Cla014873 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla014873
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Charged multivesicular body protein 2b (AHRD V1 **-- B6T5E0_MAIZE); contains Interpro domain(s) IPR005024 Snf7
Location	Chr9 : 7006669 .. 7010018 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGCTCAGACTTCCGTTGCTGCTGGCATGAAGAGTGCCAGTAAAGCAATGTCAGCTATGAATAAGGTAAGTAGACATGAAAAGAAAAAGAAAAAAAAAAAAAAAACCTCTTACATATGCTAAAATTTCTGTGATTAACAGACAGAATAGTAGCCAATGTTTTCAAAGCATATAACCTTAAGGTTAGAGGCAATAAAAAGGTGTTGCTTGGGTGGAGCAAGTTAACATAAATAAGTACGTGAAAAGAAATTATAGATAGTAGTAATTTGGAAAATAAAATAGGGCGGTTTGATGTCTAAATCAGATGGTATAATAAATTGTTTTTGGATGATTAATACTCCAAAAGTTTAGCAGGGCCGTATATGATGTCCAATCTAAAGCCTGCTGGAATGCCAAATATTAAATAAAATATTAAATAGATTAATTATAAAAAAAACTTGGGTTTTTAAGTTAATTGCCTTCACTATGGCATCATCATATACCAAGAAGAGGATGTCTGATGGTGAGGCTACCTTAGAGAAACCTACTCATGAAGGGTGTCTCTTCTGTTGGTTTCAGTTATTTTATTCCCTCAATCATGTGTCTGATATACTTCTCGAAAAAAGAAACTGTAATATTATATATCCACCCATTGAGCTTAATGTTTTATAATTATGGTTATTTTAAATTTGTATTTTTTACCACAATCATCTGTAGCAAATGAATCCCGTGAAGCAAGCGAAGGTCATTAGAGAATTTCAGAAGCAGTCTGCACAGATGGATATGACCGTAAGATCCTGCTCTTATTACCTTTATTTTTCCATATATACATACACAAAGAAGCTCTTGAATTTGCTAGCTTTGTTTATTTTGTGCTTCTTACATAGCACAATAACCTGTAACATCTTAGCCTCCCTATTATACTTTTTCTTTTTCTTTTCTCCTTTCATTGTTGGCTGAAATGACCATAGCTGACAATATTTGGCGCATCATAAATCCAAGGATATTAATGAAGGAAATGATAAAATACTAGCATGTCAATCTCTCACTTGCATGAAGGGGATAAATTTGGACTCATATTCATAATGGAAATGTCAAGCTCTTAAGTTTGTATAAATGTTGATAAAAATATTGATCACATGTAGAAATAGACTGATAGTAAAAAATAAATAACAAAAGCTACCACTACTTATTGAATTATTTGAATTAAGAAATAAAAAATGAACACCTTTTTTAGTTAGTTGTAAATGATCACTCTTGGTATTTGTATTCATGTGGTTGACAATTTTGTTGACGTTGCAAATGAAGAAAGATGTTGTCTATTCAGTATAGATATCAAAACATATAAATTTATAGAAATATCAGTTAAAATGCAACCGGTATCTTACTTCATAGCCATAATCTTATATATATATATATAAATGTATTTCTGTCATTCTCGTTTCATGTTTCAATTTCTGGATCCTTACGGTCTCACATTGGTGGCAGACGGAGATGATTTCAGATGCTATAGATGATGCCCTGGATGATGACGAGGCAGAAGAAGAAACTGAAGATCTAACGAATCAGGTAAGCTTCTCTAGCTGCCATCATTTATTTCTTCCAACTGGGGTGGAGCTGGAGATGTAGTAAAAAGTTTGCTTAAAACTGTTTGTAATAGCCACTAATACGAAGTACGTAATTTTGGAACTCTGGCGTTTATCTATTGCTTTGTGATTGTGTGAATTGAGTTTAAAGTCATAAGCCTGAGTTTAAGAGGTCAAAATGTCTACCATTGTTAACATTTCTCCATGAAATTAATGTGATACTAGCTGTGCTAAATATAAGGACTCTTATATCCATCTCGATGTCAGATTTGCTATGACTTATGATTTGCACAGTTAAGCACCGAACACATAAGGGACCCTAGCGAGGTTTGGTCCTTCTTGAGGGCCTGGTTTTGAAGACTTTTTATAATTATTCTCTAAGCAACATCTTACTTAGTTGGTAACACTTTCTCTTGTGGGGTTTTTCCTTTAGGTTTTGTTTTTCTATATGTCCTTGTATTTTTTTATTCTCAATGAAAGCAGTTGTTTCTACTAAAAAGAAAAGAAGAACCGAACGCAAAAAAGCTTCTCATATCTTACTTGAACAAAATCTGTTCTATAGGTGGTACTACCTTTTTTTTTTTTTTTTCAAACGGAAACATAACTTAAGTTTTGTAAACTTTTTTGTAGATTGTACAATTGTATCCTTGAGTTCTAAAAGTAACCCTACTTCCCCCTTCTGGACAGGTACTCGATGAAATCGGCGTTGATGTTGCCTCACAGGTATGTTAAAATTGGTTTTACATCTTTTTGAAGTCTTGTCAACTGCATTGCATATAATAAAAGTAATTGGATCATATGTGTATTTGATTCAGCTTTCAACAGCTCCAAAAGGAAAAATTGCGTCAAAGAATACTGAGGGTGTCAGTAGGTATGTAGTATTATTTCCCATGAATATGCATCTTCTTACATAAATCAAAAGAAAATTTATTGGTTATACCTTAAAATAGTACAAGGTTTTGATCCTCTTTTCTGTTTTCTGATTTAAATTACTTGTGAGATTTTCACATTATTTAAATAAAATGTCACATCCTTGGCCTCCTTTGCTGCATCTACAAGTAACTTGCTATATTGGACTTCTTTTTTTATTGAACATTTATGACAAAGGTATCTAACAGGCTTTGAGCAAAAGAATAGAGGCAATTACAGAACTTTTTACAGAACTTTTAAAAAGACTGTGGACCCGATTGGATTAATTTTAAAAGATAAGGATTATGATTGGAACTTAACTAAATTATTTCAATGGAAAAGATGGTATTATTTCTTTAATGGCTGGTATAATTATGCAAGTTTACATTTCTTGGTCAAATAACCGTAGTAGCTGGATTAAGATAATGTGCAATTAGGATATAAAATGATTATGGAAATCGTATACTCATAAGTTGTTCCTTATTTATTCAGACCCCACCCCGGTAACTCTTTCGGTTTTGGTTGTTTGTTTGTAAAAGTTTAGTGTATTTCTTCTTAATTTTCATAATGGTTTGCATCTTTTTTAAAAAAAAATAGTTGAATTCTTAGCCAAATTTCAACAAAGACAAGTTTTTAAAAATTGCTTTTTTTGGTTTTGGAAAATATTGGTAAAAAGTAGATAACAAAGCAAGAAGTTTAGAGGTGGAAAGGGTGTTTATAGGCTTAATTTTCACTAACTAAAAATTGAATGGTTTCCGGACGGAGCCTTATTTTTTTCCCTTTTTCAAATAATGATCTATTTTGTTGCTGATATTTTGCAGTTCAGGTATCGACGAGCTCGAAAAGCGATTGGCTGCTCTTCGAAATCCTTGA

mRNA sequence

ATGCATGCTCAGACTTCCGTTGCTGCTGGCATGAAGAGTGCCAGTAAAGCAATGTCAGCTATGAATAAGCAAATGAATCCCGTGAAGCAAGCGAAGGTCATTAGAGAATTTCAGAAGCAGTCTGCACAGATGGATATGACCACGGAGATGATTTCAGATGCTATAGATGATGCCCTGGATGATGACGAGGCAGAAGAAGAAACTGAAGATCTAACGAATCAGGTACTCGATGAAATCGGCGTTGATGTTGCCTCACAGCTTTCAACAGCTCCAAAAGGAAAAATTGCGTCAAAGAATACTGAGGGTGTCAGTAGTTCAGGTATCGACGAGCTCGAAAAGCGATTGGCTGCTCTTCGAAATCCTTGA

Coding sequence (CDS)

ATGCATGCTCAGACTTCCGTTGCTGCTGGCATGAAGAGTGCCAGTAAAGCAATGTCAGCTATGAATAAGCAAATGAATCCCGTGAAGCAAGCGAAGGTCATTAGAGAATTTCAGAAGCAGTCTGCACAGATGGATATGACCACGGAGATGATTTCAGATGCTATAGATGATGCCCTGGATGATGACGAGGCAGAAGAAGAAACTGAAGATCTAACGAATCAGGTACTCGATGAAATCGGCGTTGATGTTGCCTCACAGCTTTCAACAGCTCCAAAAGGAAAAATTGCGTCAAAGAATACTGAGGGTGTCAGTAGTTCAGGTATCGACGAGCTCGAAAAGCGATTGGCTGCTCTTCGAAATCCTTGA

Protein sequence

MHAQTSVAAGMKSASKAMSAMNKQMNPVKQAKVIREFQKQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDVASQLSTAPKGKIASKNTEGVSSSGIDELEKRLAALRNP

Homology

[Close]

BLAST of Cla014873 vs. Swiss-Prot
Match: VPS2C_ARATH (Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 7.4e-48
Identity = 96/119 (80.67%), Postives = 107/119 (89.92%), Query Frame = 1


Query: 1   MHAQTSVAAGMKSASKAMSAMNKQMNPVKQAKVIREFQKQSAQMDMTTEMISDAIDDALD 60
           MHA TSVAAGM+ A+KAM+AM+K M+P KQAKV+REFQKQSAQMDMTTEM+SD+IDDALD
Sbjct: 92  MHAHTSVAAGMQGATKAMAAMSKNMDPAKQAKVMREFQKQSAQMDMTTEMMSDSIDDALD 151

Query: 61  DDEAEEETEDLTNQVLDEIGVDVASQLSTAPKGKIASKNTEGVSSSGIDELEKRLAALR 120
           +DEAE+ETEDLTNQVLDEIG+D+ASQLS+APKGKI  K  E V SSGIDELEKRLAALR
Sbjct: 152 NDEAEDETEDLTNQVLDEIGIDIASQLSSAPKGKIGGKKAEDVGSSGIDELEKRLAALR 210

[Close]

BLAST of Cla014873 vs. Swiss-Prot
Match: VPS2B_ARATH (Vacuolar protein sorting-associated protein 2 homolog 2 OS=Arabidopsis thaliana GN=VPS2.2 PE=1 SV=2)

HSP 1 Score: 162.9 bits (411), Expect = 2.1e-39
Identity = 86/129 (66.67%), Postives = 102/129 (79.07%), Query Frame = 1


Query: 1   MHAQTSVAAGMKSASKAMSAMNKQMNPVKQAKVIREFQKQSAQMDMTTEMISDAIDDALD 60
           ++A TS+++GMK A+KAM AMNKQM P KQAKVI++FQKQSAQ+DMT EM+S+AID+ LD
Sbjct: 92  LYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIEMMSEAIDETLD 151

Query: 61  DDEAEEETEDLTNQVLDEIGVDVASQLSTAPKGKIASK----------NTEGVSSSGIDE 120
            DEAEEETEDLTNQVLDEIGV VASQLS+APKG+IA+K            +   SS +DE
Sbjct: 152 KDEAEEETEDLTNQVLDEIGVGVASQLSSAPKGRIATKTAAPPASTAATNKNSESSEVDE 211

[Close]

BLAST of Cla014873 vs. Swiss-Prot
Match: VPS2A_ARATH (Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=1 SV=2)

HSP 1 Score: 104.4 bits (259), Expect = 9.1e-22
Identity = 58/125 (46.40%), Postives = 80/125 (64.00%), Query Frame = 1


Query: 6   SVAAGMKSASKAMSAMNKQMNPVKQAKVIREFQKQSAQMDMTTEMISDAIDDALDDDEAE 65
           ++   MK  +KAM  MN+QMN     K+++EF++Q+ +M+M +E++ DAIDDAL+ DE E
Sbjct: 99  AMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEE 158

Query: 66  EETEDLTNQVLDEIGVDVASQLSTAPKGKI---ASKN-------TEGVSSSGID-ELEKR 120
           EETEDL +QVLDEIG+D+  +L  AP G +   A+KN       T    S GID +L+ R
Sbjct: 159 EETEDLVSQVLDEIGIDINQELVNAPSGAVAVPAAKNKVVQAEATGAEDSGGIDSDLQAR 218

[Close]

BLAST of Cla014873 vs. Swiss-Prot
Match: CH2BB_XENLA (Charged multivesicular body protein 2b-B OS=Xenopus laevis GN=chmp2b-b PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-21
Identity = 49/120 (40.83%), Postives = 78/120 (65.00%), Query Frame = 1


Query: 1   MHAQTSVAAGMKSASKAMSAMNKQMNPVKQAKVIREFQKQSAQMDMTTEMISDAIDDALD 60
           M +Q  +A  M + +K M A+NK+M+P K  + ++ FQK++ +M+MT EMI+D +DD  D
Sbjct: 92  MSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTDEMINDTLDDIFD 151

Query: 61  DDEAEEETEDLTNQVLDEIGVDVASQLSTAPKGKIASKNTEGVSSSGI--DELEKRLAAL 119
             E EEE++D+ NQVLDEIG++++ +++ AP       +T    S GI  +E+E++L AL
Sbjct: 152 ASEDEEESQDIVNQVLDEIGIEISGKMAKAPSAAKGLPSTSAAKSKGISDEEIERQLKAL 211

[Close]

BLAST of Cla014873 vs. Swiss-Prot
Match: CHM2B_XENTR (Charged multivesicular body protein 2b OS=Xenopus tropicalis GN=chmp2b PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-21
Identity = 49/120 (40.83%), Postives = 79/120 (65.83%), Query Frame = 1


Query: 1   MHAQTSVAAGMKSASKAMSAMNKQMNPVKQAKVIREFQKQSAQMDMTTEMISDAIDDALD 60
           M +Q  +A  M + +K M A+NK+M+P K  + ++ FQK++ +M+MT EMI+D +DD  D
Sbjct: 92  MSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFD 151

Query: 61  DDEAEEETEDLTNQVLDEIGVDVASQLSTAPKGKIASKNTEGVSSSGI--DELEKRLAAL 119
             + EEE++D+ NQVLDEIG++++ +++ AP       +T    SSGI  +E+E++L AL
Sbjct: 152 ASDDEEESQDIVNQVLDEIGIEISGKMAKAPSAAKGLPSTSASKSSGISDEEIERQLKAL 211

[Close]

BLAST of Cla014873 vs. TrEMBL
Match: A0A0A0K5C0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G372290 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 4.6e-57
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 1


Query: 1   MHAQTSVAAGMKSASKAMSAMNKQMNPVKQAKVIREFQKQSAQMDMTTEMISDAIDDALD 60
           MHAQTSVAAGMKSASKAMSAMNKQMNPVKQAKVIREFQKQSAQMDMTTEMISDAIDDALD
Sbjct: 92  MHAQTSVAAGMKSASKAMSAMNKQMNPVKQAKVIREFQKQSAQMDMTTEMISDAIDDALD 151

Query: 61  DDEAEEETEDLTNQVLDEIGVDVASQLSTAPKGKIASKNTEGVSSSGIDELEKRLAALRN 120
           DDEAEEETEDLTNQVLDEIGVDVASQLSTAPKG+IASKNTEGV SSGIDELEKRLAALRN
Sbjct: 152 DDEAEEETEDLTNQVLDEIGVDVASQLSTAPKGRIASKNTEGVGSSGIDELEKRLAALRN 211

Query: 121 P 122
           P
Sbjct: 212 P 212

[Close]

BLAST of Cla014873 vs. TrEMBL
Match: A0A0D2Q0G4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G179400 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.7e-51
Identity = 107/121 (88.43%), Postives = 114/121 (94.21%), Query Frame = 1


Query: 1   MHAQTSVAAGMKSASKAMSAMNKQMNPVKQAKVIREFQKQSAQMDMTTEMISDAIDDALD 60
           MHAQ+SVA GMK A+KAMSAMNKQM P KQAKVIREFQKQS QMDMTTEM+SDAIDDALD
Sbjct: 77  MHAQSSVAVGMKGATKAMSAMNKQMAPEKQAKVIREFQKQSGQMDMTTEMMSDAIDDALD 136

Query: 61  DDEAEEETEDLTNQVLDEIGVDVASQLSTAPKGKIASKNTEGVSSSGIDELEKRLAALRN 120
           DDEAE+ETEDLTNQVLDEIGVDVASQLS+APKG+IA KNTEGV SSG+DELEKRLAALRN
Sbjct: 137 DDEAEDETEDLTNQVLDEIGVDVASQLSSAPKGRIAGKNTEGVGSSGVDELEKRLAALRN 196

Query: 121 P 122
           P
Sbjct: 197 P 197

[Close]

BLAST of Cla014873 vs. TrEMBL
Match: A0A0D2QS02_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G179400 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.7e-51
Identity = 107/121 (88.43%), Postives = 114/121 (94.21%), Query Frame = 1


Query: 1   MHAQTSVAAGMKSASKAMSAMNKQMNPVKQAKVIREFQKQSAQMDMTTEMISDAIDDALD 60
           MHAQ+SVA GMK A+KAMSAMNKQM P KQAKVIREFQKQS QMDMTTEM+SDAIDDALD
Sbjct: 92  MHAQSSVAVGMKGATKAMSAMNKQMAPEKQAKVIREFQKQSGQMDMTTEMMSDAIDDALD 151

Query: 61  DDEAEEETEDLTNQVLDEIGVDVASQLSTAPKGKIASKNTEGVSSSGIDELEKRLAALRN 120
           DDEAE+ETEDLTNQVLDEIGVDVASQLS+APKG+IA KNTEGV SSG+DELEKRLAALRN
Sbjct: 152 DDEAEDETEDLTNQVLDEIGVDVASQLSSAPKGRIAGKNTEGVGSSGVDELEKRLAALRN 211

Query: 121 P 122
           P
Sbjct: 212 P 212

[Close]

BLAST of Cla014873 vs. TrEMBL
Match: A0A067EZA4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028201mg PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.5e-50
Identity = 106/121 (87.60%), Postives = 112/121 (92.56%), Query Frame = 1


Query: 1   MHAQTSVAAGMKSASKAMSAMNKQMNPVKQAKVIREFQKQSAQMDMTTEMISDAIDDALD 60
           MHA +SVA GMK ASKAM+AMNKQM P KQAKV+REFQKQSAQMDMTTEM+SD IDDALD
Sbjct: 92  MHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALD 151

Query: 61  DDEAEEETEDLTNQVLDEIGVDVASQLSTAPKGKIASKNTEGVSSSGIDELEKRLAALRN 120
           +DEAEEETE+LTNQVLDEIGVDVASQLS APKGKIASKNTE  SSSGIDELEKRLAALRN
Sbjct: 152 NDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 211

Query: 121 P 122
           P
Sbjct: 212 P 212

[Close]

BLAST of Cla014873 vs. TrEMBL
Match: A0A067EZ67_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028201mg PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.5e-50
Identity = 106/121 (87.60%), Postives = 112/121 (92.56%), Query Frame = 1


Query: 1   MHAQTSVAAGMKSASKAMSAMNKQMNPVKQAKVIREFQKQSAQMDMTTEMISDAIDDALD 60
           MHA +SVA GMK ASKAM+AMNKQM P KQAKV+REFQKQSAQMDMTTEM+SD IDDALD
Sbjct: 65  MHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALD 124

Query: 61  DDEAEEETEDLTNQVLDEIGVDVASQLSTAPKGKIASKNTEGVSSSGIDELEKRLAALRN 120
           +DEAEEETE+LTNQVLDEIGVDVASQLS APKGKIASKNTE  SSSGIDELEKRLAALRN
Sbjct: 125 NDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 184

Query: 121 P 122
           P
Sbjct: 185 P 185

[Close]

BLAST of Cla014873 vs. NCBI nr
Match: gi|659092810|ref|XP_008447230.1| (PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3 [Cucumis melo])

HSP 1 Score: 229.9 bits (585), Expect = 2.3e-57
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 1


Query: 1   MHAQTSVAAGMKSASKAMSAMNKQMNPVKQAKVIREFQKQSAQMDMTTEMISDAIDDALD 60
           MHAQTSVAAGMKSASKAMSAMNKQMNPVKQAKVIREFQKQSAQMDMTTEMISDAIDDALD
Sbjct: 92  MHAQTSVAAGMKSASKAMSAMNKQMNPVKQAKVIREFQKQSAQMDMTTEMISDAIDDALD 151

Query: 61  DDEAEEETEDLTNQVLDEIGVDVASQLSTAPKGKIASKNTEGVSSSGIDELEKRLAALRN 120
           DDEAEEETEDLTNQVLDEIGVDVASQLSTAPKG+IASKNTEGVSSSGIDELEKRLAALRN
Sbjct: 152 DDEAEEETEDLTNQVLDEIGVDVASQLSTAPKGRIASKNTEGVSSSGIDELEKRLAALRN 211

Query: 121 P 122
           P
Sbjct: 212 P 212

[Close]

BLAST of Cla014873 vs. NCBI nr
Match: gi|449465288|ref|XP_004150360.1| (PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3 [Cucumis sativus])

HSP 1 Score: 228.4 bits (581), Expect = 6.7e-57
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 1


Query: 1   MHAQTSVAAGMKSASKAMSAMNKQMNPVKQAKVIREFQKQSAQMDMTTEMISDAIDDALD 60
           MHAQTSVAAGMKSASKAMSAMNKQMNPVKQAKVIREFQKQSAQMDMTTEMISDAIDDALD
Sbjct: 92  MHAQTSVAAGMKSASKAMSAMNKQMNPVKQAKVIREFQKQSAQMDMTTEMISDAIDDALD 151

Query: 61  DDEAEEETEDLTNQVLDEIGVDVASQLSTAPKGKIASKNTEGVSSSGIDELEKRLAALRN 120
           DDEAEEETEDLTNQVLDEIGVDVASQLSTAPKG+IASKNTEGV SSGIDELEKRLAALRN
Sbjct: 152 DDEAEEETEDLTNQVLDEIGVDVASQLSTAPKGRIASKNTEGVGSSGIDELEKRLAALRN 211

Query: 121 P 122
           P
Sbjct: 212 P 212

[Close]

BLAST of Cla014873 vs. NCBI nr
Match: gi|823125286|ref|XP_012483632.1| (PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like isoform X1 [Gossypium raimondii])

HSP 1 Score: 209.9 bits (533), Expect = 2.4e-51
Identity = 107/121 (88.43%), Postives = 114/121 (94.21%), Query Frame = 1


Query: 1   MHAQTSVAAGMKSASKAMSAMNKQMNPVKQAKVIREFQKQSAQMDMTTEMISDAIDDALD 60
           MHAQ+SVA GMK A+KAMSAMNKQM P KQAKVIREFQKQS QMDMTTEM+SDAIDDALD
Sbjct: 92  MHAQSSVAVGMKGATKAMSAMNKQMAPEKQAKVIREFQKQSGQMDMTTEMMSDAIDDALD 151

Query: 61  DDEAEEETEDLTNQVLDEIGVDVASQLSTAPKGKIASKNTEGVSSSGIDELEKRLAALRN 120
           DDEAE+ETEDLTNQVLDEIGVDVASQLS+APKG+IA KNTEGV SSG+DELEKRLAALRN
Sbjct: 152 DDEAEDETEDLTNQVLDEIGVDVASQLSSAPKGRIAGKNTEGVGSSGVDELEKRLAALRN 211

Query: 121 P 122
           P
Sbjct: 212 P 212

[Close]

BLAST of Cla014873 vs. NCBI nr
Match: gi|823125288|ref|XP_012483641.1| (PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like isoform X2 [Gossypium raimondii])

HSP 1 Score: 209.9 bits (533), Expect = 2.4e-51
Identity = 107/121 (88.43%), Postives = 114/121 (94.21%), Query Frame = 1


Query: 1   MHAQTSVAAGMKSASKAMSAMNKQMNPVKQAKVIREFQKQSAQMDMTTEMISDAIDDALD 60
           MHAQ+SVA GMK A+KAMSAMNKQM P KQAKVIREFQKQS QMDMTTEM+SDAIDDALD
Sbjct: 77  MHAQSSVAVGMKGATKAMSAMNKQMAPEKQAKVIREFQKQSGQMDMTTEMMSDAIDDALD 136

Query: 61  DDEAEEETEDLTNQVLDEIGVDVASQLSTAPKGKIASKNTEGVSSSGIDELEKRLAALRN 120
           DDEAE+ETEDLTNQVLDEIGVDVASQLS+APKG+IA KNTEGV SSG+DELEKRLAALRN
Sbjct: 137 DDEAEDETEDLTNQVLDEIGVDVASQLSSAPKGRIAGKNTEGVGSSGVDELEKRLAALRN 196

Query: 121 P 122
           P
Sbjct: 197 P 197

[Close]

BLAST of Cla014873 vs. NCBI nr
Match: gi|645260025|ref|XP_008235640.1| (PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3 [Prunus mume])

HSP 1 Score: 207.6 bits (527), Expect = 1.2e-50
Identity = 106/121 (87.60%), Postives = 114/121 (94.21%), Query Frame = 1


Query: 1   MHAQTSVAAGMKSASKAMSAMNKQMNPVKQAKVIREFQKQSAQMDMTTEMISDAIDDALD 60
           MHAQ+SVA GMK ASKAM+AMNKQM P KQA+VIREFQKQSAQMDMTTEM+SDAIDDALD
Sbjct: 92  MHAQSSVAVGMKGASKAMAAMNKQMAPAKQAQVIREFQKQSAQMDMTTEMMSDAIDDALD 151

Query: 61  DDEAEEETEDLTNQVLDEIGVDVASQLSTAPKGKIASKNTEGVSSSGIDELEKRLAALRN 120
           DDEAEEET++LTNQVLDEIGVDVASQLS APKG+IA+KNTEGV SSG DELEKRLAALRN
Sbjct: 152 DDEAEEETDELTNQVLDEIGVDVASQLSAAPKGRIAAKNTEGVGSSGTDELEKRLAALRN 211

Query: 121 P 122
           P
Sbjct: 212 P 212

The following BLAST results are available for this feature:

BLAST of Cla014873 vs. Swiss-Prot


Match Name	E-value	Identity	Description
VPS2C_ARATH	7.4e-48	80.67	Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana ...	[more]
VPS2B_ARATH	2.1e-39	66.67	Vacuolar protein sorting-associated protein 2 homolog 2 OS=Arabidopsis thaliana ...	[more]
VPS2A_ARATH	9.1e-22	46.40	Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana ...	[more]
CH2BB_XENLA	1.2e-21	40.83	Charged multivesicular body protein 2b-B OS=Xenopus laevis GN=chmp2b-b PE=2 SV=1	[more]
CHM2B_XENTR	1.5e-21	40.83	Charged multivesicular body protein 2b OS=Xenopus tropicalis GN=chmp2b PE=2 SV=1	[more]

BLAST of Cla014873 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5C0_CUCSA	4.6e-57	98.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G372290 PE=3 SV=1	[more]
A0A0D2Q0G4_GOSRA	1.7e-51	88.43	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G179400 PE=3 SV=1	[more]
A0A0D2QS02_GOSRA	1.7e-51	88.43	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G179400 PE=3 SV=1	[more]
A0A067EZA4_CITSI	2.5e-50	87.60	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028201mg PE=3 SV=1	[more]
A0A067EZ67_CITSI	2.5e-50	87.60	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028201mg PE=3 SV=1	[more]

BLAST of Cla014873 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092810\|ref\|XP_008447230.1\|	2.3e-57	99.17	PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3 [Cucumis melo...	[more]
gi\|449465288\|ref\|XP_004150360.1\|	6.7e-57	98.35	PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3 [Cucumis sati...	[more]
gi\|823125286\|ref\|XP_012483632.1\|	2.4e-51	88.43	PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like isoform ...	[more]
gi\|823125288\|ref\|XP_012483641.1\|	2.4e-51	88.43	PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like isoform ...	[more]
gi\|645260025\|ref\|XP_008235640.1\|	1.2e-50	87.60	PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005024	Snf7_fam
IPR010980	Cytochrome c/b562

Vocabulary: **Biological Process**
Term	Definition
GO:0007034	vacuolar transport
GO:0022900	electron transport chain

Vocabulary: **Molecular Function**
Term	Definition
GO:0005506	iron ion binding
GO:0009055	electron carrier activity
GO:0020037	heme binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0007034	vacuolar transport
biological_process	GO:0032509	endosome transport via multivesicular body sorting pathway
biological_process	GO:0045324	late endosome to vacuole transport
biological_process	GO:0015031	protein transport
cellular_component	GO:0005622	intracellular
cellular_component	GO:0000815	ESCRT III complex
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005771	multivesicular body
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU05567	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla014873	Cla014873.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU05567	WMU05567	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005024	Snf7 family	PFAM	PF03357	Snf7	coord: 1..94 score: 2.5
IPR010980	Cytochrome c/b562	GENE3D	G3DSA:1.20.120.10		coord: 15..97 score: 5.
None	No IPR available	PANTHER	PTHR10476	CHARGED MULTIVESICULAR BODY PROTEIN	coord: 1..121 score: 2.4
None	No IPR available	PANTHER	PTHR10476:SF15	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2 HOMOLOG 3	coord: 1..121 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla014873	Cla97C09G170890	Watermelon (97103) v2	wmwmbB041
Cla014873	Csa7G372290	Cucumber (Chinese Long) v2	cuwmB567
Cla014873	MELO3C012728	Melon (DHL92) v3.5.1	mewmB192
Cla014873	ClCG09G008220	Watermelon (Charleston Gray)	wcgwmB007
Cla014873	CSPI07G15050	Wild cucumber (PI 183967)	cpiwmB586
Cla014873	Cucsa.388000	Cucumber (Gy14) v1	cgywmB702
Cla014873	CmaCh08G002620	Cucurbita maxima (Rimu)	cmawmB856
Cla014873	CmaCh17G013100	Cucurbita maxima (Rimu)	cmawmB331
Cla014873	CmoCh08G002580	Cucurbita moschata (Rifu)	cmowmB843
Cla014873	Lsi02G021620	Bottle gourd (USVL1VR-Ls)	lsiwmB175
Cla014873	Cp4.1LG12g10600	Cucurbita pepo (Zucchini)	cpewmB135
Cla014873	CsGy7G013540	Cucumber (Gy14) v2	cgybwmB529
Cla014873	MELO3C012728.2	Melon (DHL92) v3.6.1	medwmB188
Cla014873	Carg11490	Silver-seed gourd	carwmB0014
Cla014873	Carg05084	Silver-seed gourd	carwmB0079
Cla014873	Bhi09G001021	Wax gourd	wgowmB580

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla014873	Cucumber (Chinese Long) v3	cucwmB592
Cla014873	Cucurbita moschata (Rifu)	cmowmB325
Cla014873	Cucurbita pepo (Zucchini)	cpewmB317