Cla014471 (gene) Watermelon (97103) v1

Overview
NameCla014471
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 30986549 .. 30988597 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTGGCGGACAATCCAAAGTCGGTAAGCATTTTTCTAAACTAATAATTTACGCTTTTCAACTGTTCCATTGGATTTTGTGTCATAATCAATTTAATTGTGCTTGTTTCCCATGGCTTTACATTTAATTTAATTTCCCGCACACCTCTCTAATGCTCTTTACTTTTAACCACTTGAAAATCGAATCGGGTTCTTGATTCTTTCGCTCAGGTAATTACTTCTGGCGAAGTGAATAATGGGTTAGAAGAAAAGGCAGTGATTTCCGATCAATCAAACAGACTTCAGTACAAAACAAAACCCGATAGCTTCATCATCGATATGGACAATTTTTCCAACAAGGAAATTTCTCACAATTCAAGACTTACAGTGAGTTTTTCTTTATTTTTATTTCCCGTTGGATACTCCTGGAAAGAAAAAAAGAAAAAAAGAAAAAGTTGAAATTTCGACTTATTAAAGACGTTATTGAAAAGAAATAGTGGGTTTAGGTTTACGTTTACGGTGGGATTAATTTTGTTTTTATGGAAATTGCAGAAGAATTTTAGCAGAAAAGGAATGTTACGTGGCGGAAACAAGATGGGGCAAGATCATGGTGACGGTGACGATGGGGCAGGAGAGTCCATCTCCCCAATAGGTAAAGTAACTTCAAATTAAAACACGTGCACTGCACTTGCGAGTTTCAACAACAGACCGAAAGGAAACATTAACATTTGGAGCGCTCTCTCTTTTTCTTTTTTTAACAAAATTTAATTTCTTATAAACCGACCACACCCAAAATGGGATTTGTCCCTTTTTTTTTTTTTTTTTTTTTCAATTATTTAATTAATTATTGCCCATGAAAAAATGTCTCGGTGTGGTAGGAGGAGGGTCGAGCGTGCTCGAAAAGCAGGTGGTGGGGGGCAGAGAAGAATTGGGCGGTGGGGCACTCAGCCACGAGATAGCGATTAGTAATGCCCACGGCGGCGGCGGTGGCGGCGAAAGGCTGAGCTTTAGAAGAAACAGCTTCAAGCGGTCTCCACAACCTTGCAGCTGGTACTTGGACCCCAGGAAGATTTTTTTGTTCTGCGCCACACTGTAAGCTTATTTATTTATTTATTATTATTTTTTTTACCCTAATAATTCAATGCGTTAATTAAATATTTCAATTGCAAGTTTAGTAAGTTTAAATTTGTGTCTATTTAATATTTAAATTTTTGAAATGGTTTAATAGATCCTTGAATTTTACATTTTACATTTAATAAGTATCTAAATTTTCATTTGGTTCAAACTCTTAATTTTTAACAAAAGTTAATTTATAGTTAATGTATTAGATATAAAGAACTTAAAATTTTCTATTTTATGATTAGTAAATACTTGAATTTTAAAAATTATGTTGAATAGGTCAATTTAAATACAAGATTGAAAAATGTAGAAATCTATTGTACACAAAACTAAAAGTTTAAATTGTTAAAGACACATTTGAAAGTTAGAGTGATTATAATAGACACAAATTTTAAATTTATAATTTAATCTAAAAAAAATATGAATCAATTCATCAAACACATATAGTCCTAGGTTTGCTTTTGTCATTTTCACCTATATTGATATTGATAGGTTTACATTGTATTTATTCGTAAGGTACAGATTTTTAAAACGGAAAAAAACCTCAAAGAAATTTTTGAACTTTAATCTTTTATGTCCCGTAGATTCAAAAAACATTTAATATGGCTTGAGGTCTATGTCATATTCAATTCTTCTTCTTCTTTTTTAAACTCCCAAACTCATTAAACATAAAAATGAAAAGGTTACAACAATAAATCTGTGAGGTTTAAAAAGTGTCGAATACAACAGTCAGCTATTAGACGGTAAACGAAAATTTCAAGTAACTAAGAAAAAGAATTAAAGCCTAATTATTAGCTTTAAGTTTAATGAATATTTTAAATGATAATGAATGGGTGCAGGTCGTGCGTGGGAACAATGTTGCTGATATACTTGGCATTTTCATCTGGGATTCTCAAAGTAGAAGAAAGCGAGTTGGGATTCATAGAGCTCAACAGTCCAAACCGTTAG

mRNA sequence

ATGGAATTGGCGGACAATCCAAAGTCGAAGAATTTTAGCAGAAAAGGAATGTTACGTGGCGGAAACAAGATGGGGCAAGATCATGGTGACGGTGACGATGGGGCAGGAGAGTCCATCTCCCCAATAGGAGGAGGGTCGAGCGTGCTCGAAAAGCAGGTGGTGGGGGGCAGAGAAGAATTGGGCGGTGGGGCACTCAGCCACGAGATAGCGATTAGTAATGCCCACGGCGGCGGCGGTGGCGGCGAAAGGCTGAGCTTTAGAAGAAACAGCTTCAAGCGGTCTCCACAACCTTGCAGCTGGTCGTGCGTGGGAACAATGTTGCTGATATACTTGGCATTTTCATCTGGGATTCTCAAAGTAGAAGAAAGCGAGTTGGGATTCATAGAGCTCAACAGTCCAAACCGTTAG

Coding sequence (CDS)

ATGGAATTGGCGGACAATCCAAAGTCGAAGAATTTTAGCAGAAAAGGAATGTTACGTGGCGGAAACAAGATGGGGCAAGATCATGGTGACGGTGACGATGGGGCAGGAGAGTCCATCTCCCCAATAGGAGGAGGGTCGAGCGTGCTCGAAAAGCAGGTGGTGGGGGGCAGAGAAGAATTGGGCGGTGGGGCACTCAGCCACGAGATAGCGATTAGTAATGCCCACGGCGGCGGCGGTGGCGGCGAAAGGCTGAGCTTTAGAAGAAACAGCTTCAAGCGGTCTCCACAACCTTGCAGCTGGTCGTGCGTGGGAACAATGTTGCTGATATACTTGGCATTTTCATCTGGGATTCTCAAAGTAGAAGAAAGCGAGTTGGGATTCATAGAGCTCAACAGTCCAAACCGTTAG

Protein sequence

MELADNPKSKNFSRKGMLRGGNKMGQDHGDGDDGAGESISPIGGGSSVLEKQVVGGREELGGGALSHEIAISNAHGGGGGGERLSFRRNSFKRSPQPCSWSCVGTMLLIYLAFSSGILKVEESELGFIELNSPNR
Homology
[Close]
BLAST of Cla014471 vs. TrEMBL
Match: A0A0A0KN31_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G515450 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-38
Identity = 94/141 (66.67%), Postives = 104/141 (73.76%), Query Frame = 1 

Query: 2   ELADNPK-SKNFSRKGMLRGGNKMGQDHGDGDDGAGESISPI-GGGSSVLEKQVVGGREE 61
           E++ N + S+NFSRKGMLRGGNK+GQD+GDGD+  GESISPI GGGSS LEKQ V GREE
Sbjct: 54  EISHNSRISRNFSRKGMLRGGNKIGQDNGDGDEAGGESISPIGGGGSSTLEKQAVVGREE 113

Query: 62  LGGGALSHEIAISNAHGGGGGGERLSFRRNSFKRSPQPCSW--------------SCVGT 121
           L  GALSHE AIS+      G E+LS RRNSFKRS QPCSW              SCVGT
Sbjct: 114 LVVGALSHETAISSTQ-RSSGAEKLSMRRNSFKRSTQPCSWYLDPRKIFLFCATLSCVGT 173

Query: 122 MLLIYLAFSSGILKVEESELG 127
           MLLIYL FSSG+LKVEESE G
Sbjct: 174 MLLIYLTFSSGLLKVEESESG 193

[Close]
BLAST of Cla014471 vs. NCBI nr
Match: gi|778720516|ref|XP_011658165.1| (PREDICTED: uncharacterized protein LOC105435952 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 1.6e-38
Identity = 94/141 (66.67%), Postives = 104/141 (73.76%), Query Frame = 1 

Query: 2   ELADNPK-SKNFSRKGMLRGGNKMGQDHGDGDDGAGESISPI-GGGSSVLEKQVVGGREE 61
           E++ N + S+NFSRKGMLRGGNK+GQD+GDGD+  GESISPI GGGSS LEKQ V GREE
Sbjct: 54  EISHNSRISRNFSRKGMLRGGNKIGQDNGDGDEAGGESISPIGGGGSSTLEKQAVVGREE 113

Query: 62  LGGGALSHEIAISNAHGGGGGGERLSFRRNSFKRSPQPCSW--------------SCVGT 121
           L  GALSHE AIS+      G E+LS RRNSFKRS QPCSW              SCVGT
Sbjct: 114 LVVGALSHETAISSTQ-RSSGAEKLSMRRNSFKRSTQPCSWYLDPRKIFLFCATLSCVGT 173

Query: 122 MLLIYLAFSSGILKVEESELG 127
           MLLIYL FSSG+LKVEESE G
Sbjct: 174 MLLIYLTFSSGLLKVEESESG 193

[Close]
BLAST of Cla014471 vs. NCBI nr
Match: gi|659078882|ref|XP_008439956.1| (PREDICTED: uncharacterized protein LOC103484588 isoform X1 [Cucumis melo])

HSP 1 Score: 161.0 bits (406), Expect = 1.5e-36
Identity = 96/152 (63.16%), Postives = 108/152 (71.05%), Query Frame = 1 

Query: 2   ELADNPK-SKNFSRKGMLRGGNKMGQDHGDGDDGAGESISPIGGG----SSVLEKQVVGG 61
           E++ N + S+NFSRKGMLRGG+K+GQD+GDGD+ AGESISP+GGG    SS LEKQ V G
Sbjct: 53  EISHNSRISRNFSRKGMLRGGSKIGQDNGDGDE-AGESISPLGGGGGGGSSTLEKQAVVG 112

Query: 62  REEL--------GGGALSHEIAISNAHGGGGGGERLSFRRNSFKRSPQPCSW-------- 121
           REEL        G GALSHE AIS+     G  E+LS RRNSFKRSPQPCSW        
Sbjct: 113 REELVVGGSGGVGVGALSHETAISSTQWSVGA-EKLSIRRNSFKRSPQPCSWYLDPRKIF 172

Query: 122 ------SCVGTMLLIYLAFSSGILKVEESELG 127
                 SCVGTMLLIYL FSSG+LKVEESELG
Sbjct: 173 LFCATLSCVGTMLLIYLTFSSGLLKVEESELG 202

[Close]
BLAST of Cla014471 vs. NCBI nr
Match: gi|659078884|ref|XP_008439957.1| (PREDICTED: uncharacterized protein LOC103484588 isoform X2 [Cucumis melo])

HSP 1 Score: 159.1 bits (401), Expect = 5.5e-36
Identity = 96/149 (64.43%), Postives = 105/149 (70.47%), Query Frame = 1 

Query: 5   DNPKSK-NFSRKGMLRGGNKMGQDHGDGDDGAGESISPIGGG----SSVLEKQVVGGREE 64
           DN  +K NFSRKGMLRGG+K+GQD+GDGD+ AGESISP+GGG    SS LEKQ V GREE
Sbjct: 47  DNLSNKRNFSRKGMLRGGSKIGQDNGDGDE-AGESISPLGGGGGGGSSTLEKQAVVGREE 106

Query: 65  L--------GGGALSHEIAISNAHGGGGGGERLSFRRNSFKRSPQPCSW----------- 124
           L        G GALSHE AIS+     G  E+LS RRNSFKRSPQPCSW           
Sbjct: 107 LVVGGSGGVGVGALSHETAISSTQWSVGA-EKLSIRRNSFKRSPQPCSWYLDPRKIFLFC 166

Query: 125 ---SCVGTMLLIYLAFSSGILKVEESELG 127
              SCVGTMLLIYL FSSG+LKVEESELG
Sbjct: 167 ATLSCVGTMLLIYLTFSSGLLKVEESELG 193

The following BLAST results are available for this feature:
BLAST of Cla014471 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KN31_CUCSA1.1e-3866.67Uncharacterized protein OS=Cucumis sativus GN=Csa_6G515450 PE=4 SV=1[more]
BLAST of Cla014471 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778720516|ref|XP_011658165.1|1.6e-3866.67PREDICTED: uncharacterized protein LOC105435952 [Cucumis sativus][more]
gi|659078882|ref|XP_008439956.1|1.5e-3663.16PREDICTED: uncharacterized protein LOC103484588 isoform X1 [Cucumis melo][more]
gi|659078884|ref|XP_008439957.1|5.5e-3664.43PREDICTED: uncharacterized protein LOC103484588 isoform X2 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005773 vacuole
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla014471Cla014471.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla014471Cla97C01G021860Watermelon (97103) v2wmwmbB234
Cla014471Csa6G515450Cucumber (Chinese Long) v2cuwmB500
Cla014471ClCG01G022190Watermelon (Charleston Gray)wcgwmB141
Cla014471CSPI06G33780Wild cucumber (PI 183967)cpiwmB519
Cla014471CmaCh07G002980Cucurbita maxima (Rimu)cmawmB826
Cla014471CmoCh07G002880Cucurbita moschata (Rifu)cmowmB816
Cla014471Lsi01G004030Bottle gourd (USVL1VR-Ls)lsiwmB144
Cla014471Cp4.1LG19g07540Cucurbita pepo (Zucchini)cpewmB482
Cla014471CsGy6G033320Cucumber (Gy14) v2cgybwmB468
Cla014471MELO3C032917.2Melon (DHL92) v3.6.1medwmB561
Cla014471Carg07829Silver-seed gourdcarwmB0642
Cla014471Carg13715Silver-seed gourdcarwmB0931
Cla014471CsaV3_6G049270Cucumber (Chinese Long) v3cucwmB526
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla014471Cucumber (Chinese Long) v3cucwmB050
Cla014471Cucumber (Chinese Long) v3cucwmB145
Cla014471Cucumber (Chinese Long) v3cucwmB623
Cla014471Watermelon (97103) v2wmwmbB260
Cla014471Wax gourdwgowmB432
Cla014471Watermelon (97103) v1wmwmB082
Cla014471Watermelon (97103) v1wmwmB144
Cla014471Cucumber (Gy14) v1cgywmB026
Cla014471Cucumber (Gy14) v1cgywmB071
Cla014471Cucumber (Gy14) v1cgywmB098
Cla014471Cucumber (Gy14) v1cgywmB259
Cla014471Cucurbita maxima (Rimu)cmawmB201
Cla014471Cucurbita maxima (Rimu)cmawmB578
Cla014471Cucurbita maxima (Rimu)cmawmB632
Cla014471Cucurbita moschata (Rifu)cmowmB188
Cla014471Cucurbita moschata (Rifu)cmowmB491
Cla014471Cucurbita moschata (Rifu)cmowmB573
Cla014471Cucurbita moschata (Rifu)cmowmB623
Cla014471Melon (DHL92) v3.5.1mewmB103
Cla014471Melon (DHL92) v3.5.1mewmB167
Cla014471Melon (DHL92) v3.5.1mewmB238
Cla014471Melon (DHL92) v3.5.1mewmB572
Cla014471Watermelon (Charleston Gray)wcgwmB194
Cla014471Watermelon (Charleston Gray)wcgwmB237
Cla014471Cucumber (Chinese Long) v2cuwmB043
Cla014471Cucumber (Chinese Long) v2cuwmB134
Cla014471Cucumber (Chinese Long) v2cuwmB593
Cla014471Cucurbita pepo (Zucchini)cpewmB043
Cla014471Cucurbita pepo (Zucchini)cpewmB073
Cla014471Cucurbita pepo (Zucchini)cpewmB513
Cla014471Bottle gourd (USVL1VR-Ls)lsiwmB099
Cla014471Cucumber (Gy14) v2cgybwmB044
Cla014471Melon (DHL92) v3.6.1medwmB164
Cla014471Melon (DHL92) v3.6.1medwmB230
Cla014471Silver-seed gourdcarwmB0029
Cla014471Silver-seed gourdcarwmB0879
Cla014471Silver-seed gourdcarwmB1007