Cla014620 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla014620
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr7 : 19932462 .. 19932827 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAACTGCGAGCATTTGTTTCCGTCAATTCAAATATGCTTTAACTACGAAGTATATAAGGCCATTTAAGGATGATCTGGAGAAATTAAAATGTCCCTCGATTGAGTATTCCCATATTGAACAAGAACATTGGGATGCGTTTGTCAGTTTTCGGCTTAAGGAAGAGTTCCAAGTAAGTATTGTTGTTAGAAATATTCAAACTCTGTATTCACTTATATTGAAGCTGCAAAGTATCATTATGACATTTTATTATGTAATTTTATTAAGGTGGTCAGTAGTAAGAACAGAGAAAAGAGGAAAAAACATATGTATAATCATCGAATGTCGCGGAAGAGGTATGCTAATCTTTTGGAAGAGCTGGTAA

mRNA sequence

ATGCAAACTGCGAGCATTTGTTTCCGTCAATTCAAATATGCTTTAACTACGAAGTATATAAGGCCATTTAAGGATGATCTGGAGAAATTAAAATGTCCCTCGATTGAGTATTCCCATATTGAACAAGAACATTGGGATGCGTTTGTCAGTTTTCGGCTTAAGGAAGAGTTCCAAGTAAGTATTGTTGTTAGAAATATTCAAACTCTGTATTCACTTATATTGAAGCTGCAAAGTATCATTATGACATTTTATTATGTAATTTTATTAAGGTGGTCAGTAGTAAGAACAGAGAAAAGAGGAAAAAACATATGTATAATCATCGAATGTCGCGGAAGAGGTATGCTAATCTTTTGGAAGAGCTGGTAA

Coding sequence (CDS)

ATGCAAACTGCGAGCATTTGTTTCCGTCAATTCAAATATGCTTTAACTACGAAGTATATAAGGCCATTTAAGGATGATCTGGAGAAATTAAAATGTCCCTCGATTGAGTATTCCCATATTGAACAAGAACATTGGGATGCGTTTGTCAGTTTTCGGCTTAAGGAAGAGTTCCAAGTAAGTATTGTTGTTAGAAATATTCAAACTCTGTATTCACTTATATTGAAGCTGCAAAGTATCATTATGACATTTTATTATGTAATTTTATTAAGGTGGTCAGTAGTAAGAACAGAGAAAAGAGGAAAAAACATATGTATAATCATCGAATGTCGCGGAAGAGGTATGCTAATCTTTTGGAAGAGCTGGTAA

Protein sequence

MQTASICFRQFKYALTTKYIRPFKDDLEKLKCPSIEYSHIEQEHWDAFVSFRLKEEFQVSIVVRNIQTLYSLILKLQSIIMTFYYVILLRWSVVRTEKRGKNICIIIECRGRGMLIFWKSW

Homology

[Close]

BLAST of Cla014620 vs. TrEMBL
Match: W9RSV2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001825 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.2e-08
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 1


Query: 1   MQTASICFRQFKYALTTKYIRPFKDDLEKLKCPSIEYSHIEQEHWDAFVSFRLKEEF 58
           + +AS  ++ FK  LTTKYI PFKD  E LK P  +YS I+Q+HW  FV FRL EEF
Sbjct: 236 LSSASNSWKNFKNMLTTKYIVPFKDQPELLKHPPEDYSFIKQKHWGEFVRFRLSEEF 292

[Close]

BLAST of Cla014620 vs. TrEMBL
Match: W9RSV2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001825 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-07
Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 1


Query: 1   MQTASICFRQFKYALTTKYIRPFKDDLEKLKCPSIEYSHIEQEHWDAFVSFRLKEEF 58
           + +AS  ++ FK  LTTKYI PFKD  E LK P  +Y+ I+Q+HWD FV  RL EEF
Sbjct: 521 LSSASSSWKNFKSYLTTKYIVPFKDQPELLKNPPKDYNFIKQKHWDEFVRSRLSEEF 577

HSP 2 Score: 63.9 bits (154), Expect = 1.5e-07
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 1


Query: 1   MQTASICFRQFKYALTTKYIRPFKDDLEKLKCPSIEYSHIEQEHWDAFVSFRLKEEFQ 59
           + +AS  +RQFK  LT KYI PFKD+ E LK P  +Y  I+Q+HW  FV+ RL +EFQ
Sbjct: 97  LTSASNRWRQFKSDLTRKYIMPFKDEAEALKNPPEDYGFIKQQHWQQFVNGRLTKEFQ 154

[Close]

BLAST of Cla014620 vs. TrEMBL
Match: A5AEE4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029185 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-07
Identity = 31/54 (57.41%), Postives = 36/54 (66.67%), Query Frame = 1


Query: 6   ICFRQFKYALTTKYIRPFKDDLEKLKCPSIEYSHIEQEHWDAFVSFRLKEEFQV 60
           I FR FKY LT KYI PFK+DLEKLK PS  Y  I+++HW  FV  R  E F +
Sbjct: 578 IRFRTFKYKLTKKYILPFKNDLEKLKKPSPIYPFIQEDHWRQFVKDRCSEHFNL 631

[Close]

BLAST of Cla014620 vs. TrEMBL
Match: A5BU47_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003642 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-07
Identity = 31/58 (53.45%), Postives = 36/58 (62.07%), Query Frame = 1


Query: 1    MQTASICFRQFKYALTTKYIRPFKDDLEKLKCPSIEYSHIEQEHWDAFVSFRLKEEFQ 59
            M T   CFR FK  LT K+I PFKD+ E LK P  EY  I+ E W+ FV  RL E+FQ
Sbjct: 1105 MLTVGKCFRSFKNTLTVKHILPFKDEPELLKKPPAEYHFIDDEDWNIFVKNRLSEKFQ 1162

[Close]

BLAST of Cla014620 vs. TrEMBL
Match: A5AWV0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018163 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.6e-07
Identity = 32/58 (55.17%), Postives = 34/58 (58.62%), Query Frame = 1


Query: 1   MQTASICFRQFKYALTTKYIRPFKDDLEKLKCPSIEYSHIEQEHWDAFVSFRLKEEFQ 59
           M T   CFR FK  LT KY+ PFKD  E LK P IEY  IE E W  FV  RL + FQ
Sbjct: 891 MLTMGKCFRSFKNMLTVKYVIPFKDQPEVLKKPPIEYIFIEDEDWTIFVKERLSKRFQ 948

[Close]

BLAST of Cla014620 vs. NCBI nr
Match: gi|778691681|ref|XP_011653325.1| (PREDICTED: uncharacterized protein LOC105435199 isoform X1 [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 1.8e-09
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 1


Query: 1   MQTASICFRQFKYALTTKYIRPFKDDLEKLKCPSIEYSHIEQEHWDAFVSFRLKEEFQ 59
           +Q   ICF  FK  LTT Y+   KDD+E LK P  EYS I+++HWD FV+ RLKE+F+
Sbjct: 81  LQNVRICFSGFKLRLTTTYVLSLKDDVENLKRPPAEYSFIDEDHWDEFVASRLKEDFE 138

[Close]

BLAST of Cla014620 vs. NCBI nr
Match: gi|658051497|ref|XP_008361483.1| (PREDICTED: uncharacterized protein LOC103425182 [Malus domestica])

HSP 1 Score: 70.9 bits (172), Expect = 1.8e-09
Identity = 35/58 (60.34%), Postives = 41/58 (70.69%), Query Frame = 1


Query: 1   MQTASICFRQFKYALTTKYIRPFKDDLEKLKCPSIEYSHIEQEHWDAFVSFRLKEEFQ 59
           +  AS  +RQFK  LTTKYI PFKDD E LK P  EY  I+QEHW+ FV+ RL +EFQ
Sbjct: 78  LSAASNRWRQFKCDLTTKYIMPFKDDAEALKNPPKEYDFIKQEHWEQFVNGRLTKEFQ 135

[Close]

BLAST of Cla014620 vs. NCBI nr
Match: gi|703120396|ref|XP_010102092.1| (hypothetical protein L484_001825 [Morus notabilis])

HSP 1 Score: 65.5 bits (158), Expect = 7.5e-08
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 1


Query: 1   MQTASICFRQFKYALTTKYIRPFKDDLEKLKCPSIEYSHIEQEHWDAFVSFRLKEEF 58
           + +AS  ++ FK  LTTKYI PFKD  E LK P  +YS I+Q+HW  FV FRL EEF
Sbjct: 236 LSSASNSWKNFKNMLTTKYIVPFKDQPELLKHPPEDYSFIKQKHWGEFVRFRLSEEF 292

[Close]

BLAST of Cla014620 vs. NCBI nr
Match: gi|703120396|ref|XP_010102092.1| (hypothetical protein L484_001825 [Morus notabilis])

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 1


Query: 1   MQTASICFRQFKYALTTKYIRPFKDDLEKLKCPSIEYSHIEQEHWDAFVSFRLKEEF 58
           + +AS  ++ FK  LTTKYI PFKD  E LK P  +Y+ I+Q+HWD FV  RL EEF
Sbjct: 521 LSSASSSWKNFKSYLTTKYIVPFKDQPELLKNPPKDYNFIKQKHWDEFVRSRLSEEF 577

HSP 2 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 1


Query: 1   MQTASICFRQFKYALTTKYIRPFKDDLEKLKCPSIEYSHIEQEHWDAFVSFRLKEEFQ 59
           + +AS  +RQFK  LT KYI PFKD+ E LK P  +Y  I+Q+HW  FV+ RL +EFQ
Sbjct: 112 LTSASNRWRQFKSDLTRKYIMPFKDEAEALKNPPEDYGFIKQQHWQQFVNGRLTKEFQ 169

[Close]

BLAST of Cla014620 vs. NCBI nr
Match: gi|568842780|ref|XP_006475311.1| (PREDICTED: uncharacterized protein LOC102615410 [Citrus sinensis])

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 30/57 (52.63%), Postives = 36/57 (63.16%), Query Frame = 1


Query: 2   QTASICFRQFKYALTTKYIRPFKDDLEKLKCPSIEYSHIEQEHWDAFVSFRLKEEFQ 59
           Q     FR FKY LTTKYI P K + ++LK P  +YSHI Q  WD FV+ RL  EF+
Sbjct: 171 QALGSAFRNFKYLLTTKYILPHKHNRKRLKRPPFQYSHIPQNVWDKFVNSRLSTEFE 227

The following BLAST results are available for this feature:

BLAST of Cla014620 vs. TrEMBL


Match Name	E-value	Identity	Description
W9RSV2_9ROSA	5.2e-08	56.14	Uncharacterized protein OS=Morus notabilis GN=L484_001825 PE=4 SV=1	[more]
W9RSV2_9ROSA	1.5e-07	54.39	Uncharacterized protein OS=Morus notabilis GN=L484_001825 PE=4 SV=1	[more]
A5AEE4_VITVI	1.5e-07	57.41	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029185 PE=4 SV=1	[more]
A5BU47_VITVI	2.0e-07	53.45	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003642 PE=4 SV=1	[more]
A5AWV0_VITVI	2.6e-07	55.17	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018163 PE=4 SV=1	[more]

BLAST of Cla014620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778691681\|ref\|XP_011653325.1\|	1.8e-09	53.45	PREDICTED: uncharacterized protein LOC105435199 isoform X1 [Cucumis sativus]	[more]
gi\|658051497\|ref\|XP_008361483.1\|	1.8e-09	60.34	PREDICTED: uncharacterized protein LOC103425182 [Malus domestica]	[more]
gi\|703120396\|ref\|XP_010102092.1\|	7.5e-08	56.14	hypothetical protein L484_001825 [Morus notabilis]	[more]
gi\|703120396\|ref\|XP_010102092.1\|	2.2e-07	54.39	hypothetical protein L484_001825 [Morus notabilis]	[more]
gi\|568842780\|ref\|XP_006475311.1\|	2.2e-07	52.63	PREDICTED: uncharacterized protein LOC102615410 [Citrus sinensis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla014620	Cla014620.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla014620	Silver-seed gourd	carwmB0940
Cla014620	Cucumber (Chinese Long) v3	cucwmB322
Cla014620	Watermelon (97103) v2	wmwmbB166
Cla014620	Wax gourd	wgowmB177
Cla014620	Cucumber (Gy14) v1	cgywmB147
Cla014620	Cucurbita maxima (Rimu)	cmawmB307
Cla014620	Cucurbita maxima (Rimu)	cmawmB677
Cla014620	Cucurbita moschata (Rifu)	cmowmB301
Cla014620	Cucurbita moschata (Rifu)	cmowmB671
Cla014620	Melon (DHL92) v3.5.1	mewmB505
Cla014620	Watermelon (Charleston Gray)	wcgwmB364
Cla014620	Cucumber (Chinese Long) v2	cuwmB310
Cla014620	Cucurbita pepo (Zucchini)	cpewmB218
Cla014620	Cucurbita pepo (Zucchini)	cpewmB420
Cla014620	Bottle gourd (USVL1VR-Ls)	lsiwmB439
Cla014620	Cucumber (Gy14) v2	cgybwmB288
Cla014620	Melon (DHL92) v3.6.1	medwmB491