Cla014658 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla014658
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr7 : 19028372 .. 19028974 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGACGCCTACAGAAGCAGAAATGAATGACGCCCTCAAAATCATCGCCAAACCGGGGTCAGAGTGGAACACTTCCCCAAAGGACATTCAAACATTGGCGCCGACTTGCTTGATCGCCGAGGCCAACCTGTGGCTTTACTTCATCAAGCGGTCGCTAATCCCCACAACGCATGACGCTTCAATTTCAAGGGACCATGCCATGGTCATTTATTGCATCATGCGGGGAATTCGGTTAGACGTGGGACACATCATTGCCCCACAGATTCGGGGGTTGTTTTTCAAGCCAAGGGATCAGCTATTCTTCCCCTTTCTTGTGACAAGACTGTGCGCCAACGCAGAGTTCATGGAGGATGCGCCAGTCAGAGCAGTAAATAGAGTCCTTTCAGCCCAAAGTCTCAGACGGATATTAAAGAACTCCCCGCATCTGCTTGAGGCGGCCAACTCAAAGAAGAGGCCGACCAAGTCACAAGAACCATCATCCCGCAACCTCCTCAACCCAAGAAGAGGAAACTGGTCAAGAAGAATTTTAAGATACTGGCGTCGAGTTCACAACCTAGTGAAGCTGAAGAAACAGTTCAGTTCGACGCCAACACAATCTTGA

mRNA sequence

ATGTCGACGCCTACAGAAGCAGAAATGAATGACGCCCTCAAAATCATCGCCAAACCGGGGTCAGAGTGGAACACTTCCCCAAAGGACATTCAAACATTGGCGCCGACTTGCTTGATCGCCGAGGCCAACCTGTGGCTTTACTTCATCAAGCGGTCGCTAATCCCCACAACGCATGACGCTTCAATTTCAAGGGACCATGCCATGGTCATTTATTGCATCATGCGGGGAATTCGGTTAGACGTGGGACACATCATTGCCCCACAGATTCGGGGGTTGTTTTTCAAGCCAAGGGATCAGCTATTCTTCCCCTTTCTTGTGACAAGACTGTGCGCCAACGCAGAGTTCATGGAGGATGCGCCAGTCAGAGCAGTAAATAGAGTCCTTTCAGCCCAAAGTCTCAGACGGATATTAAAGAACTCCCCGCATCTGCTTGAGGCGGCCAACTCAAAGAAGAGGCCGACCAAGTCACAAGAACCATCATCCCGCAACCTCCTCAACCCAAGAAGAGGAAACTGGTCAAGAAGAATTTTAAGATACTGGCGTCGAGTTCACAACCTAGTGAAGCTGAAGAAACAGTTCAGTTCGACGCCAACACAATCTTGA

Coding sequence (CDS)

ATGTCGACGCCTACAGAAGCAGAAATGAATGACGCCCTCAAAATCATCGCCAAACCGGGGTCAGAGTGGAACACTTCCCCAAAGGACATTCAAACATTGGCGCCGACTTGCTTGATCGCCGAGGCCAACCTGTGGCTTTACTTCATCAAGCGGTCGCTAATCCCCACAACGCATGACGCTTCAATTTCAAGGGACCATGCCATGGTCATTTATTGCATCATGCGGGGAATTCGGTTAGACGTGGGACACATCATTGCCCCACAGATTCGGGGGTTGTTTTTCAAGCCAAGGGATCAGCTATTCTTCCCCTTTCTTGTGACAAGACTGTGCGCCAACGCAGAGTTCATGGAGGATGCGCCAGTCAGAGCAGTAAATAGAGTCCTTTCAGCCCAAAGTCTCAGACGGATATTAAAGAACTCCCCGCATCTGCTTGAGGCGGCCAACTCAAAGAAGAGGCCGACCAAGTCACAAGAACCATCATCCCGCAACCTCCTCAACCCAAGAAGAGGAAACTGGTCAAGAAGAATTTTAAGATACTGGCGTCGAGTTCACAACCTAGTGAAGCTGAAGAAACAGTTCAGTTCGACGCCAACACAATCTTGA

Protein sequence

MSTPTEAEMNDALKIIAKPGSEWNTSPKDIQTLAPTCLIAEANLWLYFIKRSLIPTTHDASISRDHAMVIYCIMRGIRLDVGHIIAPQIRGLFFKPRDQLFFPFLVTRLCANAEFMEDAPVRAVNRVLSAQSLRRILKNSPHLLEAANSKKRPTKSQEPSSRNLLNPRRGNWSRRILRYWRRVHNLVKLKKQFSSTPTQS

Homology

[Close]

BLAST of Cla014658 vs. TrEMBL
Match: W9RBS1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.0e-10
Identity = 46/155 (29.68%), Postives = 77/155 (49.68%), Query Frame = 1


Query: 6   EAEMNDALKIIAKPGSEWNTSPKDIQTLAPTCLIAEANLWLYFIKRSLIPTTHDASISRD 65
           E ++ + LK IA  G++W  S K   T     L   A +W +F+   L+ +TH  +ISR+
Sbjct: 154 EEQLKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTHGKTISRN 213

Query: 66  HAMVIYCIMRGIRLDVGHIIAPQIRGLFFKPRDQLFFPFLVTRLCANAEFMEDAPVRAVN 125
            A+++Y ++ G  ++VG +I  QIR    K +  L+FP L++ LC  +    +A    + 
Sbjct: 214 RAILLYAVLVGKPINVGRLIIDQIRACAEKGKGGLYFPSLISELCIQSHVAWEASEPRL- 273

Query: 126 RVLSAQSLRRILKNSPHLLEAANSKKRPTKSQEPS 161
           R   A  L  I + S    E +   +   +  EPS
Sbjct: 274 RNTGAMDLVAITRISSGRSEKSEKGEEEEEQDEPS 307

[Close]

BLAST of Cla014658 vs. TrEMBL
Match: W9S7D3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006967 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.3e-08
Identity = 29/105 (27.62%), Postives = 60/105 (57.14%), Query Frame = 1


Query: 6   EAEMNDALKIIAKPGSEWNTSPKDIQTLAPTCLIAEANLWLYFIKRSLIPTTHDASISRD 65
           E ++++ +  +   G+EW  + +   T    CL     +W +F++  L+P++H   + ++
Sbjct: 121 EDQLDEVINELCVEGTEWWRATRGSMTFPKECLQPGPKIWYHFLRFRLMPSSHYRLVHKE 180

Query: 66  HAMVIYCIMRGIRLDVGHIIAPQIRGLFFKPRDQLFFPFLVTRLC 111
            A+++YC+M+G  L+VG +I  Q+     +    L+FP L+T+LC
Sbjct: 181 RAILLYCMMKGRPLNVGRMIRQQVGVCAGRKNGGLWFPSLITQLC 225

[Close]

BLAST of Cla014658 vs. TrEMBL
Match: A0A061F2U9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024087 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-07
Identity = 31/94 (32.98%), Postives = 54/94 (57.45%), Query Frame = 1


Query: 20  GSEWNTSPKDIQTLAPTCLIAEANLWLYFIKRSLIPTTHDASISRDHAMVIYCIMRGIRL 79
           G++W TS  +  +   + +  E  +WL+F+   L+ +TH + +++D A++IY I+    +
Sbjct: 96  GAQWKTSHDEPVSFKRSVMKKELQVWLHFVAARLLSSTHISDVTKDRAVLIYAIVAHKSI 155

Query: 80  DVGHIIAPQIRGLFFKPRDQLFFPFLVTRLCANA 114
           DVG +I+  I       RD + FP L+T LCA A
Sbjct: 156 DVGKVISHAILHTGRTKRDGIGFPSLITALCARA 189

[Close]

BLAST of Cla014658 vs. TrEMBL
Match: W9QTD9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-07
Identity = 37/138 (26.81%), Postives = 70/138 (50.72%), Query Frame = 1


Query: 2   STPTEAEMNDALKIIAKPGSEWNTSPKDIQTLAPTCLIAEANLWLYFIKRSLIPTTHDAS 61
           S  T+ ++   L  +A  G+ W  SP+   T     L   A +W +F+    +P+TH  +
Sbjct: 78  SEVTDEQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYHFLTARFMPSTHGKT 137

Query: 62  ISRDHAMVIYCIMRGIRLDVGHIIAPQIRGL-FFKPRDQLFFPFLVTRLC--ANAEFMED 121
           +++D  +++Y I+ GI +++  I   +I+     + R  L+FP L+T+L   AN  + +D
Sbjct: 138 VAKDRVLLLYSILTGISVNIEEITIKEIKACSAARKRGGLYFPSLITQLWLKANVPYHKD 197

Query: 122 APVRAVNRVLSAQSLRRI 137
             +      +S  S+ RI
Sbjct: 198 EAIVHNAGAISTLSISRI 215

[Close]

BLAST of Cla014658 vs. TrEMBL
Match: A0A0A0LAN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-06
Identity = 34/96 (35.42%), Postives = 55/96 (57.29%), Query Frame = 1


Query: 44  LWLYFIKRSLIPTTHDASISRDHAMVIYCIMRGIRLDVGHIIAPQIRGLFFKPRDQLFFP 103
           +WL  IK+ ++PT H ++IS +  M++YCIM+ I +++G II+  I  L   PR    F 
Sbjct: 28  IWLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFS 87

Query: 104 FLVTRLCANAEFM-EDAP-VRAVNRVLSAQSLRRIL 138
           +L+ +LC  A  M E  P V   + +    +L RI+
Sbjct: 88  YLIEQLCLRACLMLEKLPQVEVKDGIWLPSTLHRII 123

[Close]

BLAST of Cla014658 vs. NCBI nr
Match: gi|703082781|ref|XP_010092041.1| (hypothetical protein L484_000844 [Morus notabilis])

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 46/155 (29.68%), Postives = 77/155 (49.68%), Query Frame = 1


Query: 6   EAEMNDALKIIAKPGSEWNTSPKDIQTLAPTCLIAEANLWLYFIKRSLIPTTHDASISRD 65
           E ++ + LK IA  G++W  S K   T     L   A +W +F+   L+ +TH  +ISR+
Sbjct: 154 EEQLKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTHGKTISRN 213

Query: 66  HAMVIYCIMRGIRLDVGHIIAPQIRGLFFKPRDQLFFPFLVTRLCANAEFMEDAPVRAVN 125
            A+++Y ++ G  ++VG +I  QIR    K +  L+FP L++ LC  +    +A    + 
Sbjct: 214 RAILLYAVLVGKPINVGRLIIDQIRACAEKGKGGLYFPSLISELCIQSHVAWEASEPRL- 273

Query: 126 RVLSAQSLRRILKNSPHLLEAANSKKRPTKSQEPS 161
           R   A  L  I + S    E +   +   +  EPS
Sbjct: 274 RNTGAMDLVAITRISSGRSEKSEKGEEEEEQDEPS 307

[Close]

BLAST of Cla014658 vs. NCBI nr
Match: gi|703121924|ref|XP_010102456.1| (hypothetical protein L484_006967 [Morus notabilis])

HSP 1 Score: 67.4 bits (163), Expect = 3.2e-08
Identity = 29/105 (27.62%), Postives = 60/105 (57.14%), Query Frame = 1


Query: 6   EAEMNDALKIIAKPGSEWNTSPKDIQTLAPTCLIAEANLWLYFIKRSLIPTTHDASISRD 65
           E ++++ +  +   G+EW  + +   T    CL     +W +F++  L+P++H   + ++
Sbjct: 121 EDQLDEVINELCVEGTEWWRATRGSMTFPKECLQPGPKIWYHFLRFRLMPSSHYRLVHKE 180

Query: 66  HAMVIYCIMRGIRLDVGHIIAPQIRGLFFKPRDQLFFPFLVTRLC 111
            A+++YC+M+G  L+VG +I  Q+     +    L+FP L+T+LC
Sbjct: 181 RAILLYCMMKGRPLNVGRMIRQQVGVCAGRKNGGLWFPSLITQLC 225

[Close]

BLAST of Cla014658 vs. NCBI nr
Match: gi|590634332|ref|XP_007028347.1| (Uncharacterized protein TCM_024087 [Theobroma cacao])

HSP 1 Score: 64.3 bits (155), Expect = 2.7e-07
Identity = 31/94 (32.98%), Postives = 54/94 (57.45%), Query Frame = 1


Query: 20  GSEWNTSPKDIQTLAPTCLIAEANLWLYFIKRSLIPTTHDASISRDHAMVIYCIMRGIRL 79
           G++W TS  +  +   + +  E  +WL+F+   L+ +TH + +++D A++IY I+    +
Sbjct: 96  GAQWKTSHDEPVSFKRSVMKKELQVWLHFVAARLLSSTHISDVTKDRAVLIYAIVAHKSI 155

Query: 80  DVGHIIAPQIRGLFFKPRDQLFFPFLVTRLCANA 114
           DVG +I+  I       RD + FP L+T LCA A
Sbjct: 156 DVGKVISHAILHTGRTKRDGIGFPSLITALCARA 189

[Close]

BLAST of Cla014658 vs. NCBI nr
Match: gi|703087370|ref|XP_010093253.1| (hypothetical protein L484_022412 [Morus notabilis])

HSP 1 Score: 64.3 bits (155), Expect = 2.7e-07
Identity = 37/138 (26.81%), Postives = 70/138 (50.72%), Query Frame = 1


Query: 2   STPTEAEMNDALKIIAKPGSEWNTSPKDIQTLAPTCLIAEANLWLYFIKRSLIPTTHDAS 61
           S  T+ ++   L  +A  G+ W  SP+   T     L   A +W +F+    +P+TH  +
Sbjct: 78  SEVTDEQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYHFLTARFMPSTHGKT 137

Query: 62  ISRDHAMVIYCIMRGIRLDVGHIIAPQIRGL-FFKPRDQLFFPFLVTRLC--ANAEFMED 121
           +++D  +++Y I+ GI +++  I   +I+     + R  L+FP L+T+L   AN  + +D
Sbjct: 138 VAKDRVLLLYSILTGISVNIEEITIKEIKACSAARKRGGLYFPSLITQLWLKANVPYHKD 197

Query: 122 APVRAVNRVLSAQSLRRI 137
             +      +S  S+ RI
Sbjct: 198 EAIVHNAGAISTLSISRI 215

[Close]

BLAST of Cla014658 vs. NCBI nr
Match: gi|700202594|gb|KGN57727.1| (hypothetical protein Csa_3G263250 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 2.3e-06
Identity = 34/96 (35.42%), Postives = 55/96 (57.29%), Query Frame = 1


Query: 44  LWLYFIKRSLIPTTHDASISRDHAMVIYCIMRGIRLDVGHIIAPQIRGLFFKPRDQLFFP 103
           +WL  IK+ ++PT H ++IS +  M++YCIM+ I +++G II+  I  L   PR    F 
Sbjct: 28  IWLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFS 87

Query: 104 FLVTRLCANAEFM-EDAP-VRAVNRVLSAQSLRRIL 138
           +L+ +LC  A  M E  P V   + +    +L RI+
Sbjct: 88  YLIEQLCLRACLMLEKLPQVEVKDGIWLPSTLHRII 123

The following BLAST results are available for this feature:

BLAST of Cla014658 vs. TrEMBL


Match Name	E-value	Identity	Description
W9RBS1_9ROSA	7.0e-10	29.68	Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1	[more]
W9S7D3_9ROSA	2.3e-08	27.62	Uncharacterized protein OS=Morus notabilis GN=L484_006967 PE=4 SV=1	[more]
A0A061F2U9_THECC	1.9e-07	32.98	Uncharacterized protein OS=Theobroma cacao GN=TCM_024087 PE=4 SV=1	[more]
W9QTD9_9ROSA	1.9e-07	26.81	Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1	[more]
A0A0A0LAN0_CUCSA	1.6e-06	35.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1	[more]

BLAST of Cla014658 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703082781\|ref\|XP_010092041.1\|	1.0e-09	29.68	hypothetical protein L484_000844 [Morus notabilis]	[more]
gi\|703121924\|ref\|XP_010102456.1\|	3.2e-08	27.62	hypothetical protein L484_006967 [Morus notabilis]	[more]
gi\|590634332\|ref\|XP_007028347.1\|	2.7e-07	32.98	Uncharacterized protein TCM_024087 [Theobroma cacao]	[more]
gi\|703087370\|ref\|XP_010093253.1\|	2.7e-07	26.81	hypothetical protein L484_022412 [Morus notabilis]	[more]
gi\|700202594\|gb\|KGN57727.1\|	2.3e-06	35.42	hypothetical protein Csa_3G263250 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla014658	Cla014658.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla014658	Wax gourd	wgowmB177
Cla014658	Cucumber (Gy14) v1	cgywmB147
Cla014658	Cucurbita maxima (Rimu)	cmawmB307
Cla014658	Cucurbita maxima (Rimu)	cmawmB677
Cla014658	Cucurbita moschata (Rifu)	cmowmB301
Cla014658	Cucurbita moschata (Rifu)	cmowmB671
Cla014658	Melon (DHL92) v3.5.1	mewmB505
Cla014658	Watermelon (Charleston Gray)	wcgwmB364
Cla014658	Cucumber (Chinese Long) v2	cuwmB310
Cla014658	Cucurbita pepo (Zucchini)	cpewmB218
Cla014658	Cucurbita pepo (Zucchini)	cpewmB408
Cla014658	Bottle gourd (USVL1VR-Ls)	lsiwmB446
Cla014658	Cucumber (Gy14) v2	cgybwmB288
Cla014658	Melon (DHL92) v3.6.1	medwmB491
Cla014658	Silver-seed gourd	carwmB0588
Cla014658	Silver-seed gourd	carwmB0940
Cla014658	Cucumber (Chinese Long) v3	cucwmB322
Cla014658	Watermelon (97103) v2	wmwmbB166