close]

BLAST of Cla015128 vs. NCBI nr
Match: gi|703094572|ref|XP_010095303.1| (hypothetical protein L484_001912 [Morus notabilis])

HSP 1 Score: 123.6 bits (309), Expect = 1.3e-25
Identity = 58/69 (84.06%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 1  MAWLTRFLTAVVFLAIGVVFSPETFGSNSKTFNAPKLSMYLKLAHLLSYSTAWGAALWVT 60
          M WLTRFLTAVVFLA+GV+FSPETFGS S   N+PKLS YLKLAHLLS+STAWGAALWVT
Sbjct: 1  MGWLTRFLTAVVFLAVGVIFSPETFGSKSDGLNSPKLSTYLKLAHLLSFSTAWGAALWVT 60

Query: 61 FIGGIIMFK 70
          FIGGII+FK
Sbjct: 61 FIGGIILFK 69

[Close]

BLAST of Cla015128 vs. NCBI nr
Match: gi|763774704|gb|KJB41827.1| (hypothetical protein B456_007G123500 [Gossypium raimondii])

HSP 1 Score: 116.7 bits (291), Expect = 1.6e-23
Identity = 54/69 (78.26%), Postives = 61/69 (88.41%), Query Frame = 1


Query: 1  MAWLTRFLTAVVFLAIGVVFSPETFGSNSKTFNAPKLSMYLKLAHLLSYSTAWGAALWVT 60
          MAW+TRFLTAV FLA+GV+FSPETFGS S    +P LS ++KLAHLLS+STAWGAALWVT
Sbjct: 1  MAWITRFLTAVAFLAVGVIFSPETFGSKSDGTKSPNLSSFIKLAHLLSFSTAWGAALWVT 60

Query: 61 FIGGIIMFK 70
          FIGGIIMFK
Sbjct: 61 FIGGIIMFK 69

[Close]

BLAST of Cla015128 vs. NCBI nr
Match: gi|728841771|gb|KHG21214.1| (Transmembrane protein [Gossypium arboreum])

HSP 1 Score: 116.7 bits (291), Expect = 1.6e-23
Identity = 54/69 (78.26%), Postives = 61/69 (88.41%), Query Frame = 1


Query: 1  MAWLTRFLTAVVFLAIGVVFSPETFGSNSKTFNAPKLSMYLKLAHLLSYSTAWGAALWVT 60
          MAW+TRFLTAV FLA+GV+FSPETFGS S    +P LS ++KLAHLLS+STAWGAALWVT
Sbjct: 1  MAWITRFLTAVAFLAVGVIFSPETFGSQSDGTKSPNLSSFIKLAHLLSFSTAWGAALWVT 60

Query: 61 FIGGIIMFK 70
          FIGGIIMFK
Sbjct: 61 FIGGIIMFK 69

The following BLAST results are available for this feature:

BLAST of Cla015128 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6C4_CUCSA	7.2e-31	98.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G407560 PE=4 SV=1	[more]
W9R956_9ROSA	9.2e-26	84.06	Uncharacterized protein OS=Morus notabilis GN=L484_001912 PE=4 SV=1	[more]
A0A0D2TDS7_GOSRA	1.1e-23	78.26	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G123500 PE=4 SV=1	[more]
A0A0D2QRC8_GOSRA	1.1e-23	78.26	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G123500 PE=4 SV=1	[more]
A0A061DT38_THECC	1.1e-23	78.26	Late embryogenesis abundant protein (LEA) family protein OS=Theobroma cacao GN=T...	[more]

BLAST of Cla015128 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778728219\|ref\|XP_011659389.1\|	1.0e-30	98.55	PREDICTED: transmembrane protein 205 [Cucumis sativus]	[more]
gi\|659101226\|ref\|XP_008451494.1\|	2.3e-30	97.10	PREDICTED: LOW QUALITY PROTEIN: transmembrane protein 205 [Cucumis melo]	[more]
gi\|703094572\|ref\|XP_010095303.1\|	1.3e-25	84.06	hypothetical protein L484_001912 [Morus notabilis]	[more]
gi\|763774704\|gb\|KJB41827.1\|	1.6e-23	78.26	hypothetical protein B456_007G123500 [Gossypium raimondii]	[more]
gi\|728841771\|gb\|KHG21214.1\|	1.6e-23	78.26	Transmembrane protein [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0046034	ATP metabolic process
biological_process	GO:0015992	proton transport
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU09357	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU36595	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU38603	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU57054	watermelon EST collection version 2.0	transcribed_cluster
WMU62596	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla015128	Cla015128.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU09357	WMU09357	transcribed_cluster
WMU38603	WMU38603	transcribed_cluster
WMU57054	WMU57054	transcribed_cluster
WMU36595	WMU36595	transcribed_cluster
WMU62596	WMU62596	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23241	LATE EMBRYOGENESIS ABUNDANT PLANTS LEA-RELATED	coord: 19..69 score: 4.2
None	No IPR available	PANTHER	PTHR23241:SF55	SUBFAMILY NOT NAMED	coord: 19..69 score: 4.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla015128	Cla97C09G167680	Watermelon (97103) v2	wmwmbB041
Cla015128	Csa7G407560	Cucumber (Chinese Long) v2	cuwmB568
Cla015128	MELO3C015935	Melon (DHL92) v3.5.1	mewmB184
Cla015128	ClCG09G005210	Watermelon (Charleston Gray)	wcgwmB007
Cla015128	CSPI07G18040	Wild cucumber (PI 183967)	cpiwmB587
Cla015128	Cucsa.205130	Cucumber (Gy14) v1	cgywmB402
Cla015128	CmaCh17G010410	Cucurbita maxima (Rimu)	cmawmB328
Cla015128	CmaCh08G004590	Cucurbita maxima (Rimu)	cmawmB856
Cla015128	CmoCh17G010160	Cucurbita moschata (Rifu)	cmowmB322
Cla015128	CmoCh08G004490	Cucurbita moschata (Rifu)	cmowmB843
Cla015128	Lsi02G024630	Bottle gourd (USVL1VR-Ls)	lsiwmB175
Cla015128	Cp4.1LG12g06090	Cucurbita pepo (Zucchini)	cpewmB131
Cla015128	Cp4.1LG17g07310	Cucurbita pepo (Zucchini)	cpewmB311
Cla015128	CsGy7G016500	Cucumber (Gy14) v2	cgybwmB530
Cla015128	MELO3C015935.2	Melon (DHL92) v3.6.1	medwmB181
Cla015128	Carg07132	Silver-seed gourd	carwmB0106
Cla015128	Carg13374	Silver-seed gourd	carwmB0450
Cla015128	CsaV3_7G029860	Cucumber (Chinese Long) v3	cucwmB593
Cla015128	Bhi09G000801	Wax gourd	wgowmB586

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla015128	Silver-seed gourd	carwmB0449
Cla015128	Silver-seed gourd	carwmB0757
Cla015128	Silver-seed gourd	carwmB0815
Cla015128	Cucumber (Chinese Long) v3	cucwmB297
Cla015128	Watermelon (97103) v2	wmwmbB011
Cla015128	Watermelon (97103) v2	wmwmbB031
Cla015128	Wax gourd	wgowmB003
Cla015128	Watermelon (97103) v1	wmwmB008
Cla015128	Watermelon (97103) v1	wmwmB038
Cla015128	Cucumber (Gy14) v1	cgywmB113
Cla015128	Cucurbita maxima (Rimu)	cmawmB224
Cla015128	Cucurbita maxima (Rimu)	cmawmB407
Cla015128	Cucurbita maxima (Rimu)	cmawmB855
Cla015128	Cucurbita moschata (Rifu)	cmowmB210
Cla015128	Cucurbita moschata (Rifu)	cmowmB329
Cla015128	Cucurbita moschata (Rifu)	cmowmB400
Cla015128	Wild cucumber (PI 183967)	cpiwmB288
Cla015128	Melon (DHL92) v3.5.1	mewmB490
Cla015128	Watermelon (Charleston Gray)	wcgwmB047
Cla015128	Watermelon (Charleston Gray)	wcgwmB318
Cla015128	Cucumber (Chinese Long) v2	cuwmB287
Cla015128	Cucurbita pepo (Zucchini)	cpewmB139
Cla015128	Cucurbita pepo (Zucchini)	cpewmB537
Cla015128	Bottle gourd (USVL1VR-Ls)	lsiwmB234
Cla015128	Melon (DHL92) v3.6.1	medwmB477