Cla014821 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla014821
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	PfkB-type carbohydrate kinase family protein (AHRD V1 ***- D7KG61_ARALL)
Location	Chr9 : 6355629 .. 6356006 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCTAACCGCCATTTCTTTCCAATCTTCACTCCATTGCTTCACTGGACTTCCTTCTCCTCCACCCTTTCATCGCAACTTGGGGCTTCATCCTTCAATTCCTTCAAGAACCAGTCGGGTTTTACTCTGTTGCAAGAAGCTTCAAGTATCGGAGCCTAAGCATTACGCCAACTCTTTCAATTTCTCGAATGAGAGCGTAGCGGTTCCTAAATTCAGGAGTGCGAATGCGAAGGATATAGATGTTGCTACTCTTGGAAATCTTTGCGTGGATATTGTGCTTAATGTTCCTAGTTTACCTCCAGAAAATGATGATGAACGCCAGGCCTATATGGAACGCTTGTCCTCCTCGCCTCCTGATAAGGTTTGTTTTTGCTGA

mRNA sequence

ATGCCGCTAACCGCCATTTCTTTCCAATCTTCACTCCATTGCTTCACTGGACTTCCTTCTCCTCCACCCTTTCATCGCAACTTGGGGCTTCATCCTTCAATTCCTTCAAGAACCAGTCGGGTTTTACTCTGTTGCAAGAAGCTTCAAGTATCGGAGCCTAAGCATTACGCCAACTCTTTCAATTTCTCGAATGAGAGCGTAGCGGTTCCTAAATTCAGGAGTGCGAATGCGAAGGATATAGATGTTGCTACTCTTGGAAATCTTTGCGTGGATATTGTGCTTAATGTTCCTAGTTTACCTCCAGAAAATGATGATGAACGCCAGGCCTATATGGAACGCTTGTCCTCCTCGCCTCCTGATAAGGTTTGTTTTTGCTGA

Coding sequence (CDS)

ATGCCGCTAACCGCCATTTCTTTCCAATCTTCACTCCATTGCTTCACTGGACTTCCTTCTCCTCCACCCTTTCATCGCAACTTGGGGCTTCATCCTTCAATTCCTTCAAGAACCAGTCGGGTTTTACTCTGTTGCAAGAAGCTTCAAGTATCGGAGCCTAAGCATTACGCCAACTCTTTCAATTTCTCGAATGAGAGCGTAGCGGTTCCTAAATTCAGGAGTGCGAATGCGAAGGATATAGATGTTGCTACTCTTGGAAATCTTTGCGTGGATATTGTGCTTAATGTTCCTAGTTTACCTCCAGAAAATGATGATGAACGCCAGGCCTATATGGAACGCTTGTCCTCCTCGCCTCCTGATAAGGTTTGTTTTTGCTGA

Protein sequence

MPLTAISFQSSLHCFTGLPSPPPFHRNLGLHPSIPSRTSRVLLCCKKLQVSEPKHYANSFNFSNESVAVPKFRSANAKDIDVATLGNLCVDIVLNVPSLPPENDDERQAYMERLSSSPPDKVCFC

Homology

[Close]

BLAST of Cla014821 vs. TrEMBL
Match: A0A0A0KAB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G378400 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 8.5e-54
Identity = 103/121 (85.12%), Postives = 112/121 (92.56%), Query Frame = 1


Query: 1   MPLTAISFQSSLHCFTGLPSPPPFHRNLGLHPSIPSRTSRVLLCCKKLQVSEPKHYANSF 60
           MPL+AISFQSSLHCFTGLP P PF  NLGLHPSIPS+ +R  LCCKKLQVSEPKHY NSF
Sbjct: 1   MPLSAISFQSSLHCFTGLPFPRPFRPNLGLHPSIPSKPTRGFLCCKKLQVSEPKHYPNSF 60

Query: 61  NFSNESVAVPKFRSANAKDIDVATLGNLCVDIVLNVPSLPPENDDERQAYMERLSSSPPD 120
           NFSNE VA+PKFRS+++KDIDVATLGNLCVDIVLNVPSLPPENDDER+AYMERLSSSPP+
Sbjct: 61  NFSNECVAIPKFRSSSSKDIDVATLGNLCVDIVLNVPSLPPENDDERRAYMERLSSSPPE 120

Query: 121 K 122
           K
Sbjct: 121 K 121

[Close]

BLAST of Cla014821 vs. TrEMBL
Match: A0A061DQ42_THECC (PfkB-like carbohydrate kinase family protein OS=Theobroma cacao GN=TCM_004168 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.8e-17
Identity = 53/115 (46.09%), Postives = 67/115 (58.26%), Query Frame = 1


Query: 8   FQSSLHCFTGLPSPPPFHR-NLGLHPSIPSRTSRVLLCCKKLQVSEPKHYANSFNFSNES 67
           F   LH    +PS P F   +  LHP+    + R + CC+   +  P H   S   SN +
Sbjct: 15  FPPHLHPPKPIPSRPVFAPISFPLHPNTTINSPRSVFCCRNFHIPVPNHPPRSLPSSNAT 74

Query: 68  VAVPKFRSANAKDIDVATLGNLCVDIVLNVPSLPPENDDERQAYMERLSSSPPDK 122
                 + A  K +DVATLGNLCVDIVLNVP LPP + D R+A+ME+LSSSPPDK
Sbjct: 75  ------KPAAVKTVDVATLGNLCVDIVLNVPKLPPPSPDARKAFMEQLSSSPPDK 123

[Close]

BLAST of Cla014821 vs. TrEMBL
Match: M5VI12_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026789mg PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 8.3e-17
Identity = 59/128 (46.09%), Postives = 71/128 (55.47%), Query Frame = 1


Query: 14  CFTGLPSPPPFHR-NLGLHPSIP------------------SRTSRVLLCCKKLQVSEPK 73
           C   L SP P+H  +   HP  P                  +R   V    + L +S PK
Sbjct: 4   CTITLKSPIPYHAPSSQSHPIFPHNPRLTQSQSHPILAPICTRAHSVFNSTRGLDISAPK 63

Query: 74  HYANS-FNFSNESVAVPKFRSANAKDIDVATLGNLCVDIVLNVPSLPPENDDERQAYMER 122
           H +NS  N  N SV   K +S   KDIDVATLGNLCVDIVLNVP LPP +  +R+AYM+R
Sbjct: 64  HTSNSNSNAINGSVHDLKSKSVGVKDIDVATLGNLCVDIVLNVPKLPPPDVHDRKAYMDR 123

[Close]

BLAST of Cla014821 vs. TrEMBL
Match: A0A0K9RR57_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_044020 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.4e-16
Identity = 57/123 (46.34%), Postives = 75/123 (60.98%), Query Frame = 1


Query: 3   LTAISFQSSLHCFTGLPSPPPFHRNLGLHPSIPSRTSRVL----LCCKKLQVSEPKHYAN 62
           L+  S  SS   F  +   PP + N  + PS PS +S+ L    + CK ++VS   +  N
Sbjct: 6   LSPKSLISSNVFFPSISLLPPTNPNSTI-PSFPSNSSKTLRNSIVNCKGIEVSVLNNLPN 65

Query: 63  SFNFSNESVAVPKFRSANAKDIDVATLGNLCVDIVLNVPSLPPENDDERQAYMERLSSSP 122
           S N S+ +    K R+   KD+D+ATLGNLCVDIVLNVP LPP+   ER+ YM+ LSSSP
Sbjct: 66  SLNSSSTN---DKLRNVGVKDVDIATLGNLCVDIVLNVPQLPPKPLPERKDYMDSLSSSP 124

[Close]

BLAST of Cla014821 vs. TrEMBL
Match: A0A0J8F3H8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g120550 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-15
Identity = 52/115 (45.22%), Postives = 71/115 (61.74%), Query Frame = 1


Query: 11  SLHCFTGLPSPPPFHRNLGLHPSIPSRTSRVL----LCCKKLQVSEPKHYANSFNFSNES 70
           S + F  L   PP + N    PS  S +S+ L    + C+ ++VS   +++ S N S+  
Sbjct: 13  SSNVFPSLSLLPPSNPNSNF-PSFSSNSSKTLRNSIVNCRGIEVSVVNNHSYSLNSSSNG 72

Query: 71  VAVPKFRSANAKDIDVATLGNLCVDIVLNVPSLPPENDDERQAYMERLSSSPPDK 122
                 ++   KD+D+ATLGNLCVDIVLNVP LPP+  DER+AYM+ LSSSPPDK
Sbjct: 73  ---SNSKNVGVKDVDIATLGNLCVDIVLNVPQLPPKPLDEREAYMDALSSSPPDK 123

[Close]

BLAST of Cla014821 vs. NCBI nr
Match: gi|659100784|ref|XP_008451263.1| (PREDICTED: fructokinase-1 [Cucumis melo])

HSP 1 Score: 218.0 bits (554), Expect = 9.3e-54
Identity = 105/121 (86.78%), Postives = 111/121 (91.74%), Query Frame = 1


Query: 1   MPLTAISFQSSLHCFTGLPSPPPFHRNLGLHPSIPSRTSRVLLCCKKLQVSEPKHYANSF 60
           MPL+AISFQSSL CFTGLP P PF  NLGLHPSIPS+ +R  LCCKKLQVSEPKHY NSF
Sbjct: 1   MPLSAISFQSSLRCFTGLPFPTPFQPNLGLHPSIPSKPTRGFLCCKKLQVSEPKHYPNSF 60

Query: 61  NFSNESVAVPKFRSANAKDIDVATLGNLCVDIVLNVPSLPPENDDERQAYMERLSSSPPD 120
           NFSNE VAVPKFRSA++KDIDVATLGNLCVDIVLNVPSLPPENDDER+AYMERLSSSPPD
Sbjct: 61  NFSNECVAVPKFRSASSKDIDVATLGNLCVDIVLNVPSLPPENDDERRAYMERLSSSPPD 120

Query: 121 K 122
           K
Sbjct: 121 K 121

[Close]

BLAST of Cla014821 vs. NCBI nr
Match: gi|449458504|ref|XP_004146987.1| (PREDICTED: fructokinase-1 [Cucumis sativus])

HSP 1 Score: 217.6 bits (553), Expect = 1.2e-53
Identity = 103/121 (85.12%), Postives = 112/121 (92.56%), Query Frame = 1


Query: 1   MPLTAISFQSSLHCFTGLPSPPPFHRNLGLHPSIPSRTSRVLLCCKKLQVSEPKHYANSF 60
           MPL+AISFQSSLHCFTGLP P PF  NLGLHPSIPS+ +R  LCCKKLQVSEPKHY NSF
Sbjct: 1   MPLSAISFQSSLHCFTGLPFPRPFRPNLGLHPSIPSKPTRGFLCCKKLQVSEPKHYPNSF 60

Query: 61  NFSNESVAVPKFRSANAKDIDVATLGNLCVDIVLNVPSLPPENDDERQAYMERLSSSPPD 120
           NFSNE VA+PKFRS+++KDIDVATLGNLCVDIVLNVPSLPPENDDER+AYMERLSSSPP+
Sbjct: 61  NFSNECVAIPKFRSSSSKDIDVATLGNLCVDIVLNVPSLPPENDDERRAYMERLSSSPPE 120

Query: 121 K 122
           K
Sbjct: 121 K 121

[Close]

BLAST of Cla014821 vs. NCBI nr
Match: gi|700189518|gb|KGN44751.1| (hypothetical protein Csa_7G378400 [Cucumis sativus])

HSP 1 Score: 217.6 bits (553), Expect = 1.2e-53
Identity = 103/121 (85.12%), Postives = 112/121 (92.56%), Query Frame = 1


Query: 1   MPLTAISFQSSLHCFTGLPSPPPFHRNLGLHPSIPSRTSRVLLCCKKLQVSEPKHYANSF 60
           MPL+AISFQSSLHCFTGLP P PF  NLGLHPSIPS+ +R  LCCKKLQVSEPKHY NSF
Sbjct: 1   MPLSAISFQSSLHCFTGLPFPRPFRPNLGLHPSIPSKPTRGFLCCKKLQVSEPKHYPNSF 60

Query: 61  NFSNESVAVPKFRSANAKDIDVATLGNLCVDIVLNVPSLPPENDDERQAYMERLSSSPPD 120
           NFSNE VA+PKFRS+++KDIDVATLGNLCVDIVLNVPSLPPENDDER+AYMERLSSSPP+
Sbjct: 61  NFSNECVAIPKFRSSSSKDIDVATLGNLCVDIVLNVPSLPPENDDERRAYMERLSSSPPE 120

Query: 121 K 122
           K
Sbjct: 121 K 121

[Close]

BLAST of Cla014821 vs. NCBI nr
Match: gi|590716275|ref|XP_007050385.1| (PfkB-like carbohydrate kinase family protein [Theobroma cacao])

HSP 1 Score: 96.3 bits (238), Expect = 4.1e-17
Identity = 53/115 (46.09%), Postives = 67/115 (58.26%), Query Frame = 1


Query: 8   FQSSLHCFTGLPSPPPFHR-NLGLHPSIPSRTSRVLLCCKKLQVSEPKHYANSFNFSNES 67
           F   LH    +PS P F   +  LHP+    + R + CC+   +  P H   S   SN +
Sbjct: 15  FPPHLHPPKPIPSRPVFAPISFPLHPNTTINSPRSVFCCRNFHIPVPNHPPRSLPSSNAT 74

Query: 68  VAVPKFRSANAKDIDVATLGNLCVDIVLNVPSLPPENDDERQAYMERLSSSPPDK 122
                 + A  K +DVATLGNLCVDIVLNVP LPP + D R+A+ME+LSSSPPDK
Sbjct: 75  ------KPAAVKTVDVATLGNLCVDIVLNVPKLPPPSPDARKAFMEQLSSSPPDK 123

[Close]

BLAST of Cla014821 vs. NCBI nr
Match: gi|595791399|ref|XP_007199448.1| (hypothetical protein PRUPE_ppa026789mg [Prunus persica])

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-16
Identity = 59/128 (46.09%), Postives = 71/128 (55.47%), Query Frame = 1


Query: 14  CFTGLPSPPPFHR-NLGLHPSIP------------------SRTSRVLLCCKKLQVSEPK 73
           C   L SP P+H  +   HP  P                  +R   V    + L +S PK
Sbjct: 4   CTITLKSPIPYHAPSSQSHPIFPHNPRLTQSQSHPILAPICTRAHSVFNSTRGLDISAPK 63

Query: 74  HYANS-FNFSNESVAVPKFRSANAKDIDVATLGNLCVDIVLNVPSLPPENDDERQAYMER 122
           H +NS  N  N SV   K +S   KDIDVATLGNLCVDIVLNVP LPP +  +R+AYM+R
Sbjct: 64  HTSNSNSNAINGSVHDLKSKSVGVKDIDVATLGNLCVDIVLNVPKLPPPDVHDRKAYMDR 123

The following BLAST results are available for this feature:

BLAST of Cla014821 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAB6_CUCSA	8.5e-54	85.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G378400 PE=4 SV=1	[more]
A0A061DQ42_THECC	2.8e-17	46.09	PfkB-like carbohydrate kinase family protein OS=Theobroma cacao GN=TCM_004168 PE...	[more]
M5VI12_PRUPE	8.3e-17	46.09	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026789mg PE=4 SV=1	[more]
A0A0K9RR57_SPIOL	2.4e-16	46.34	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_044020 PE=4 SV=1	[more]
A0A0J8F3H8_BETVU	1.6e-15	45.22	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g120550 PE=4 S...	[more]

BLAST of Cla014821 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659100784\|ref\|XP_008451263.1\|	9.3e-54	86.78	PREDICTED: fructokinase-1 [Cucumis melo]	[more]
gi\|449458504\|ref\|XP_004146987.1\|	1.2e-53	85.12	PREDICTED: fructokinase-1 [Cucumis sativus]	[more]
gi\|700189518\|gb\|KGN44751.1\|	1.2e-53	85.12	hypothetical protein Csa_7G378400 [Cucumis sativus]	[more]
gi\|590716275\|ref\|XP_007050385.1\|	4.1e-17	46.09	PfkB-like carbohydrate kinase family protein [Theobroma cacao]	[more]
gi\|595791399\|ref\|XP_007199448.1\|	1.2e-16	46.09	hypothetical protein PRUPE_ppa026789mg [Prunus persica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla014821	Cla014821.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla014821	CSPI07G15720	Wild cucumber (PI 183967)	cpiwmB586

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla014821	Cucumber (Chinese Long) v3	cucwmB592
Cla014821	Watermelon (97103) v2	wmwmbB041
Cla014821	Wax gourd	wgowmB580
Cla014821	Cucurbita moschata (Rifu)	cmowmB843
Cla014821	Cucumber (Gy14) v1	cgywmB702
Cla014821	Cucurbita maxima (Rimu)	cmawmB328
Cla014821	Cucurbita maxima (Rimu)	cmawmB333
Cla014821	Cucurbita maxima (Rimu)	cmawmB778
Cla014821	Cucurbita maxima (Rimu)	cmawmB856
Cla014821	Cucurbita moschata (Rifu)	cmowmB322
Cla014821	Melon (DHL92) v3.5.1	mewmB205
Cla014821	Watermelon (Charleston Gray)	wcgwmB007
Cla014821	Watermelon (Charleston Gray)	wcgwmB271
Cla014821	Cucumber (Chinese Long) v2	cuwmB567
Cla014821	Cucurbita pepo (Zucchini)	cpewmB131
Cla014821	Cucurbita pepo (Zucchini)	cpewmB311
Cla014821	Cucurbita pepo (Zucchini)	cpewmB314
Cla014821	Cucurbita pepo (Zucchini)	cpewmB823
Cla014821	Bottle gourd (USVL1VR-Ls)	lsiwmB175
Cla014821	Cucumber (Gy14) v2	cgybwmB529
Cla014821	Melon (DHL92) v3.6.1	medwmB201
Cla014821	Silver-seed gourd	carwmB0106
Cla014821	Silver-seed gourd	carwmB0215
Cla014821	Silver-seed gourd	carwmB0959
Cla014821	Silver-seed gourd	carwmB0988